Fluidized muds: a novel setting for the generation of biosphere diversity through geologic time.

Abstract:

:Reworked and fluidized fine-grained deposits in energetic settings are a major modern-day feature of river deltas and estuaries. Similar environments were probably settings for microbial evolution on the early Earth. These sedimentary systems act as efficient biogeochemical reactors with high bacterial phylogenetic diversity and functional redundancy. They are temporally rather than spatially structured, with repeated cycling of redox conditions and successive stages of microbial metabolic processes. Intense reworking of the fluidized bed entrains bacteria from varied habitats providing new, diverse genetic materials to contribute to horizontal gene transfer events and the creation of new bacterial ecotypes. These vast mud environments may act as exporters and promoters of biosphere diversity and novel adaptations, potentially on a globally important scale.

journal_name

Geobiology

journal_title

Geobiology

authors

Aller JY,Aller RC,Kemp PF,Chistoserdov AY,Madrid VM

doi

10.1111/j.1472-4669.2010.00234.x

subject

Has Abstract

pub_date

2010-06-01 00:00:00

pages

169-78

issue

3

eissn

1472-4677

issn

1472-4669

pii

GBI234

journal_volume

8

pub_type

杂志文章,评审
  • A diagenetic control on the Early Triassic Smithian-Spathian carbon isotopic excursions recorded in the marine settings of the Thaynes Group (Utah, USA).

    abstract::In the aftermath of the end-Permian mass extinction, Early Triassic sediments record some of the largest Phanerozoic carbon isotopic excursions. Among them, a global Smithian-negative carbonate carbon isotope excursion has been identified, followed by an abrupt increase across the Smithian-Spathian boundary (SSB; ~250...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12174

    authors: Thomazo C,Vennin E,Brayard A,Bour I,Mathieu O,Elmeknassi S,Olivier N,Escarguel G,Bylund KG,Jenks J,Stephen DA,Fara E

    更新日期:2016-05-01 00:00:00

  • On the co-evolution of surface oxygen levels and animals.

    abstract::Few topics in geobiology have been as extensively debated as the role of Earth's oxygenation in controlling when and why animals emerged and diversified. All currently described animals require oxygen for at least a portion of their life cycle. Therefore, the transition to an oxygenated planet was a prerequisite for t...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/gbi.12382

    authors: Cole DB,Mills DB,Erwin DH,Sperling EA,Porter SM,Reinhard CT,Planavsky NJ

    更新日期:2020-05-01 00:00:00

  • Effects of seawater Mg2+ /Ca2+ ratio and diet on the biomineralization and growth of sea urchins and the relevance of fossil echinoderms to paleoenvironmental reconstructions.

    abstract::It has been argued that skeletal Mg/Ca ratio in echinoderms is mostly governed by Mg2+ and Ca2+ concentrations in the ambient seawater. Accordingly, well-preserved fossil echinoderms were used to reconstruct Phanerozoic seawater Mg2+ /Ca2+ ratio. However, Mg/Ca ratio in echinoderm skeleton can be affected by a number ...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12409

    authors: Kołbuk D,Di Giglio S,M'Zoudi S,Dubois P,Stolarski J,Gorzelak P

    更新日期:2020-11-01 00:00:00

  • The geobiological nitrogen cycle: From microbes to the mantle.

    abstract::Nitrogen forms an integral part of the main building blocks of life, including DNA, RNA, and proteins. N2 is the dominant gas in Earth's atmosphere, and nitrogen is stored in all of Earth's geological reservoirs, including the crust, the mantle, and the core. As such, nitrogen geochemistry is fundamental to the evolut...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/gbi.12228

    authors: Zerkle AL,Mikhail S

    更新日期:2017-05-01 00:00:00

  • The nature and origin of nucleus-like intracellular inclusions in Paleoproterozoic eukaryote microfossils.

    abstract::The well-known debate on the nature and origin of intracellular inclusions (ICIs) in silicified microfossils from the early Neoproterozoic Bitter Springs Formation has recently been revived by reports of possible fossilized nuclei in phosphatized animal embryo-like fossils from the Ediacaran Doushantuo Formation of So...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12053

    authors: Pang K,Tang Q,Schiffbauer JD,Yao J,Yuan X,Wan B,Chen L,Ou Z,Xiao S

    更新日期:2013-11-01 00:00:00

  • Microbialite taphonomy and biogenicity: new insights from NanoSIMS.

    abstract::We here show that nano-scale mapping of elements commonly utilized in biological cycles provides a promising new additional line of evidence when evaluating the extent of the contribution of biology to microbialites. Our case study comes from Lake Clifton in Western Australia, a unique environment where living domical...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00251.x

    authors: Wacey D,Gleeson D,Kilburn MR

    更新日期:2010-12-01 00:00:00

  • An experimental and theoretical approach to determining linkages between geochemical variability and microbial biodiversity in seafloor hydrothermal chimneys.

    abstract::New experimental results of fluid-mineral reactions at hydrothermal conditions relevant to life demonstrate that key redox reactions involving iron, sulfur, and hydrogen remain at disequilibrium at 100 °C, even in a heterogeneous system and thus are energetically favorable for microbial metabolism. Predictions from ge...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00255.x

    authors: Houghton JL,Seyfried WE Jr

    更新日期:2010-12-01 00:00:00

  • Coupling hydrocarbon degradation to anaerobic respiration and mineral diagenesis: theoretical constraints.

    abstract::The diagenetic mineral assemblages in petroleum reservoirs control the formation fluid pH and pCO(2). Anaerobic biodegradation of petroleum is controlled by the transfer of electrons from reduced organic species to inorganic, redox sensitive, aqueous and mineral species in many cases through intermediates such as H(2)...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2009.00224.x

    authors: Onstott TC,Hinton SM,Silver BJ,King HE Jr

    更新日期:2010-01-01 00:00:00

  • Bioturbation and directionality in Earth's carbon isotope record across the Neoproterozoic-Cambrian transition.

    abstract::Mixing of sediments by moving animals becomes apparent in the trace fossil record from about 550 million years ago (Ma), loosely overlapping with the tail end of the extreme carbonate carbon isotope δ13 Ccarbonate fluctuations that qualitatively distinguish the Proterozoic geochemical record from that of the Phanerozo...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12277

    authors: Boyle RA,Dahl TW,Bjerrum CJ,Canfield DE

    更新日期:2018-05-01 00:00:00

  • The environmental disaster of Aznalcóllar (southern Spain) as an approach to the Cretaceous-Palaeogene mass extinction event.

    abstract::Biotic recovery after the Cretaceous-Palaeogene (K-Pg) impact is one unsolved question concerning this mass extinction event. To evaluate the incidence of the K-Pg event on biota, and the subsequent recovery, a recent environmental disaster has been analysed. Areas affected by the contamination disaster of Aználcollar...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2009.00213.x

    authors: Rodríguez-Tovar FJ,Martín-Peinado FJ

    更新日期:2009-12-01 00:00:00

  • Seawater recirculation through subducting sediments sustains a deeply buried population of sulfate-reducing bacteria.

    abstract::Subseafloor sulfate concentrations typically decrease with depth as this electron acceptor is consumed by respiring microorganisms. However, studies show that seawater can flow through hydraulically conductive basalt to deliver sulfate upwards into deeply buried overlying sediments. Our previous work on IODP Site C001...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12324

    authors: Cox TL,Gan HM,Moreau JW

    更新日期:2019-03-01 00:00:00

  • Role of extracellular reactive sulfur metabolites on microbial Se(0) dissolution.

    abstract::The dissolution of elemental selenium [Se(0)] during chemical weathering is an important step in the global selenium cycle. While microorganisms have been shown to play a key role in selenium dissolution in soils, the mechanisms of microbial selenium solubilization are poorly understood. In this study, we isolated a B...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12328

    authors: Goff J,Terry L,Mal J,Schilling K,Pallud C,Yee N

    更新日期:2019-05-01 00:00:00

  • Microbially mediated aluminosilicate formation in acidic anaerobic environments: A cell-scale chemical perspective.

    abstract::Through the use of scanning transmission electron microscopy (STEM) combined with other complementary techniques (SEM, cryo-TEM, HRTEM, and EELS), we have studied the interaction of microorganisms inhabiting deep anoxic waters of acidic pit lakes with dissolved aluminum, silica, sulfate, and ferrous iron. These elemen...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12269

    authors: Sánchez-España J,Wang K,Falagán C,Yusta I,Burgos WD

    更新日期:2018-01-01 00:00:00

  • The late-stage "ferruginization" of the Ediacara Member (Rawnsley Quartzite, South Australia): Insights from uranium isotopes.

    abstract::The paleoenvironmental setting in which the Ediacara Biota lived, died, and was preserved in the eponymous Ediacara Member of the Rawnsley Quartzite of South Australia is an issue of long-standing interest and recent debate. Over the past few decades, interpretations have ranged from deep marine to shallow marine to t...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12262

    authors: Tarhan LG,Planavsky NJ,Wang X,Bellefroid EJ,Droser ML,Gehling JG

    更新日期:2018-01-01 00:00:00

  • Early evolution of large micro-organisms with cytological complexity revealed by microanalyses of 3.4 Ga organic-walled microfossils.

    abstract::The Strelley Pool Formation (SPF) is widely distributed in the East Pilbara Terrane (EPT) of the Pilbara Craton, Western Australia, and represents a Paleoarchean shallow-water to subaerial environment. It was deposited ~3.4 billion years ago and displays well-documented carbonate stromatolites. Diverse putative microf...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12148

    authors: Sugitani K,Mimura K,Takeuchi M,Lepot K,Ito S,Javaux EJ

    更新日期:2015-11-01 00:00:00

  • Extreme 15N-enrichments in 2.72-Gyr-old sediments: evidence for a turning point in the nitrogen cycle.

    abstract::Although nitrogen is a key element in organic molecules such as nucleic acids and proteins, the timing of the emergence of its modern biogeochemical cycle is poorly known. Recent studies on the antiquity of the nitrogen cycle and its interaction with free oxygen suggests the establishment of a complete aerobic N bioge...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2011.00271.x

    authors: Thomazo C,Ader M,Philippot P

    更新日期:2011-03-01 00:00:00

  • Formation of large carbonate concretions in black cherts in the Gufeng Formation (Guadalupian) at Enshi, South China.

    abstract::The formation of carbonate concretions is a cementation process which passively infills the pore spaces within sediments. They record the original environments of deposition and diagenetic conditions of the host rocks. Little is known about the precise mechanisms responsible for the precipitation of carbonate concreti...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12362

    authors: Wei H,Tang Z,Qiu Z,Yan D,Bai M

    更新日期:2020-01-01 00:00:00

  • Carotenoid biomarkers as an imperfect reflection of the anoxygenic phototrophic community in meromictic Fayetteville Green Lake.

    abstract::Organic biomarkers in marine sedimentary rocks hold important clues about the early history of Earth's surface environment. The chemical relicts of carotenoids from anoxygenic sulfur bacteria are of particular interest to geoscientists because of their potential to signal episodes of marine photic-zone euxinia such as...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2011.00285.x

    authors: Meyer KM,Macalady JL,Fulton JM,Kump LR,Schaperdoth I,Freeman KH

    更新日期:2011-07-01 00:00:00

  • Insights into chemotaxonomic composition and carbon cycling of phototrophic communities in an artesian sulfur-rich spring (Zodletone, Oklahoma, USA), a possible analog for ancient microbial mat systems.

    abstract::Zodletone spring in Oklahoma is a unique environment with high concentrations of dissolved-sulfide (10 mm) and short-chain gaseous alkanes, exhibiting characteristics that are reminiscent of conditions that are thought to have existed in Earth's history, in particular the late Archean and early-to-mid Proterozoic. Her...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00268.x

    authors: Bühring SI,Sievert SM,Jonkers HM,Ertefai T,Elshahed MS,Krumholz LR,Hinrichs KU

    更新日期:2011-03-01 00:00:00

  • Hematite-coated microfossils: primary ecological fingerprint or taphonomic oddity of the Paleoproterozoic?

    abstract::Microfossils belonging to the 1.88-billion-year-old 'Gunflint-biota' are preserved as carbonaceous and hematitic filaments and spheres that are believed to represent ancient chemolithoautotrophic Fe(II) oxidizing bacteria that grew above a chemocline where ferruginous seawater upwelled into shallow, oxygenated waters....

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12127

    authors: Shapiro RS,Konhauser KO

    更新日期:2015-05-01 00:00:00

  • Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles.

    abstract::The emplacement of subaqueous gravity-driven sediment flows imposes a significant physical and geochemical impact on underlying sediment and microbial communities. Although previous studies have established lasting mineralogical and biological signatures of turbidite deposition, the response of bacteria and archaea wi...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12271

    authors: Harrison BK,Myrbo A,Flood BE,Bailey JV

    更新日期:2018-03-01 00:00:00

  • Mineralization of Alvinella polychaete tubes at hydrothermal vents.

    abstract::Alvinellid polychaete worms form multilayered organic tubes in the hottest and most rapidly growing areas of deep-sea hydrothermal vent chimneys. Over short periods of time, these tubes can become entirely mineralized within this environment. Documenting the nature of this process in terms of the stages of mineralizat...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12123

    authors: Georgieva MN,Little CT,Ball AD,Glover AG

    更新日期:2015-03-01 00:00:00

  • Evidence for the development of local anoxia during the Cambrian SPICE event in eastern North America.

    abstract::The later Cambrian Steptoean Positive Carbon Isotope Excursion (SPICE) event was an episode marked by pronounced changes to the global biogeochemical cycles of carbon and sulfur and significant extinctions on several paleocontinents including Laurentia (North America). While the exact cause(s) of these events remains ...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12334

    authors: LeRoy MA,Gill BC

    更新日期:2019-07-01 00:00:00

  • Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia.

    abstract::Biogeochemical changes in marine sediments during coastal water hypoxia are well described, but less is known about underlying changes in microbial communities. Bacterial and archaeal communities in Louisiana continental shelf (LCS) hypoxic zone sediments were characterized by pyrosequencing 16S rRNA V4-region gene fr...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12142

    authors: Devereux R,Mosher JJ,Vishnivetskaya TA,Brown SD,Beddick DL Jr,Yates DF,Palumbo AV

    更新日期:2015-09-01 00:00:00

  • Constraining oceanic oxygenation during the Shuram excursion in South China using thallium isotopes.

    abstract::Ediacaran sediments record an unusual global carbon cycle perturbation that has been linked to widespread oceanic oxygenation, the Shuram negative C isotope excursion (NCIE). However, proxy-based estimates of global ocean redox conditions during this event have been limited largely due to proxy specificity (e.g., euxi...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12379

    authors: Fan H,Nielsen SG,Owens JD,Auro M,Shu Y,Hardisty DS,Horner TJ,Bowman CN,Young SA,Wen H

    更新日期:2020-05-01 00:00:00

  • The microbe-mineral environment and gypsum neogenesis in a weathered polar evaporite.

    abstract::Evaporitic deposits are a globally widespread habitat for micro-organisms. The microbe-mineral environment in weathered and remobilized gypsum from exposed mid-Ordovician marine evaporite beds in the polar desert of Devon Island, Nunavut, Canadian High Arctic was examined. The gypsum is characterized by internal green...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/j.1472-4669.2010.00240.x

    authors: Cockell CS,Osinski GR,Banerjee NR,Howard KT,Gilmour I,Watson JS

    更新日期:2010-09-01 00:00:00

  • The co-evolution of phytoplankton and trace element cycles in the oceans.

    abstract::The composition of the oceans and of its biota have influenced each other through Earth's history. Of all the biologically essential elements, nitrogen is the only one whose seawater concentration is clearly controlled biologically; this is presumably the main reason why the stoichiometry of nitrogen (defined as its m...

    journal_title:Geobiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1472-4669.2008.00144.x

    authors: Morel FM

    更新日期:2008-06-01 00:00:00

  • Biogeochemical and physical controls on methane fluxes from two ferruginous meromictic lakes.

    abstract::Meromictic lakes with anoxic bottom waters often have active methane cycles whereby methane is generally produced biogenically under anoxic conditions and oxidized in oxic surface waters prior to reaching the atmosphere. Lakes that contain dissolved ferrous iron in their deep waters (i.e., ferruginous) are rare, but v...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12365

    authors: Lambrecht N,Katsev S,Wittkop C,Hall SJ,Sheik CS,Picard A,Fakhraee M,Swanner ED

    更新日期:2020-01-01 00:00:00

  • Millennial-scale ocean acidification and late Quaternary decline of cryptic bacterial crusts in tropical reefs.

    abstract::Ocean acidification by atmospheric carbon dioxide has increased almost continuously since the last glacial maximum (LGM), 21,000 years ago. It is expected to impair tropical reef development, but effects on reefs at the present day and in the recent past have proved difficult to evaluate. We present evidence that acid...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12097

    authors: Riding R,Liang L,Braga JC

    更新日期:2014-09-01 00:00:00

  • Cr isotopic insights into ca. 1.9 Ga oxidative weathering of the continents using the Beaverlodge Lake paleosol, Northwest Territories, Canada.

    abstract::The ca. 1.9 Ga Beaverlodge Lake paleosol was studied using redox-sensitive Cr isotopes in order to determine the isotopic response to paleoweathering of a rhyodacite parent rock 500 million years after the Great Oxidation Event. Redox reactions occurring in modern weathering environments produce Cr(VI) that is enriche...

    journal_title:Geobiology

    pub_type: 杂志文章

    doi:10.1111/gbi.12342

    authors: Toma J,Holmden C,Shakotko P,Pan Y,Ootes L

    更新日期:2019-09-01 00:00:00