Linking Biosynthetic Gene Clusters to their Metabolites via Pathway- Targeted Molecular Networking.

Abstract:

:The connection of microbial biosynthetic gene clusters to the small molecule metabolites they encode is central to the discovery and characterization of new metabolic pathways with ecological and pharmacological potential. With increasing microbial genome sequence information being deposited into publicly available databases, it is clear that microbes have the coding capacity for many more biologically active small molecules than previously realized. Of increasing interest are the small molecules encoded by the human microbiome, as these metabolites likely mediate a variety of currently uncharacterized human-microbe interactions that influence health and disease. In this mini-review, we describe the ongoing biosynthetic, structural, and functional characterizations of the genotoxic colibactin pathway in gut bacteria as a thematic example of linking biosynthetic gene clusters to their metabolites. We also highlight other natural products that are produced through analogous biosynthetic logic and comment on some current disconnects between bioinformatics predictions and experimental structural characterizations. Lastly, we describe the use of pathway-targeted molecular networking as a tool to characterize secondary metabolic pathways within complex metabolomes and to aid in downstream metabolite structural elucidation efforts.

journal_name

Curr Top Med Chem

authors

Trautman EP,Crawford JM

doi

10.2174/1568026616666151012111046

subject

Has Abstract

pub_date

2016-01-01 00:00:00

pages

1705-16

issue

15

eissn

1568-0266

issn

1873-4294

pii

CTMC-EPUB-70994

journal_volume

16

pub_type

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