Search for multifactorial disease susceptibility genes in founder populations.

Abstract:

:The current challenge in biomedical research is to detect genetic risk factors involved in common complex diseases. The power to detect their role is generally poor in populations that have been large for a long time. It has been suggested that the power may be increased by taking advantage of the specificity of founder populations: linkage disequilibrium spanning larger regions and kinship coefficients being stronger than in large populations. A new method is proposed here, the Maximum Identity Length Contrast (MILC) which, in contrast with other existing methods, does not make the assumption of unique ancestry for the genetic risk factors. It is thus appropriate for a search for common genetic risk factors for complex diseases. Statistical properties of the method are discussed in realistic contexts.

journal_name

Ann Hum Genet

journal_title

Annals of human genetics

authors

Bourgain C,Genin E,Quesneville H,Clerget-Darpoux F

doi

10.1046/j.1469-1809.2000.6430255.x

subject

Has Abstract

pub_date

2000-05-01 00:00:00

pages

255-65

issue

Pt 3

eissn

0003-4800

issn

1469-1809

journal_volume

64

pub_type

杂志文章
  • Report on the Fifth International Workshop on Chromosome 9 held at Eynsham, Oxfordshire, UK, September 4-6, 1996.

    abstract::The Fifth International workshop on chromosome 9 comprised a gathering of 36 scientists from seven countries and included a fairly even distribution of interests along chromosome 9 as well as a strong input from more global activities and from comparative mapping. At least eight groups had participated in the goal set...

    journal_title:Annals of human genetics

    pub_type:

    doi:10.1046/j.1469-1809.1997.6130183.x

    authors: Povey S,Attwood J,Chadwick B,Frezal J,Haines JL,Knowles M,Kwiatkowski DJ,Olopade OI,Slaugenhaupt S,Spurr NK,Smith M,Steel K,White JA,Pericak-Vance MA

    更新日期:1997-05-01 00:00:00

  • Genetic diversity of a late prehispanic group of the Quebrada de Humahuaca, northwestern Argentina.

    abstract::This palaeogenetic study focused on the analysis of a late prehispanic Argentinean group from the Humahuaca valley, with the main aim of reconstructing its (micro)evolutionary history. The Humahuaca valley, a natural passageway from the eastern plains to the highlands, was the living environment of Andean societies wh...

    journal_title:Annals of human genetics

    pub_type: 历史文章,杂志文章

    doi:10.1111/ahg.12075

    authors: Mendisco F,Keyser C,Seldes V,Rivolta C,Mercolli P,Cruz P,Nielsen AE,Crubezy E,Ludes B

    更新日期:2014-09-01 00:00:00

  • Genetic association studies in complex disease: disentangling additional predisposing loci from associated neutral loci using a constrained - permutation approach.

    abstract::In the process of genetically mapping a complex disease, the question may arise whether a certain polymorphism is the only causal variant in a region. A number of methods can answer this question, but unfortunately these methods are optimal for bi-allelic loci only. We wanted to develop a method that is more suited fo...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1529-8817.2004.00129.x

    authors: Spijker GT,Nolte IM,Jansen RC,Te Meerman GJ

    更新日期:2005-01-01 00:00:00

  • A genome-wide association study of autism reveals a common novel risk locus at 5p14.1.

    abstract::Although autism is one of the most heritable neuropsychiatric disorders, its underlying genetic architecture has largely eluded description. To comprehensively examine the hypothesis that common variation is important in autism, we performed a genome-wide association study (GWAS) using a discovery dataset of 438 autis...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2009.00523.x

    authors: Ma D,Salyakina D,Jaworski JM,Konidari I,Whitehead PL,Andersen AN,Hoffman JD,Slifer SH,Hedges DJ,Cukier HN,Griswold AJ,McCauley JL,Beecham GW,Wright HH,Abramson RK,Martin ER,Hussman JP,Gilbert JR,Cuccaro ML,Haines JL

    更新日期:2009-05-01 00:00:00

  • A speculative model for the Rh blood groups.

    abstract::Two closely linked structural loci, D and 'CcEe', are proposed as the basis of the Rh blood groups. Mutation and unequal crossing-over between the two loci at meiosis are considered as possible explanations for some rare Rh complexes. The theory predicts that complexes arising from unequal crossing-over would be expec...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1986.tb01045.x

    authors: Tippett P

    更新日期:1986-07-01 00:00:00

  • High resolution T association tests of complex diseases based on family data.

    abstract::This paper proposes family based Hotelling's T(2) tests for high resolution linkage disequilibrium (LD) mapping or association studies of complex diseases. Assume that genotype data of multiple markers or haplotype blocks are available for a sample of nuclear families, in which some offspring are affected. Paired Hote...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1529-8817.2004.00151.x

    authors: Fan R,Knapp M,Wjst M,Zhao C,Xiong M

    更新日期:2005-03-01 00:00:00

  • Family-based tests of association and/or linkage.

    abstract::The large literature on family-based tests of association and/or linkage is reviewed, concentrating on the underlying principles and on recent methodological developments. We explain the distinction between testing for association and testing for linkage, and give our views on the circumstances in which each is the ap...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,评审

    doi:10.1017/S0003480001008818

    authors: Whittaker JC,Morris AP

    更新日期:2001-09-01 00:00:00

  • Using case-parent triads to estimate relative risks associated with a candidate haplotype.

    abstract::Estimating haplotype relative risks in a family-based study is complicated by phase ambiguity and the many parameters needed to quantify relative risks for all possible diplotypes. This problem becomes manageable if a particular haplotype has been implicated previously as relevant to risk. We fit log-linear models to ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2009.00515.x

    authors: Shi M,Umbach DM,Weinberg CR

    更新日期:2009-05-01 00:00:00

  • Bayesian inference in multipoint gene mapping.

    abstract::The problem of ordering and mapping genes on the basis of recombinant data and radiation hybrid data is formulated as a problem of Bayesian inference for an unknown permutation. The challenging computational problems posed by this approach are shown to be resolvable using Markov chain Monte Carlo methods. ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1993.tb00887.x

    authors: Stephens DA,Smith AF

    更新日期:1993-01-01 00:00:00

  • Genetic linkage between the Kell blood group system and prolactin-inducible protein loci: provisional assignment of KEL to chromosome 7.

    abstract::The Kell blood group locus (KEL) is tightly linked to the prolactin-inducible protein locus (PIP) with zeta = 9.12 at theta = 0.00 for combined paternal and maternal meioses. In view of the regional localization of PIP to 7q32-q36 (Myal et al. 1989a), a similar assignment for KEL is favoured. ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1991.tb00406.x

    authors: Zelinski T,Coghlan G,Myal Y,Shiu RP,Philipps S,White L,Lewis M

    更新日期:1991-05-01 00:00:00

  • A note on assortative mating, linkage and genotypic frequencies.

    abstract::It is shown that in the equilibrium position with respect to the assortative mating process given by Fisher's (1918) model, the population is in linkage disequilibrium, contrary to a result given by Vetta (1975). ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1978.tb00937.x

    authors: Wilson SR

    更新日期:1978-07-01 00:00:00

  • Integrating sibship data for mapping quantitative trait loci.

    abstract::Sibship methods have been shown to be more powerful than traditional sib-pair methods in mapping quantative trait loci. We propose a statistical procedure which integrates data on sibships into a so-called 'contrast function', a natural extension of the classical squared sib-pair trait difference proposed by Haseman &...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1017/S0003480002001070

    authors: Ghosh S,Reich T

    更新日期:2002-03-01 00:00:00

  • Multivariate linkage analysis of specific language impairment (SLI).

    abstract::Specific language impairment (SLI) is defined as an inability to develop appropriate language skills without explanatory medical conditions, low intelligence or lack of opportunity. Previously, a genome scan of 98 families affected by SLI was completed by the SLI Consortium, resulting in the identification of two quan...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2007.00361.x

    authors: Monaco AP

    更新日期:2007-09-01 00:00:00

  • Testing association with interactions by partitioning chi-squares.

    abstract::Gene-gene interaction plays an important role in association studies for complex diseases. There have been different approaches to incorporating gene-gene interactions in candidate gene or genome-wide association studies, especially for those genes with no marginal effects but with interaction effects. However, there ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2008.00480.x

    authors: Yang Y,He C,Ott J

    更新日期:2009-01-01 00:00:00

  • Inbreeding coefficients for X-linked and autosomal genes in consanguineous marriages in Spanish populations: the case of Guipúzcoa (Basque Country).

    abstract::Inbreeding patterns over the past two centuries have been studied more extensively in Spain and Italy than anywhere else in Europe. Consanguinity studies in mainland Spain have shown that populations settled along the Cantabrian cornice share inbreeding patterns that distinguish them from other populations further sou...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2008.00495.x

    authors: Calderón R,Aresti U,Ambrosio B,González-Martín A

    更新日期:2009-03-01 00:00:00

  • Refined association mapping for a quantitative trait: weight in the H19-IGF2-INS-TH region.

    abstract::Previous analyses have provided evidence for one or more loci affecting body weight in the H19-IGF2-INS-TH region on chromosome 11p15. To identify the location of a possible causal locus or loci we applied association analysis by composite likelihood to a large cohort under the Malecot model for body weight. A random ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2006.00290.x

    authors: Zhang W,Maniatis N,Rodriguez S,Miller GJ,Day IN,Gaunt TR,Collins A,Morton NE

    更新日期:2006-11-01 00:00:00

  • Testing the genetic relation between two individuals using a panel of frequency-unknown single nucleotide polymorphisms.

    abstract::The author proposes a method to test the genetic relation between two individuals using a panel of SNPs. The method does not require information about the allele frequencies, and as such it can be used to test any pair of individuals from any population(s). ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1529-8817.2003.00063.x

    authors: Lee WC

    更新日期:2003-11-01 00:00:00

  • Mutation detection in Croatian patients with familial hypercholesterolemia.

    abstract::Familial hypercholesterolemia (FH) is caused by mutations in the genes for LDLR, APOB or PCSK9, and identification of the causative mutation provides definitive diagnosis so that the patient can be treated, their relatives tested and, therefore, premature heart disease prevented. DNA of eight unrelated individuals wit...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2012.00735.x

    authors: Pećin I,Whittall R,Futema M,Sertić J,Reiner Z,Leigh SE,Humphries SE

    更新日期:2013-01-01 00:00:00

  • Population differences in DNA sequence variation and linkage disequilibrium at the PON1 gene.

    abstract::Polymorphisms of the promoter region (-108C/T) and the coding region (192Q/R) of the paraoxonase 1 gene (PON1) showed differences in association with cardiovascular disease risk in various populations. To characterize the genetic variation underlying these important polymorphisms, we examined DNA sequence variation bo...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1529-8817.2003.00077.x

    authors: Koda Y,Tachida H,Soejima M,Takenaka O,Kimura H

    更新日期:2004-03-01 00:00:00

  • Identification and regional localization of a highly polymorphic dinucleotide repeat D11S614 to the interval in 11q23.3 flanked by recurrent translocation breakpoints.

    abstract::A highly informative dinucleotide repeat polymorphism has been identified at the D11S614 locus on chromosome 11q23. Ten different alleles have been observed at this locus, and the heterozygosity frequency is approximately 85%. Physical localization of this marker in a panel of somatic cell hybrids containing chromosom...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1993.tb00901.x

    authors: Benham F,Sugiyama R,Hunt D,Gillett G,Smith M

    更新日期:1993-10-01 00:00:00

  • Assignment of the gene for cytosolic alanine aminotransferase (AAT1) to human chromosome 8.

    abstract::The segregation of human cytosolic alanine aminotransferase (AAT1) and the individual human chromosomes has been studied in 27 secondary and tertiary rat hepatoma-human (liver) fibroblast hybrids. The staining solution used to visualize AAT activity on starch gels was specific for AAT since it was visualized only when...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1982.tb00703.x

    authors: Astrin KH,Arredondo-Vega FX,Desnick RJ,Smith M

    更新日期:1982-05-01 00:00:00

  • Similarity-based multimarker association tests for continuous traits.

    abstract::Testing multiple markers simultaneously not only can capture the linkage disequilibrium patterns but also can decrease the number of tests and thus alleviate the multiple-testing penalty. If a gene is associated with a phenotype, subjects with similar genotypes in this gene should also have similar phenotypes. Based o...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2012.00706.x

    authors: Lin WY,Tiwari HK,Gao G,Zhang K,Arcaroli JJ,Abraham E,Liu N

    更新日期:2012-05-01 00:00:00

  • The distribution of Q: a powerful sibship test of association.

    abstract::Non-random inheritance of the two parental haplotypes among siblings affected by certain diseases has long been used to provide evidence of the presence of disease susceptibility genes. The distribution of a powerful test, called Q, based on haplotype concordance and discordance, is derived under the null hypothesis o...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1994.tb01885.x

    authors: Shah S,Green JR

    更新日期:1994-05-01 00:00:00

  • Phylogenetic analysis of mtDNA lineages in South American mummies.

    abstract::Some studies of mtDNA propose that contemporary Amerindians have descended from four haplotype groups, each defined by specific sets of polymorphisms. One recent study also found evidence of other potential founder haplotypes. We wanted to determine whether the four haplotypes in modern populations were also present i...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1996.tb01193.x

    authors: Monsalve MV,Cardenas F,Guhl F,Delaney AD,Devine DV

    更新日期:1996-07-01 00:00:00

  • The European-specific mitochondrial cluster J/T could confer an increased risk of insulin-resistance and type 2 diabetes: an analysis of the m.4216T > C and m.4917A > G variants.

    abstract::The aims of this study were to investigate the contributions of the mitochondrial DNA m.4216T > C and m.4917A > G variants, and also of the European-specific mitochondrial cluster J/T, to the development of type 2 diabetes mellitus in Caucasian-Brazilian patients from Southern Brazil. We analyzed 347 type 2 diabetes p...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1111/j.1469-1809.2005.00249.x

    authors: Crispim D,Canani LH,Gross JL,Tschiedel B,Souto KE,Roisenberg I

    更新日期:2006-07-01 00:00:00

  • Predominance of extreme geographical proximity of the spouses of heirs to independent farms in a mountain valley in Norway between 1600 and 1850.

    abstract::The marriages contracted between 1600 and 1850 in the parishes Vang and Slidre in the mountain valley of Valdres in Norway were investigated, using the information in the genealogical and local history of the parishes and in various public archives. The parishes functioned as a marriage isolate, in spite of regular co...

    journal_title:Annals of human genetics

    pub_type: 历史文章,杂志文章

    doi:

    authors: Saugstad LF,Odegård O

    更新日期:1977-05-01 00:00:00

  • Physical mapping: integrating computational and molecular genetic data.

    abstract::A crucial step beyond the identification of genetic linkage of a disease to a chromosomal region is the production of a physical map that will allow the identification of candidate genes. Although the process of physical map building has been facilitated by the flow of data released by the Human Genome Project, gather...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,评审

    doi:10.1017/S0003480001008594

    authors: Le Hellard S,Semple CA,Morris SW,Porteous DJ,Evans KL

    更新日期:2001-05-01 00:00:00

  • A genome-based study of consanguinity in three co-resident endogamous Pakistan communities.

    abstract::In a study based on 173 individuals drawn from three endogamous, co-resident communities in the province of Punjab, the Awan, Khattar and Rajpoot, an analysis of 10 autosomal single tandem repeats on chromosomes 13 and 15 revealed distinctive genetic profiles in each community. A total of 99 different alleles were det...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1017/S0003480000007946

    authors: Wang W,Sullivan SG,Ahmed S,Chandler D,Zhivotovsky LA,Bittles AH

    更新日期:2000-01-01 00:00:00

  • Portability of tag SNPs across isolated population groups: an example from India.

    abstract::Isolated population groups are useful in conducting association studies of complex diseases to avoid various pitfalls, including those arising from population stratification. Since DNA resequencing is expensive, it is recommended that genotyping be carried out at tagSNP (tSNP) loci. For this, tSNPs identified in one i...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2006.00383.x

    authors: Sarkar Roy N,Farheen S,Roy N,Sengupta S,Majumder PP

    更新日期:2008-01-01 00:00:00

  • Four SNPS on chromosome 9p21 confer risk to premature, familial CAD and MI in an American Caucasian population (GeneQuest).

    abstract::Genome-wide association studies have separately identified four single nucleotide polymorphisms (SNPs) on chromosome 9p21 that confer susceptibility to coronary artery disease (CAD) and myocardial infarction (MI). This study presents the first analysis of these SNPs (rs10757274, rs2383206, rs2383207, and rs10757278) i...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2008.00454.x

    authors: Abdullah KG,Li L,Shen GQ,Hu Y,Yang Y,MacKinlay KG,Topol EJ,Wang QK

    更新日期:2008-09-01 00:00:00