Abstract:
:TDP2 encodes a 5'-tyrosyl DNA phosphodiesterase required for the efficient repair of double-strand breaks (DSBs) induced by the abortive activity of DNA topoisomerase II (TOP2). To date, only three homozygous variants in TDP2 have been reported in six patients from four unrelated pedigrees with spinocerebellar ataxia 23 (SCAR23). By whole-exome sequencing, we identified a novel TDP2 splice-site variant (c.636 + 3_636 + 6del) in two Italian siblings (aged 40 and 45) showing progressive ataxia, intellectual disability, speech delay, refractory seizures, and various physical anomalies. The variant caused exon 5 skipping with consequent nonsense-mediated mRNA decay and defective repair of TOP2-induced DSBs, as demonstrated by the functional assays on the patients' fibroblasts. Our findings further demonstrate the pathogenic role of TDP2 biallelic loss-of-function variants in SCAR23 pathogenesis. Considering the age of our patients, the oldest reported to date, and their extensive follow-up, our study delineates in more detail the clinical phenotype related to the loss of TDP2 activity.
journal_name
J Hum Genetjournal_title
Journal of human geneticsauthors
Errichiello E,Zagnoli-Vieira G,Rizzi R,Garavelli L,Caldecott KW,Zuffardi Odoi
10.1038/s10038-020-0800-4subject
Has Abstractpub_date
2020-12-01 00:00:00pages
1135-1141issue
12eissn
1434-5161issn
1435-232Xpii
10.1038/s10038-020-0800-4journal_volume
65pub_type
杂志文章abstract::Intracellular concentrations of the nucleotide inosine triphosphate (ITP) are regulated by ITP-ase (EC 3.6.1.19), which is encoded by ITPA on chromosome 20p. Subjects with complete deficiency of ITP-ase activity (MIM 147520) have elevated ITP concentrations in erythrocytes, but no obvious clinical abnormalities. Based...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380200095
更新日期:2002-01-01 00:00:00
abstract::DNA variants in a 31-kb region of the human major histocompatibility complex, encompassing the tumor necrosis factor (TNF) gene cluster, were surveyed by direct sequencing of 283 unrelated individuals from six Chinese populations. A total of 273 polymorphic sites were identified, with nearly half of them novel. We obs...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2010.33
更新日期:2010-06-01 00:00:00
abstract::Since adducin modulates cellular sodium retention, its follows that ADD1, which encodes the alpha-subunit of adducin, is an attractive candidate gene for blood pressure variation. Association studies examining the relationship between polymorphism at ADD1 codon 460 (G460W) and both hypertension and blood pressure, whi...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380050148
更新日期:1999-01-01 00:00:00
abstract::Induction rates of the dicentrics and translocations involving chromosomes 2 and 4 in peripheral lymphocytes irradiated with X-rays at a dose of 3 Gy were examined using a conventional Giemsa staining method and a chromosome painting method. In total, 228 reciprocal exchanges detected in 982 metaphases were classified...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-003-0071-x
更新日期:2003-01-01 00:00:00
abstract::Pyle disease (PYL) is an extremely rare disorder of irregular development of long bone. Recently, homozygous mutations in secreted frizzled-related protein 4 gene (SFRP4) gene were found to underlie this condition. Sequencing of coding regions of SFRP4 gene from an 11-year-old female with PYL was performed. A novel ho...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2016.166
更新日期:2017-04-01 00:00:00
abstract::Takayasu arteritis (TAK) is an immune-mediated vasculitis affecting large arteries first reported in 1908 from Japan. Case reports of familial onset of TAK from Japan and other countries indicated genetic contribution to TAK onset beyond ethnicity. Genetic studies of TAK have been performed mainly addressing the human...
journal_title:Journal of human genetics
pub_type: 杂志文章,评审
doi:10.1038/jhg.2015.87
更新日期:2016-01-01 00:00:00
abstract::Genomic diversity based on 13 short tandem repeat (STR) loci (D3S1358, vWA, FGA, D8S1179, D21S11, D18S51, D5S818, D13S317, D7S820, D16S539, TH01, TPOX, and CSF1PO) is reported for the first time in Basques from the provinces of Guipúzcoa and Navarre (Spain). STR data from previous studies on Basques from Alava and Viz...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-005-0268-2
更新日期:2005-01-01 00:00:00
abstract::Several genetic loci (JAZF1, CDC123/CAMK1D, TSPAN8/LGR5, ADAMTS9, VEGFA and HHEX-IDE) were identified to be significantly related to the risk of type 2 diabetes and quantitative metabolic traits in European populations. Here, we aimed to evaluate the impacts of these novel loci on type 2 diabetes risk in a population-...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2010.117
更新日期:2010-12-01 00:00:00
abstract::Heterozygous pathogenic variants in SLC12A2 are reported in patients with nonsyndromic hearing loss. Recently, homozygous loss-of-function variants have been reported in two patients with syndromic intellectual disability, with or without hearing loss. However, the clinical and molecular spectrum of SLC12A2 disease ha...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/s10038-021-00904-2
更新日期:2021-01-27 00:00:00
abstract::Recently, haplotype-based association studies have become popular for detecting disease-related or drug-response-associated genes. In these studies, it has been gradually recognized that a haplotype block structure is important. A rational and automatic method for identifying the haplotype block structure from SNP dat...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-007-0176-8
更新日期:2007-01-01 00:00:00
abstract::An isoleucine/valine polymorphism was observed at codon 1464 of the ATP7A gene, which is thought to encode a copper transporting adenosine triphosphatase (ATPase). The frequency of Val1464 was estimated to be 5.7% in the Japanese population. This polymorphism may be useful in genetic studies of Menkes disease. ...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380050194
更新日期:1999-01-01 00:00:00
abstract::Tuberous sclerosis (TS) is a rare autosomal-dominant genetic disease. TS is manifested by the development of multiple hamartomas, which affect brain, kidneys, retina, skin and other organs. This study aimed to reveal specific features of molecular epidemiology of TS in Russia. Blood DNA samples from 61 patients with d...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/s10038-018-0416-0
更新日期:2018-05-01 00:00:00
abstract::Idiopathic pulmonary fibrosis (IPF) is a chronic, progressive lung disease that is refractory to treatment and carries a high mortality rate. IPF is frequently associated with lung cancer. Identification of molecular targets involved in both diseases may elucidate novel molecular mechanisms contributing to their patho...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2016.99
更新日期:2016-12-01 00:00:00
abstract::To elucidate possible physiological functions of human endogenous retroviruses (HERVs) and their role in the pathogenesis of human diseases, we have developed a strategy to identify transcriptionally active HERV genes. By this approach, we have identified and isolated an active HERV-E gene that was mapped to 17q11. Al...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380170012
更新日期:2001-01-01 00:00:00
abstract::Genetic factors, alone or in interaction with components of the diet, are thought to be involved in the development of the metabolic syndrome. The objective of our study was first to compare the frequency of the peroxisome proliferator-activated receptor (PPAR)alpha-L162V polymorphism in a sample of men with and witho...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-004-0177-9
更新日期:2004-01-01 00:00:00
abstract::Ectopic periarticular calcifications associated with elevated levels of serum phosphate represent the principal clinical features of hyperphosphatemic familial tumoral calcinosis (HFTC), a rare autosomal recessive metabolic disorder. The disease can be caused by recessive mutations in at least two different genes: Gal...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-007-0126-5
更新日期:2007-01-01 00:00:00
abstract::A wide range of phenotypes have been reported in autosomal recessive (AR) Charcot-Marie-Tooth disease (CMT) patients carrying mutations in the ganglioside-induced differentiation-associated protein 1 (GDAP1) gene, such as axonal, demyelinating, and intermediate forms of AR CMT. There have been very few reports of GDAP...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-008-0249-3
更新日期:2008-01-01 00:00:00
abstract::The roles of the erythropoietin (Epo) 3' enhancer in the activation of gene expression in response to hypoxia were investigated. The enhancer contains hypoxia-inducible enhancer binding site 1 (HIF-1 element) and two direct repeats of hexanucleotide consensus nuclear receptor half site (HNF-4 element). HIF-1, which is...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380050163
更新日期:1999-01-01 00:00:00
abstract::Glutathione synthetase deficiency is a rare autosomal recessive disorder resulting in low levels of glutathione and an increased susceptibility to oxidative stress. Patients with glutathione synthetase deficiency typically present in the neonatal period with hemolytic anemia, metabolic acidosis and neurological impair...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2016.20
更新日期:2016-07-01 00:00:00
abstract::We analyzed mitochondrial DNA (mtDNA) from 7 patients in four families with adult onset limb-girdle type mitochondrial myopathy to clarify their genetic background. The patients, 2 men and 5 women, showed common clinical features, characterized by isolated skeletal myopathy, high serum creatine kinase level, ragged-re...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380050145
更新日期:1999-01-01 00:00:00
abstract::Intracranial aneurysm (IA) is characterized by an abnormal bulging of one of the arteries in the brain and is heavily affected by genetic factors. Although IA is a very serious disease because of its severity and prevalence in the general public, the gene causing IA has not yet been identified due mainly to the lack o...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2011.27
更新日期:2011-06-01 00:00:00
abstract::Using genome-editing technologies to correct specific mutations represents a potentially transformative new approach for treating genetic disorders. Despite rapid advances in the field of genome editing, it is still unclear whether the long-standing goal of in vivo targeted transgene integration is feasible. This is p...
journal_title:Journal of human genetics
pub_type: 杂志文章,评审
doi:10.1038/s10038-017-0352-4
更新日期:2018-02-01 00:00:00
abstract::Although the Japanese population has a rather low genetic diversity, we recently confirmed the presence of two main clusters (the Hondo and Ryukyu clusters) through principal component analysis of genome-wide single-nucleotide polymorphism (SNP) genotypes. Understanding the genetic differences between the two main clu...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2012.26
更新日期:2012-05-01 00:00:00
abstract::Results of twin studies have shown that autism spectrum disorders (ASDs) are attributable to complex multigenic interactions rather than to a single susceptibility gene. However, the growing number of distinct, individually rare genetic causes of ASDs, mostly copy number variations (CNVs), favors an alternative to the...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2009.105
更新日期:2009-12-01 00:00:00
abstract::Fabry disease is a genetic disorder caused by a deficiency of α-galactosidase A (GLA). In our previous studies, we structurally investigated Fabry disease using a structural analysis system, and revealed that structural changes in GLA are very important for understanding the molecular basis of this disease. To the bes...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2011.31
更新日期:2011-06-01 00:00:00
abstract::The name Fon-Jou Hsieh was inadvertently omitted from the list of authors. The name should be added as the third author of the article. ...
journal_title:Journal of human genetics
pub_type: 杂志文章,已发布勘误
doi:10.1007/s10038-006-0367-8
更新日期:2006-03-01 00:00:00
abstract::Chromosome 5, especially the 5q31-33 region, may contain one or more loci to control total serum IgE as well as asthma and bronchial hyperresponsiveness. To investigate the regions related with IgE level in chromosome 5, we performed a case-control association study on 105 high-IgE-level and 85 normal-IgE-level asthma...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-004-0215-7
更新日期:2005-01-01 00:00:00
abstract::Type 1 diabetes mellitus (T1DM) is a disease characterised by the autoimmune destruction of insulin-producing pancreatic beta cells. Vitamin D is a known immune system modulator and its effects are exerted via the vitamin D receptor (VDR). Several VDR gene single nucleotide polymorphisms (SNPs) have been commonly stud...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s10038-007-0234-2
更新日期:2008-01-01 00:00:00
abstract::Bivariate survival models with discretely distributed frailty based on the major gene concept and applied to the data on related individuals such as twins and sibs can be used to estimate the underlying hazard, the relative risk and the frequency of the longevity allele. To determine the position of the longevity gene...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1038/jhg.2013.80
更新日期:2013-10-01 00:00:00
abstract::Interleukin (IL11) is a member of the interleukin 6 (IL6)-related cytokine subfamily, which stimulates T cell-dependent development of immunoglobulin-producing B cells. IL11 is also an important paracrine regulator of bone metabolism that induces formation of osteoclasts. In the work reported here, we sequenced the en...
journal_title:Journal of human genetics
pub_type: 杂志文章
doi:10.1007/s100380170052
更新日期:2001-01-01 00:00:00