Using Reduced Amino Acid Alphabet and Biological Properties to Analyze and Predict Animal Neurotoxin Protein.

Abstract:

AIMS:Because of the high affinity of these animal neurotoxin proteins for some special target site, they were usually used as pharmacological tools and therapeutic agents in medicine to gain deep insights into the function of the nervous system. BACKGROUND AND OBJECTIVE:The animal neurotoxin proteins are one of the most common functional groups among the animal toxin proteins. Thus, it was very important to characterize and predict the animal neurotoxin proteins. METHODS:In this study, the differences between the animal neurotoxin proteins and non-toxin proteins were analyzed. RESULT:Significant differences were found between them. In addition, the support vector machine was proposed to predict the animal neurotoxin proteins. The predictive results of our classifier achieved the overall accuracy of 96.46%. Furthermore, the random forest and k-nearest neighbors were applied to predict the animal neurotoxin proteins. CONCLUSION:The compared results indicated that the predictive performances of our classifier were better than other two algorithms.

journal_name

Curr Drug Metab

journal_title

Current drug metabolism

authors

Yu Y,Wang S,Wang Y,Cao Y,Yu C,Pan Y,Su D,Lu Q,Zuo Y,Yang L

doi

10.2174/1389200221666200520090555

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

810-817

issue

10

eissn

1389-2002

issn

1875-5453

pii

CDM-EPUB-106791

journal_volume

21

pub_type

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