What makes for sound science?

Abstract:

:The inclusive threshold policy for publication in BMC journals including BMC Plant Biology means that editorial decisions are largely based on the soundness of the research presented rather than the novelty or potential impact of the work. Here we discuss what is required to ensure that research meets the requirement of scientific soundness. BMC Plant Biology and the other BCM-series journals ( https://www.biomedcentral.com/p/the-bmc-series-journals ) differ in policy from many other journals as they aim to provide a home for all publishable research. The inclusive threshold policy for publication means that editorial decisions are largely based on the soundness of the research presented rather than the novelty or potential impact of the work. The emphasis on scientific soundness ( http://blogs.biomedcentral.com/bmcseriesblog/2016/12/05/vital-importance-inclusive/ ) rather than novelty or impact is important because it means that manuscripts that may be judged to be of low impact due to the nature of the study as well as those reporting negative results or that largely replicate earlier studies, all of which can be difficult to publish elsewhere, are available to the research community. Here we discuss the importance of the soundness of research and provide some basic guidelines to assist authors to determine whether their research is appropriate for submission to BMC Plant Biology.Prior to a research article being sent out for review, the handling editor will first determine whether the research presented is scientifically valid. To be valid the research must address a question of biological significance using suitable methods and analyses, and must follow community-agreed standards relevant to the research field.

journal_name

BMC Plant Biol

journal_title

BMC plant biology

authors

Costa F,Cramer G,Finnegan EJ

doi

10.1186/s12870-017-1139-7

subject

Has Abstract

pub_date

2017-11-10 00:00:00

pages

196

issue

1

issn

1471-2229

pii

10.1186/s12870-017-1139-7

journal_volume

17

pub_type

社论
  • Natural variation of physiological traits, molecular markers, and chlorophyll catabolic genes associated with heat tolerance in perennial ryegrass accessions.

    abstract:BACKGROUND:Identification of genetic diversity in heat tolerance and associated traits is of great importance for improving heat tolerance in cool-season grass species. The objectives of this study were to determine genetic variations in heat tolerance associated with phenotypic and physiological traits and to identify...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02695-8

    authors: Zhang J,Li H,Jiang Y,Li H,Zhang Z,Xu Z,Xu B,Huang B

    更新日期:2020-11-16 00:00:00

  • Conservation of ciliary proteins in plants with no cilia.

    abstract:BACKGROUND:Eukaryotic cilia are complex, highly conserved microtubule-based organelles with a broad phylogenetic distribution. Cilia were present in the last eukaryotic common ancestor and many proteins involved in cilia function have been conserved through eukaryotic diversification. However, cilia have also been lost...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-11-185

    authors: Hodges ME,Wickstead B,Gull K,Langdale JA

    更新日期:2011-12-30 00:00:00

  • Auxin mediates the touch-induced mechanical stimulation of adventitious root formation under windy conditions in Brachypodium distachyon.

    abstract:BACKGROUND:It is widely perceived that mechanical or thigmomorphogenic stimuli, such as rubbing and bending by passing animals, wind, raindrop, and flooding, broadly influence plant growth and developmental patterning. In particular, wind-driven mechanical stimulation is known to induce the incidence of radial expansio...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02544-8

    authors: Nam BE,Park YJ,Gil KE,Kim JH,Kim JG,Park CM

    更新日期:2020-07-16 00:00:00

  • Natural variation in a CENTRORADIALIS homolog contributed to cluster fruiting and early maturity in cotton.

    abstract:BACKGROUND:Plant architecture and the vegetative-reproductive transition have major impacts on the agronomic success of crop plants, but genetic mechanisms underlying these traits in cotton (Gossypium spp.) have not been identified. RESULTS:We identify four natural mutations in GoCEN-Dt associated with cluster fruitin...

    journal_title:BMC plant biology

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    doi:10.1186/s12870-018-1518-8

    authors: Liu D,Teng Z,Kong J,Liu X,Wang W,Zhang X,Zhai T,Deng X,Wang J,Zeng J,Xiao Y,Guo K,Zhang J,Liu D,Wang W,Zhang Z

    更新日期:2018-11-20 00:00:00

  • Pyramiding, alternating or mixing: comparative performances of deployment strategies of nematode resistance genes to promote plant resistance efficiency and durability.

    abstract:BACKGROUND:Resistant cultivars are key elements for pathogen control and pesticide reduction, but their repeated use may lead to the emergence of virulent pathogen populations, able to overcome the resistance. Increased research efforts, mainly based on theoretical studies, explore spatio-temporal deployment strategies...

    journal_title:BMC plant biology

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    doi:10.1186/1471-2229-14-53

    authors: Djian-Caporalino C,Palloix A,Fazari A,Marteu N,Barbary A,Abad P,Sage-Palloix AM,Mateille T,Risso S,Lanza R,Taussig C,Castagnone-Sereno P

    更新日期:2014-02-22 00:00:00

  • A Glycine max sodium/hydrogen exchanger enhances salt tolerance through maintaining higher Na+ efflux rate and K+/Na+ ratio in Arabidopsis.

    abstract:BACKGROUND:Soybean (Glycine max (L.)) is one the most important oil-yielding cash crops. However, the soybean production has been seriously restricted by salinization. It is therefore crucial to identify salt tolerance-related genes and reveal molecular mechanisms underlying salt tolerance in soybean crops. A better un...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-019-2084-4

    authors: Sun TJ,Fan L,Yang J,Cao RZ,Yang CY,Zhang J,Wang DM

    更新日期:2019-11-05 00:00:00

  • Quantification of the tissue-culture induced variation in barley (Hordeum vulgare L.).

    abstract:BACKGROUND:When plant tissue is passaged through in vitro culture, many regenerated plants appear to be no longer clonal copies of their donor genotype. Among the factors that affect this so-called tissue culture induced variation are explant genotype, explant tissue origin, medium composition, and the length of time i...

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    doi:10.1186/1471-2229-7-10

    authors: Bednarek PT,Orłowska R,Koebner RM,Zimny J

    更新日期:2007-03-02 00:00:00

  • Comparative proteomic and metabolomic profiling of citrus fruit with enhancement of disease resistance by postharvest heat treatment.

    abstract:BACKGROUND:From field harvest to the consumer's table, fresh citrus fruit spends a considerable amount of time in shipment and storage. During these processes, physiological disorders and pathological diseases are the main causes of fruit loss. Heat treatment (HT) has been widely used to maintain fruit quality during p...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-13-44

    authors: Yun Z,Gao H,Liu P,Liu S,Luo T,Jin S,Xu Q,Xu J,Cheng Y,Deng X

    更新日期:2013-03-16 00:00:00

  • The genetic architecture of constitutive and induced trichome density in two new recombinant inbred line populations of Arabidopsis thaliana: phenotypic plasticity, epistasis, and bidirectional leaf damage response.

    abstract:BACKGROUND:Herbivory imposes an important selective pressure on plants. In Arabidopsis thaliana leaf trichomes provide a key defense against insect herbivory; however, trichome production incurs a fitness cost in the absence of herbivory. Previous work on A. thaliana has shown an increase in trichome density in respons...

    journal_title:BMC plant biology

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    doi:10.1186/1471-2229-14-119

    authors: Bloomer RH,Lloyd AM,Symonds VV

    更新日期:2014-05-05 00:00:00

  • Distinctive physiological and molecular responses to cold stress among cold-tolerant and cold-sensitive Pinus halepensis seed sources.

    abstract:BACKGROUND:Forest species ranges are confined by environmental limitations such as cold stress. The natural range shifts of pine forests due to climate change and proactive-assisted population migration may each be constrained by the ability of pine species to tolerate low temperatures, especially in northern latitudes...

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    doi:10.1186/s12870-018-1464-5

    authors: Taïbi K,Del Campo AD,Vilagrosa A,Bellés JM,López-Gresa MP,López-Nicolás JM,Mulet JM

    更新日期:2018-10-16 00:00:00

  • Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens.

    abstract:BACKGROUND:Alternative splicing (AS) involving tandem acceptors that are separated by three nucleotides (NAGNAG) is an evolutionarily widespread class of AS, which is well studied in Homo sapiens (human) and Mus musculus (mouse). It has also been shown to be common in the model seed plants Arabidopsis thaliana and Oryz...

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    doi:10.1186/1471-2229-10-76

    authors: Sinha R,Zimmer AD,Bolte K,Lang D,Reski R,Platzer M,Rensing SA,Backofen R

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  • Comparative characterization of two GDP-mannose dehydrogenase genes from Saccharina japonica (Laminariales, Phaeophyceae).

    abstract:BACKGROUND:Saccharina japonica is an important commercial brown seaweed, its main product is alginate, which is used in food, textile and by the cosmetic and pharmaceutical industries. GDP-mannose dehydrogenase (GMD) is the key enzyme involved in the synthesis of alginate. However, little is known about GMD in S. japon...

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    doi:10.1186/s12870-016-0750-3

    authors: Zhang P,Shao Z,Jin W,Duan D

    更新日期:2016-03-08 00:00:00

  • Global analysis of the MATE gene family of metabolite transporters in tomato.

    abstract:BACKGROUND:Species in the Solanaceae family are known for producing plethora of specialized metabolites. In addition to biosynthesis pathways, a full comprehension of secondary metabolism must also take into account the transport and subcellular compartmentalization of substances. Here, we examined the MATE (Multidrug ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-017-1115-2

    authors: Santos ALD,Chaves-Silva S,Yang L,Maia LGS,Chalfun-Júnior A,Sinharoy S,Zhao J,Benedito VA

    更新日期:2017-10-30 00:00:00

  • Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes.

    abstract:BACKGROUND:Bread wheat is one of the most important crops for the human diet, but the increasing soil salinization is causing yield reductions worldwide. Improving salt stress tolerance in wheat requires the elucidation of the mechanistic basis of plant response to this abiotic stress factor. Although several studies h...

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    doi:10.1186/s12870-020-02616-9

    authors: Duarte-Delgado D,Dadshani S,Schoof H,Oyiga BC,Schneider M,Mathew B,Léon J,Ballvora A

    更新日期:2020-09-16 00:00:00

  • Characterization of the Gh4CL gene family reveals a role of Gh4CL7 in drought tolerance.

    abstract:BACKGROUND:The function of 4-coumarate-CoA ligases (4CL) under abiotic stresses has been studied in plants, however, limited is known about the 4CL genes in cotton (G. hirsutum L.) and their roles in response to drought stress. RESULTS:We performed genome-wide identification of the 4CL genes in G. hirsutum and investi...

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    doi:10.1186/s12870-020-2329-2

    authors: Sun SC,Xiong XP,Zhang XL,Feng HJ,Zhu QH,Sun J,Li YJ

    更新日期:2020-03-23 00:00:00

  • Genome-wide profiling of long non-coding RNAs from tomato and a comparison with mRNAs associated with the regulation of fruit ripening.

    abstract:BACKGROUND:Long non-coding RNAs (lncRNAs) are involved in multiple biological processes in both mammals and plants. There is growing evidence that they are associated with development; but their expression and regulation during fruit ripening in the model plant tomato (Solanum lycopersicum) has yet to be described. RE...

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    更新日期:2018-05-04 00:00:00

  • Identification and characterization of CBL and CIPK gene families in canola (Brassica napus L.).

    abstract:BACKGROUND:Canola (Brassica napus L.) is one of the most important oil-producing crops in China and worldwide. The yield and quality of canola is frequently threatened by environmental stresses including drought, cold and high salinity. Calcium is a ubiquitous intracellular secondary messenger in plants. Calcineurin B-...

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    authors: Zhang H,Yang B,Liu WZ,Li H,Wang L,Wang B,Deng M,Liang W,Deyholos MK,Jiang YQ

    更新日期:2014-01-07 00:00:00

  • Flower development, pollen fertility and sex expression analyses of three sexual phenotypes of Coccinia grandis.

    abstract:BACKGROUND:Coccinia grandis is a dioecious species of Cucurbitaceae having heteromorphic sex chromosomes. The chromosome constitution of male and female plants is 22 + XY and 22 + XX respectively. Y chromosome of male sex is conspicuously large and plays a decisive role in determining maleness. Sex modification has bee...

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    authors: Ghadge AG,Karmakar K,Devani RS,Banerjee J,Mohanasundaram B,Sinha RK,Sinha S,Banerjee AK

    更新日期:2014-11-28 00:00:00

  • Callose (beta-1,3 glucan) is essential for Arabidopsis pollen wall patterning, but not tube growth.

    abstract:BACKGROUND:Callose (beta-1,3 glucan) separates developing pollen grains, preventing their underlying walls (exine) from fusing. The pollen tubes that transport sperm to female gametes also contain callose, both in their walls as well as in the plugs that segment growing tubes. Mutations in CalS5, one of several Arabido...

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    pub_type: 杂志文章

    doi:10.1186/1471-2229-5-22

    authors: Nishikawa S,Zinkl GM,Swanson RJ,Maruyama D,Preuss D

    更新日期:2005-10-07 00:00:00

  • Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves.

    abstract:BACKGROUND:Symptoms of grapevine leafroll disease (GLRD) in red-fruited wine grape (Vitis vinifera L.) cultivars consist of green veins and red and reddish-purple discoloration of inter-veinal areas of leaves. The reddish-purple color of symptomatic leaves may be due to the accumulation of anthocyanins and could reflec...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-187

    authors: Gutha LR,Casassa LF,Harbertson JF,Naidu RA

    更新日期:2010-08-23 00:00:00

  • Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata).

    abstract:BACKGROUND:Pongamia (Millettia pinnata syn. Pongamia pinnata), an oilseed legume species, is emerging as potential feedstock for sustainable biodiesel production. Breeding Pongamia for favorable traits in commercial application will rely on a comprehensive understanding of molecular mechanism regulating oil accumulatio...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-018-1356-8

    authors: Huang J,Hao X,Jin Y,Guo X,Shao Q,Kumar KS,Ahlawat YK,Harry DE,Joshi CP,Zheng Y

    更新日期:2018-07-09 00:00:00

  • Overexpression of tomato SlNAC1 transcription factor alters fruit pigmentation and softening.

    abstract:BACKGROUND:Fruit maturation and ripening are genetically regulated processes that involve a complex interplay of plant hormones, growth regulators and multiple biological and environmental factors. Tomato (Solanum lycopersicum) has been used as a model of biological and genetic studies on the regulation of specific rip...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-014-0351-y

    authors: Ma N,Feng H,Meng X,Li D,Yang D,Wu C,Meng Q

    更新日期:2014-12-10 00:00:00

  • Production of superoxide from Photosystem II in a rice (Oryza sativa L.) mutant lacking PsbS.

    abstract:BACKGROUND:PsbS is a 22-kDa Photosystem (PS) II protein involved in non-photochemical quenching (NPQ) of chlorophyll fluorescence. Rice (Oryza sativa L.) has two PsbS genes, PsbS1 and PsbS2. However, only inactivation of PsbS1, through a knockout (PsbS1-KO) or in RNAi transgenic plants, results in plants deficient in q...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-014-0242-2

    authors: Zulfugarov IS,Tovuu A,Eu YJ,Dogsom B,Poudyal RS,Nath K,Hall M,Banerjee M,Yoon UC,Moon YH,An G,Jansson S,Lee CH

    更新日期:2014-10-24 00:00:00

  • Identification of three MAPKKKs forming a linear signaling pathway leading to programmed cell death in Nicotiana benthamiana.

    abstract:BACKGROUND:The mitogen-activated protein kinase (MAPK) cascade is an evolutionarily ancient mechanism of signal transduction found in eukaryotic cells. In plants, MAPK cascades are associated with responses to various abiotic and biotic stresses such as plant pathogens. MAPK cascades function through sequential phospho...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-12-103

    authors: Hashimoto M,Komatsu K,Maejima K,Okano Y,Shiraishi T,Ishikawa K,Takinami Y,Yamaji Y,Namba S

    更新日期:2012-07-08 00:00:00

  • Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.).

    abstract:BACKGROUND:Chickpea (Cicer arietinum L.) is the second most important grain legume cultivated by resource poor farmers in South Asia and Sub-Saharan Africa. In order to harness the untapped genetic potential available for chickpea improvement, we re-sequenced 35 chickpea genotypes representing parental lines of 16 mapp...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-015-0690-3

    authors: Thudi M,Khan AW,Kumar V,Gaur PM,Katta K,Garg V,Roorkiwal M,Samineni S,Varshney RK

    更新日期:2016-01-27 00:00:00

  • A cytochrome P450 monooxygenase commonly used for negative selection in transgenic plants causes growth anomalies by disrupting brassinosteroid signaling.

    abstract:BACKGROUND:Cytochrome P450 monooxygenases form a large superfamily of enzymes that catalyze diverse reactions. The P450 SU1 gene from the soil bacteria Streptomyces griseolus encodes CYP105A1 which acts on various substrates including sulfonylurea herbicides, vitamin D, coumarins, and based on the work presented here, ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-11-67

    authors: Dasgupta K,Ganesan S,Manivasagam S,Ayre BG

    更新日期:2011-04-15 00:00:00

  • Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death.

    abstract:BACKGROUND:In plants, HIR (Hypersensitive Induced Reaction) proteins, members of the PID (Proliferation, Ion and Death) superfamily, have been shown to play a part in the development of spontaneous hypersensitive response lesions in leaves, in reaction to pathogen attacks. The levels of HIR proteins were shown to corre...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-290

    authors: Zhou L,Cheung MY,Li MW,Fu Y,Sun Z,Sun SM,Lam HM

    更新日期:2010-12-30 00:00:00

  • 'Who's who' in two different flower types of Calluna vulgaris (Ericaceae): morphological and molecular analyses of flower organ identity.

    abstract:BACKGROUND:The ornamental crop Calluna vulgaris is of increasing importance to the horticultural industry in the northern hemisphere due to a flower organ mutation: the flowers of the 'bud-flowering' phenotype remain closed i.e. as buds throughout the total flowering period and thereby maintain more colorful flowers fo...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-9-148

    authors: Borchert T,Eckardt K,Fuchs J,Krüger K,Hohe A

    更新日期:2009-12-14 00:00:00

  • Endophytic Penicillium funiculosum LHL06 secretes gibberellin that reprograms Glycine max L. growth during copper stress.

    abstract:BACKGROUND:Heavy metal pollution in crop fields is one of the major issues in sustainable agriculture production. To improve crop growth and reduce the toxic effects of metals is an ideal strategy. Understanding the resilience of gibberellins producing endophytic fungi associated with crop plants in metal contaminated ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-13-86

    authors: Khan AL,Lee IJ

    更新日期:2013-05-31 00:00:00

  • Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants.

    abstract:BACKGROUND:The phloem of dicotyledonous plants contains specialized P-proteins (phloem proteins) that accumulate during sieve element differentiation and remain parietally associated with the cisternae of the endoplasmic reticulum in mature sieve elements. Wounding causes P-protein filaments to accumulate at the sieve ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-219

    authors: Rüping B,Ernst AM,Jekat SB,Nordzieke S,Reineke AR,Müller B,Bornberg-Bauer E,Prüfer D,Noll GA

    更新日期:2010-10-08 00:00:00