Integrated sRNAome and RNA-Seq analysis reveals miRNA effects on betalain biosynthesis in pitaya.

abstract：BACKGROUND:Clubroot, caused by Plasmodiophora brassicae Woronin, is a very important disease of Brassica species. Management of clubroot relies heavily on genetic resistance. In a cross of Brassica nigra lines PI 219576 (highly resistant, R) × CR2748 (highly susceptible, S) to clubroot, all F1 plants were resistant to ...

journal_title：BMC plant biology

authors： Chang A,Lamara M,Wei Y,Hu H,Parkin IAP,Gossen BD,Peng G,Yu F

更新日期：2019-05-29 00:00:00

abstract：BACKGROUND:Superficial scald is a physiological disorder of apple fruit characterized by sunken, necrotic lesions appearing after prolonged cold storage, although initial injury occurs much earlier in the storage period. To determine the degree to which the transition to cell death is an active process and specific met...

journal_title：BMC plant biology

authors： Gapper NE,Hertog MLATM,Lee J,Buchanan DA,Leisso RS,Fei Z,Qu G,Giovannoni JJ,Johnston JW,Schaffer RJ,Nicolaï BM,Mattheis JP,Watkins CB,Rudell DR

更新日期：2017-04-21 00:00:00

abstract：BACKGROUND:Hydroxyproline rich glycoproteins (HRGPs) are implicated to have a role in many aspects of plant growth and development but there is limited knowledge about their localization and function during somatic embryogenesis of higher plants. In this study, the localization and function of hydroxyproline rich glyco...

journal_title：BMC plant biology

authors： Xu C,Takáč T,Burbach C,Menzel D,Samaj J

更新日期：2011-02-24 00:00:00

abstract：BACKGROUND:Restriction-site associated DNA sequencing (RADseq) technology was recently employed to identify a large number of single nucleotide polymorphisms (SNP) for linkage mapping of a North American and Eastern Asian Populus species. However, there is also the need for high-density genetic linkage maps for the Eur...

journal_title：BMC plant biology

authors： Zhigunov AV,Ulianich PS,Lebedeva MV,Chang PL,Nuzhdin SV,Potokina EK

更新日期：2017-11-14 00:00:00

abstract：BACKGROUND:Rhododendron molle (Ericaceae) is a traditional Chinese medicinal plant, its flower and root have been widely used to treat rheumatism and relieve pain for thousands of years in China. Chemical studies have revealed that R. molle contains abundant secondary metabolites such as terpenoinds, flavonoids and lig...

journal_title：BMC plant biology

authors： Zhou GL,Zhu P

更新日期：2020-09-04 00:00:00

abstract：BACKGROUND:Lycoris species have great ornamental and medicinal values; however, their low regeneration efficiency seriously restricts their commercial production. Understanding the mechanism of bulblet propagation in this genus, which has remained underexplored to date, could provide a theoretical basis for improving t...

journal_title：BMC plant biology

authors： Xu J,Li Q,Yang L,Li X,Wang Z,Zhang Y

更新日期：2020-04-25 00:00:00

abstract：BACKGROUND:Soil salinity is an important factor affecting growth, development, and productivity of almost all land plants, including the forage crop alfalfa (Medicago sativa). However, little is known about how alfalfa responds and adapts to salt stress, particularly among different salt-tolerant cultivars. RESULTS:Am...

journal_title：BMC plant biology

authors： Lei Y,Xu Y,Hettenhausen C,Lu C,Shen G,Zhang C,Li J,Song J,Lin H,Wu J

更新日期：2018-02-15 00:00:00

abstract：BACKGROUND:Over the last two years, considerable advances have been made in common bean (Phaseolus vulgaris L.) genomics, especially with the completion of the genome sequence and the availability of RNAseq data. However, as common bean is recalcitrant to stable genetic transformation, much work remains to be done for ...

journal_title：BMC plant biology

authors： Pflieger S,Blanchet S,Meziadi C,Richard MM,Thareau V,Mary F,Mazoyer C,Geffroy V

更新日期：2014-08-29 00:00:00

abstract：BACKGROUND:Calophyllum brasiliense is highlighted as an important resource of calanolides, which are dipyranocoumarins that inhibit the reverse transcriptase of human immunodeficiency virus type 1 (HIV-1 RT). Despite having great medicinal importance, enzymes involved in calanolide, biosynthesis and the pathway itself,...

journal_title：BMC plant biology

authors： Gómez-Robledo HB,Cruz-Sosa F,Bernabé-Antonio A,Guerrero-Analco A,Olivares-Romero JL,Alonso-Sánchez A,Villafán E,Ibarra-Laclette E

更新日期：2016-08-15 00:00:00

abstract：BACKGROUND:miRNAs are known to play important regulatory roles throughout plant development. Until recently, nearly all the miRNAs in maize were identified by comparative analysis to miRNAs sequences of other plant species, such as rice and Arabidopsis. RESULTS:To find new miRNA in this important crop, small RNAs from...

journal_title：BMC plant biology

authors： Jiao Y,Song W,Zhang M,Lai J

更新日期：2011-10-20 00:00:00

abstract：BACKGROUND:Somatic embryogenesis (SE) is an asexual propagation pathway requiring a somatic-to-embryonic transition of differentiated somatic cells toward embryogenic cells capable of producing embryos in a process resembling zygotic embryogenesis. In chicory, genetic variability with respect to the formation of somati...

journal_title：BMC plant biology

authors： Legrand S,Hendriks T,Hilbert JL,Quillet MC

更新日期：2007-06-06 00:00:00

abstract：BACKGROUND:Sec18p/N-ethylmaleimide-sensitive factor (NSF) is a conserved eukaryotic ATPase, which primarily functions in vesicle membrane fusion from yeast to human. However, the function of the OsSec18 gene, a homologue of NSF in rice, remains unknown. RESULTS:In the present study, we investigated the function of OsS...

journal_title：BMC plant biology

authors： Sun Y,Ning T,Liu Z,Pang J,Jiang D,Guo Z,Song G,Yang D

更新日期：2015-02-17 00:00:00

abstract：BACKGROUND:Apple is a widely cultivated fruit crop for its quality properties and extended storability. Among the several quality factors, texture is the most important and appreciated, and within the apple variety panorama the cortex texture shows a broad range of variability. Anatomically these variations depend on d...

journal_title：BMC plant biology

authors： Longhi S,Hamblin MT,Trainotti L,Peace CP,Velasco R,Costa F

更新日期：2013-03-04 00:00:00

abstract：BACKGROUND:Shoot architecture is fundamentally crucial to crop growth and productivity. As a key component of shoot architecture, plant height is known to be controlled by both genetic and environmental factors, though specific details remain scarce. RESULTS:In this study, 308 representative soybean lines from a core ...

journal_title：BMC plant biology

authors： Yang Q,Lin G,Lv H,Wang C,Yang Y,Liao H

更新日期：2021-01-25 00:00:00

abstract：BACKGROUND:Fruit maturation and ripening are genetically regulated processes that involve a complex interplay of plant hormones, growth regulators and multiple biological and environmental factors. Tomato (Solanum lycopersicum) has been used as a model of biological and genetic studies on the regulation of specific rip...

journal_title：BMC plant biology

authors： Ma N,Feng H,Meng X,Li D,Yang D,Wu C,Meng Q

更新日期：2014-12-10 00:00:00

abstract：BACKGROUND:Drought is a major abiotic stress factors that reduces agricultural productivity. GRAS transcription factors are plant-specific proteins that play diverse roles in plant development. However, the functions of a number of GRAS genes identified in rice are unknown, especially the GRAS genes related to rice dro...

journal_title：BMC plant biology

authors： Xu K,Chen S,Li T,Ma X,Liang X,Ding X,Liu H,Luo L

更新日期：2015-06-13 00:00:00

abstract：BACKGROUND:The recent development of novel repeat-fruiting types of blackberry (Rubus L.) cultivars, combined with a long history of morphological marker-assisted selection for thornlessness by blackberry breeders, has given rise to increased interest in using molecular markers to facilitate blackberry breeding. Yet no...

journal_title：BMC plant biology

authors： Lewers KS,Saski CA,Cuthbertson BJ,Henry DC,Staton ME,Main DS,Dhanaraj AL,Rowland LJ,Tomkins JP

更新日期：2008-06-20 00:00:00

abstract：BACKGROUND:microRNAs (miRNAs) are implicated in plant development processes and play pivotal roles in plant adaptation to environmental stresses. Salicornia europaea, a salt mash euhalophyte, is a suitable model plant to study salt adaptation mechanisms. S. europaea is also a vegetable, forage, and oilseed that can be ...

journal_title：BMC plant biology

authors： Feng J,Wang J,Fan P,Jia W,Nie L,Jiang P,Chen X,Lv S,Wan L,Chang S,Li S,Li Y

更新日期：2015-02-26 00:00:00

abstract：BACKGROUND:MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression at the post-transcriptional level in eukaryotes. In rice, MIR7695 expression is regulated by infection with the rice blast fungus Magnaporthe oryzae with subsequent down-regulation of an alternatively spliced transcript of natural res...

journal_title：BMC plant biology

authors： Sánchez-Sanuy F,Peris-Peris C,Tomiyama S,Okada K,Hsing YI,San Segundo B,Campo S

更新日期：2019-12-18 00:00:00

abstract：BACKGROUND:Mechanized dry seeded rice can save both labour and water resources. Rice seedling establishment is sensitive to sowing depth while mesocotyl elongation facilitates the emergence of deeply sown seeds. RESULTS:A set of 270 rice accessions, including 170 from the mini-core collection of Chinese rice germplasm...

journal_title：BMC plant biology

authors： Wu J,Feng F,Lian X,Teng X,Wei H,Yu H,Xie W,Yan M,Fan P,Li Y,Ma X,Liu H,Yu S,Wang G,Zhou F,Luo L,Mei H

更新日期：2015-09-11 00:00:00

abstract：BACKGROUND:Plant lipid transfer proteins (LTPs) assemble a family of small (7-9 kDa) ubiquitous cationic proteins with an ability to bind and transport lipids as well as participate in various physiological processes including defense against phytopathogens. They also form one of the most clinically relevant classes of...

journal_title：BMC plant biology

authors： Bogdanov IV,Shenkarev ZO,Finkina EI,Melnikova DN,Rumynskiy EI,Arseniev AS,Ovchinnikova TV

更新日期：2016-04-30 00:00:00

abstract：BACKGROUND:Dwarf bunt, which is caused by Tilletia controversa Kühn, is a soilborne and seedborne disease that occurs worldwide and can lead to 70% or even total losses of wheat crops. However, very little information is available about the histological changes that occur in dwarf bunt-resistant and dwarf bunt-suscepti...

journal_title：BMC plant biology

authors： Xu T,Qin D,Muhae Ud Din G,Liu T,Chen W,Gao L

更新日期：2021-01-18 00:00:00

abstract：BACKGROUND:Castor seeds are a major source for ricinoleate, an important industrial raw material. Genomics studies of castor plant will provide critical information for understanding seed metabolism, for effectively engineering ricinoleate production in transgenic oilseeds, or for genetically improving castor plants by...

journal_title：BMC plant biology

authors： Lu C,Wallis JG,Browse J

更新日期：2007-07-31 00:00:00

abstract：BACKGROUND:Paphiopedilum is a horticulturally and ecologically important genus of ca. 80 species of lady's slipper orchids native to Southeast Asia. These plants have long been of interest regarding their chromosomal evolution, which involves a progressive aneuploid series based on either fission or fusion of centromer...

journal_title：BMC plant biology

authors： Lan T,Albert VA

更新日期：2011-09-12 00:00:00

abstract：BACKGROUND:Characterization of the expression and function of genes regulating embryo development in conifers is interesting from an evolutionary point of view. However, our knowledge about the regulation of embryo development in conifers is limited. During early embryo development in Pinus species the proembyo goes th...

journal_title：BMC plant biology

authors： Merino I,Abrahamsson M,Sterck L,Craven-Bartle B,Canovas F,von Arnold S

更新日期：2016-11-18 00:00:00

abstract：BACKGROUND:Stearoyl-acyl carrier protein desaturase (SAD) is a key enzyme that catalyses the conversion of stearoyl-acyl carrier protein (ACP) to oleoyl-ACP, a precursor for the biosynthesis of polyunsaturated fatty acids. ZmSAD1 (GenBank: KU949326) is a major QTL for stearic acid content in maize seeds. To investigate...

journal_title：BMC plant biology

authors： Du H,Huang M,Hu J,Li J

更新日期：2016-06-14 00:00:00

abstract：BACKGROUND:StWhy1, a member of the plant-specific Whirly single-stranded DNA-binding protein family, was first characterized as a transcription factor involved in the activation of the nuclear PR-10a gene following defense-related stress in potato. In Arabidopsis thaliana, Whirlies have recently been shown to be primar...

journal_title：BMC plant biology

authors： Maréchal A,Parent JS,Sabar M,Véronneau-Lafortune F,Abou-Rached C,Brisson N

更新日期：2008-04-18 00:00:00

abstract：BACKGROUND:UDP-glucose pyrophosphorylase (UGPase) is a sugar-metabolizing enzyme (E.C. 2.7.7.9) that catalyzes a reversible reaction of UDP-glucose and pyrophosphate from glucose-1-phosphate and UTP. UDP-glucose is a key intermediate sugar that is channeled to multiple metabolic pathways. The functional role of UGPase ...

journal_title：BMC plant biology

authors： Payyavula RS,Tschaplinski TJ,Jawdy SS,Sykes RW,Tuskan GA,Kalluri UC

更新日期：2014-10-07 00:00:00

abstract：BACKGROUND:While there is now a significant body of research correlating apple (Malus x domestica) fruit softening with the cell wall hydrolase ENDO-POLYGALACTURONASE1 (PG1), there is currently little knowledge of its physiological effects in planta. This study examined the effect of down regulation of PG1 expression i...

journal_title：BMC plant biology

authors： Atkinson RG,Sutherland PW,Johnston SL,Gunaseelan K,Hallett IC,Mitra D,Brummell DA,Schröder R,Johnston JW,Schaffer RJ

更新日期：2012-08-02 00:00:00

abstract：BACKGROUND:Sucrose synthase (SUS) is widely considered a key enzyme participating in sucrose metabolism in higher plants and regarded as a biochemical marker for sink strength in crops. However, despite significant progress in characterizing the physiological functions of the SUS gene family, knowledge of the trajector...

journal_title：BMC plant biology

authors： Xu X,Yang Y,Liu C,Sun Y,Zhang T,Hou M,Huang S,Yuan H

更新日期：2019-12-18 00:00:00