Seawater recirculation through subducting sediments sustains a deeply buried population of sulfate-reducing bacteria.

Abstract:

:Subseafloor sulfate concentrations typically decrease with depth as this electron acceptor is consumed by respiring microorganisms. However, studies show that seawater can flow through hydraulically conductive basalt to deliver sulfate upwards into deeply buried overlying sediments. Our previous work on IODP Site C0012A (Nankai Trough, Japan) revealed that recirculation of sulfate through the subducting Philippine Sea Plate stimulated microbial activity near the sediment-basement interface (SBI). Here, we describe the microbial ecology, phylogeny, and energetic requirements of population of aero-tolerant sulfate-reducing bacteria in the deep subseafloor. We identified dissimilatory sulfite reductase gene (dsr) sequences 93% related to oxygen-tolerant Desulfovibrionales species across all reaction zones while no SRB were detected in drilling fluid control samples. Pore fluid chemistry revealed low concentrations of methane (<0.25 mM), while hydrogen levels were consistent with active bacterial sulfate reduction (0.51-1.52 nM). Solid phase total organic carbon (TOC) was also considerably low in these subseafloor sediments. Our results reveal the phylogenetic diversity, potential function, and physiological tolerance of a community of sulfate-reducing bacteria living at ~480 m below subducting seafloor.

journal_name

Geobiology

journal_title

Geobiology

authors

Cox TL,Gan HM,Moreau JW

doi

10.1111/gbi.12324

subject

Has Abstract

pub_date

2019-03-01 00:00:00

pages

172-184

issue

2

eissn

1472-4677

issn

1472-4669

journal_volume

17

pub_type

杂志文章
  • Effects of seawater Mg2+ /Ca2+ ratio and diet on the biomineralization and growth of sea urchins and the relevance of fossil echinoderms to paleoenvironmental reconstructions.

    abstract::It has been argued that skeletal Mg/Ca ratio in echinoderms is mostly governed by Mg2+ and Ca2+ concentrations in the ambient seawater. Accordingly, well-preserved fossil echinoderms were used to reconstruct Phanerozoic seawater Mg2+ /Ca2+ ratio. However, Mg/Ca ratio in echinoderm skeleton can be affected by a number ...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12409

    authors: Kołbuk D,Di Giglio S,M'Zoudi S,Dubois P,Stolarski J,Gorzelak P

    更新日期:2020-11-01 00:00:00

  • Millennial-scale ocean acidification and late Quaternary decline of cryptic bacterial crusts in tropical reefs.

    abstract::Ocean acidification by atmospheric carbon dioxide has increased almost continuously since the last glacial maximum (LGM), 21,000 years ago. It is expected to impair tropical reef development, but effects on reefs at the present day and in the recent past have proved difficult to evaluate. We present evidence that acid...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12097

    authors: Riding R,Liang L,Braga JC

    更新日期:2014-09-01 00:00:00

  • The co-evolution of phytoplankton and trace element cycles in the oceans.

    abstract::The composition of the oceans and of its biota have influenced each other through Earth's history. Of all the biologically essential elements, nitrogen is the only one whose seawater concentration is clearly controlled biologically; this is presumably the main reason why the stoichiometry of nitrogen (defined as its m...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1472-4669.2008.00144.x

    authors: Morel FM

    更新日期:2008-06-01 00:00:00

  • Experimental fossilization of mat-forming cyanobacteria in coarse-grained siliciclastic sediments.

    abstract::Microbial fossils and textures are commonly preserved in Ediacaran and early Cambrian coarse-grained siliciclastic sediments that were deposited in tidal and intertidal marine settings. In contrast, the fossilization of micro-organisms in similar marine environments of post-Cambrian age is less frequently reported. Th...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12229

    authors: Newman SA,Klepac-Ceraj V,Mariotti G,Pruss SB,Watson N,Bosak T

    更新日期:2017-07-01 00:00:00

  • Insights into chemotaxonomic composition and carbon cycling of phototrophic communities in an artesian sulfur-rich spring (Zodletone, Oklahoma, USA), a possible analog for ancient microbial mat systems.

    abstract::Zodletone spring in Oklahoma is a unique environment with high concentrations of dissolved-sulfide (10 mm) and short-chain gaseous alkanes, exhibiting characteristics that are reminiscent of conditions that are thought to have existed in Earth's history, in particular the late Archean and early-to-mid Proterozoic. Her...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00268.x

    authors: Bühring SI,Sievert SM,Jonkers HM,Ertefai T,Elshahed MS,Krumholz LR,Hinrichs KU

    更新日期:2011-03-01 00:00:00

  • Hydrocarbons preserved in a ~2.7 Ga outcrop sample from the Fortescue Group, Pilbara Craton, Western Australia.

    abstract::The hydrocarbons preserved in an Archean rock were extracted, and their composition and distribution in consecutive slices from the outside to the inside of the rock were examined. The 2.7 Ga rock was collected from the Fortescue Group in the Pilbara region, Western Australia. The bitumen I (solvent-extracted rock) an...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12117

    authors: Hoshino Y,Flannery DT,Walter MR,George SC

    更新日期:2015-03-01 00:00:00

  • Biogeochemical and physical controls on methane fluxes from two ferruginous meromictic lakes.

    abstract::Meromictic lakes with anoxic bottom waters often have active methane cycles whereby methane is generally produced biogenically under anoxic conditions and oxidized in oxic surface waters prior to reaching the atmosphere. Lakes that contain dissolved ferrous iron in their deep waters (i.e., ferruginous) are rare, but v...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12365

    authors: Lambrecht N,Katsev S,Wittkop C,Hall SJ,Sheik CS,Picard A,Fakhraee M,Swanner ED

    更新日期:2020-01-01 00:00:00

  • Energetics of Acidianus ambivalens growth in response to oxygen availability.

    abstract::All life requires energy to drive metabolic reactions such as growth and cell maintenance; therefore, fluctuations in energy availability can alter microbial activity. There is a gap in our knowledge concerning how energy availability affects the growth of extreme chemolithoautotrophs. Toward this end, we investigated...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12413

    authors: Hart C,Gorman-Lewis D

    更新日期:2021-01-01 00:00:00

  • The nature and origin of nucleus-like intracellular inclusions in Paleoproterozoic eukaryote microfossils.

    abstract::The well-known debate on the nature and origin of intracellular inclusions (ICIs) in silicified microfossils from the early Neoproterozoic Bitter Springs Formation has recently been revived by reports of possible fossilized nuclei in phosphatized animal embryo-like fossils from the Ediacaran Doushantuo Formation of So...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12053

    authors: Pang K,Tang Q,Schiffbauer JD,Yao J,Yuan X,Wan B,Chen L,Ou Z,Xiao S

    更新日期:2013-11-01 00:00:00

  • Morphological and isotopic changes of heterocystous cyanobacteria in response to N2 partial pressure.

    abstract::Earth's atmospheric composition has changed significantly over geologic time. Many redox active atmospheric constituents have left evidence of their presence, while inert constituents such as dinitrogen gas (N2 ) are more elusive. In this study, we examine two potential biological indicators of atmospheric N2 : the mo...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12312

    authors: Silverman SN,Kopf SH,Bebout BM,Gordon R,Som SM

    更新日期:2019-01-01 00:00:00

  • On the co-evolution of surface oxygen levels and animals.

    abstract::Few topics in geobiology have been as extensively debated as the role of Earth's oxygenation in controlling when and why animals emerged and diversified. All currently described animals require oxygen for at least a portion of their life cycle. Therefore, the transition to an oxygenated planet was a prerequisite for t...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/gbi.12382

    authors: Cole DB,Mills DB,Erwin DH,Sperling EA,Porter SM,Reinhard CT,Planavsky NJ

    更新日期:2020-05-01 00:00:00

  • Carotenoid biomarkers as an imperfect reflection of the anoxygenic phototrophic community in meromictic Fayetteville Green Lake.

    abstract::Organic biomarkers in marine sedimentary rocks hold important clues about the early history of Earth's surface environment. The chemical relicts of carotenoids from anoxygenic sulfur bacteria are of particular interest to geoscientists because of their potential to signal episodes of marine photic-zone euxinia such as...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2011.00285.x

    authors: Meyer KM,Macalady JL,Fulton JM,Kump LR,Schaperdoth I,Freeman KH

    更新日期:2011-07-01 00:00:00

  • The microbe-mineral environment and gypsum neogenesis in a weathered polar evaporite.

    abstract::Evaporitic deposits are a globally widespread habitat for micro-organisms. The microbe-mineral environment in weathered and remobilized gypsum from exposed mid-Ordovician marine evaporite beds in the polar desert of Devon Island, Nunavut, Canadian High Arctic was examined. The gypsum is characterized by internal green...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00240.x

    authors: Cockell CS,Osinski GR,Banerjee NR,Howard KT,Gilmour I,Watson JS

    更新日期:2010-09-01 00:00:00

  • Oxygen isotope analysis of bacterial and fungal manganese oxidation.

    abstract::The ability of micro-organisms to oxidize manganese (Mn) from Mn(II) to Mn(III/IV) oxides transcends boundaries of biological clade or domain. Many bacteria and fungi oxidize Mn(II) to Mn(III/IV) oxides directly through enzymatic activity or indirectly through the production of reactive oxygen species. Here, we determ...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12288

    authors: Sutherland KM,Wankel SD,Hansel CM

    更新日期:2018-07-01 00:00:00

  • The geobiological nitrogen cycle: From microbes to the mantle.

    abstract::Nitrogen forms an integral part of the main building blocks of life, including DNA, RNA, and proteins. N2 is the dominant gas in Earth's atmosphere, and nitrogen is stored in all of Earth's geological reservoirs, including the crust, the mantle, and the core. As such, nitrogen geochemistry is fundamental to the evolut...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/gbi.12228

    authors: Zerkle AL,Mikhail S

    更新日期:2017-05-01 00:00:00

  • Free and kerogen-bound biomarkers from late Tonian sedimentary rocks record abundant eukaryotes in mid-Neoproterozoic marine communities.

    abstract::Lipid biomarker assemblages preserved within the bitumen and kerogen phases of sedimentary rocks from the ca. 780-729 Ma Chuar and Visingsö Groups facilitate paleoenvironmental reconstructions and reveal fundamental aspects of emerging mid-Neoproterozoic marine communities. The Chuar and Visingsö Groups were deposited...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12378

    authors: Zumberge JA,Rocher D,Love GD

    更新日期:2020-05-01 00:00:00

  • Microbial metabolite fluxes in a model marine anoxic ecosystem.

    abstract::Permanently anoxic regions in the ocean are widespread and exhibit unique microbial metabolic activity exerting substantial influence on global elemental cycles and climate. Reconstructing microbial metabolic activity rates in these regions has been challenging, due to the technical difficulty of direct rate measureme...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12357

    authors: Louca S,Astor YM,Doebeli M,Taylor GT,Scranton MI

    更新日期:2019-11-01 00:00:00

  • DNA perseverance of microorganisms exposed to silica: an experimental study.

    abstract::The persistence of DNA from microorganisms exposed to various concentrations of SiO2 (ranging from 0 to 3000 p.p.m.) was monitored over time. The impact of silica mineralization or silicification on the longevity of 16S rRNA and 16 s rDNA genes from whole cells of Bacillus subtilis and Escherichia coli K12 was quantif...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2008.00177.x

    authors: Schelble RT,Hall JA,Nealson KH,Steele A

    更新日期:2008-12-01 00:00:00

  • Microbial colonization of metal sulfide minerals at a diffuse-flow deep-sea hydrothermal vent at 9°50'N on the East Pacific Rise.

    abstract::Metal sulfide minerals, including mercury sulfides (HgS), are widespread in hydrothermal vent systems where sulfur-oxidizing microbes are prevalent. Questions remain as to the impact of mineral composition and structure on sulfur-oxidizing microbial populations at deep-sea hydrothermal vents, including the possible ro...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12396

    authors: Wang CH,Gulmann LK,Zhang T,Farfan GA,Hansel CM,Sievert SM

    更新日期:2020-09-01 00:00:00

  • Desert breath-How fog promotes a novel type of soil biocenosis, forming the coastal Atacama Desert's living skin.

    abstract::The Atacama Desert is the driest non-polar desert on Earth, presenting precarious conditions for biological activity. In the arid coastal belt, life is restricted to areas with fog events that cause almost daily wet-dry cycles. In such an area, we discovered a hitherto unknown and unique ground covering biocenosis dom...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12368

    authors: Jung P,Baumann K,Lehnert LW,Samolov E,Achilles S,Schermer M,Wraase LM,Eckhardt KU,Bader MY,Leinweber P,Karsten U,Bendix J,Büdel B

    更新日期:2020-01-01 00:00:00

  • An experimental and theoretical approach to determining linkages between geochemical variability and microbial biodiversity in seafloor hydrothermal chimneys.

    abstract::New experimental results of fluid-mineral reactions at hydrothermal conditions relevant to life demonstrate that key redox reactions involving iron, sulfur, and hydrogen remain at disequilibrium at 100 °C, even in a heterogeneous system and thus are energetically favorable for microbial metabolism. Predictions from ge...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00255.x

    authors: Houghton JL,Seyfried WE Jr

    更新日期:2010-12-01 00:00:00

  • The environmental disaster of Aznalcóllar (southern Spain) as an approach to the Cretaceous-Palaeogene mass extinction event.

    abstract::Biotic recovery after the Cretaceous-Palaeogene (K-Pg) impact is one unsolved question concerning this mass extinction event. To evaluate the incidence of the K-Pg event on biota, and the subsequent recovery, a recent environmental disaster has been analysed. Areas affected by the contamination disaster of Aználcollar...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2009.00213.x

    authors: Rodríguez-Tovar FJ,Martín-Peinado FJ

    更新日期:2009-12-01 00:00:00

  • Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles.

    abstract::The emplacement of subaqueous gravity-driven sediment flows imposes a significant physical and geochemical impact on underlying sediment and microbial communities. Although previous studies have established lasting mineralogical and biological signatures of turbidite deposition, the response of bacteria and archaea wi...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12271

    authors: Harrison BK,Myrbo A,Flood BE,Bailey JV

    更新日期:2018-03-01 00:00:00

  • Microbially mediated aluminosilicate formation in acidic anaerobic environments: A cell-scale chemical perspective.

    abstract::Through the use of scanning transmission electron microscopy (STEM) combined with other complementary techniques (SEM, cryo-TEM, HRTEM, and EELS), we have studied the interaction of microorganisms inhabiting deep anoxic waters of acidic pit lakes with dissolved aluminum, silica, sulfate, and ferrous iron. These elemen...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12269

    authors: Sánchez-España J,Wang K,Falagán C,Yusta I,Burgos WD

    更新日期:2018-01-01 00:00:00

  • Early evolution of large micro-organisms with cytological complexity revealed by microanalyses of 3.4 Ga organic-walled microfossils.

    abstract::The Strelley Pool Formation (SPF) is widely distributed in the East Pilbara Terrane (EPT) of the Pilbara Craton, Western Australia, and represents a Paleoarchean shallow-water to subaerial environment. It was deposited ~3.4 billion years ago and displays well-documented carbonate stromatolites. Diverse putative microf...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12148

    authors: Sugitani K,Mimura K,Takeuchi M,Lepot K,Ito S,Javaux EJ

    更新日期:2015-11-01 00:00:00

  • Seeing the forest with the leaves - clues to canopy placement from leaf fossil size and venation characteristics.

    abstract::Although a variety of leaf characteristics appear to be induced by light environment during development, analysis of ontogenetic changes in living broad leaved trees has suggested that a number of other traits also lumped into the classic 'sun' versus 'shade' morphological distinctions, including leaf size, shape, and...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2008.00176.x

    authors: Boyce CK

    更新日期:2009-03-01 00:00:00

  • Extreme 15N-enrichments in 2.72-Gyr-old sediments: evidence for a turning point in the nitrogen cycle.

    abstract::Although nitrogen is a key element in organic molecules such as nucleic acids and proteins, the timing of the emergence of its modern biogeochemical cycle is poorly known. Recent studies on the antiquity of the nitrogen cycle and its interaction with free oxygen suggests the establishment of a complete aerobic N bioge...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2011.00271.x

    authors: Thomazo C,Ader M,Philippot P

    更新日期:2011-03-01 00:00:00

  • Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?

    abstract::Previous studies of the subsurface biosphere have deduced average cellular doubling times of hundreds to thousands of years based upon geochemical models. We have directly constrained the in situ average cellular protein turnover or doubling times for metabolically active micro-organisms based on cellular amino acid a...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12069

    authors: Onstott TC,Magnabosco C,Aubrey AD,Burton AS,Dworkin JP,Elsila JE,Grunsfeld S,Cao BH,Hein JE,Glavin DP,Kieft TL,Silver BJ,Phelps TJ,van Heerden E,Opperman DJ,Bada JL

    更新日期:2014-01-01 00:00:00

  • Fluidized muds: a novel setting for the generation of biosphere diversity through geologic time.

    abstract::Reworked and fluidized fine-grained deposits in energetic settings are a major modern-day feature of river deltas and estuaries. Similar environments were probably settings for microbial evolution on the early Earth. These sedimentary systems act as efficient biogeochemical reactors with high bacterial phylogenetic di...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1472-4669.2010.00234.x

    authors: Aller JY,Aller RC,Kemp PF,Chistoserdov AY,Madrid VM

    更新日期:2010-06-01 00:00:00

  • Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia.

    abstract::Biogeochemical changes in marine sediments during coastal water hypoxia are well described, but less is known about underlying changes in microbial communities. Bacterial and archaeal communities in Louisiana continental shelf (LCS) hypoxic zone sediments were characterized by pyrosequencing 16S rRNA V4-region gene fr...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12142

    authors: Devereux R,Mosher JJ,Vishnivetskaya TA,Brown SD,Beddick DL Jr,Yates DF,Palumbo AV

    更新日期:2015-09-01 00:00:00