Oligocene niche shift, Miocene diversification - cold tolerance and accelerated speciation rates in the St. John's Worts (Hypericum, Hypericaceae).

Abstract:

BACKGROUND:Our aim is to understand the evolution of species-rich plant groups that shifted from tropical into cold/temperate biomes. It is well known that climate affects evolutionary processes, such as how fast species diversify, species range shifts, and species distributions. Many plant lineages may have gone extinct in the Northern Hemisphere due to Late Eocene climate cooling, while some tropical lineages may have adapted to temperate conditions and radiated; the hyper-diverse and geographically widespread genus Hypericum is one of these. RESULTS:To investigate the effect of macroecological niche shifts on evolutionary success we combine historical biogeography with analyses of diversification dynamics and climatic niche shifts in a phylogenetic framework. Hypericum evolved cold tolerance c. 30 million years ago, and successfully colonized all ice-free continents, where today ~500 species exist. The other members of Hypericaceae stayed in their tropical habitats and evolved into ~120 species. We identified a 15-20 million year lag between the initial change in temperature preference in Hypericum and subsequent diversification rate shifts in the Miocene. CONCLUSIONS:Contrary to the dramatic niche shift early in the evolution of Hypericum most extant species occur in temperate climates including high elevations in the tropics. These cold/temperate niches are a distinctive characteristic of Hypericum. We conclude that the initial release from an evolutionary constraint (from tropical to temperate climates) is an important novelty in Hypericum. However, the initial shift in the adaptive landscape into colder climates appears to be a precondition, and may not be directly related to increased diversification rates. Instead, subsequent events of mountain formation and further climate cooling may better explain distribution patterns and species-richness in Hypericum. These findings exemplify important macroevolutionary patterns of plant diversification during large-scale global climate change.

journal_name

BMC Evol Biol

journal_title

BMC evolutionary biology

authors

Nürk NM,Uribe-Convers S,Gehrke B,Tank DC,Blattner FR

doi

10.1186/s12862-015-0359-4

subject

Has Abstract

pub_date

2015-05-06 00:00:00

pages

80

issn

1471-2148

pii

10.1186/s12862-015-0359-4

journal_volume

15

pub_type

杂志文章
  • Population size may shape the accumulation of functional mutations following domestication.

    abstract:BACKGROUND:Population genetics theory predicts an important role of differences in the effective population size (N e ) among species on shaping the accumulation of functional mutations by regulating the selection efficiency. However, this correlation has never been tested in domesticated animals. RESULTS:Here, we syn...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1120-6

    authors: Chen J,Ni P,Li X,Han J,Jakovlić I,Zhang C,Zhao S

    更新日期:2018-01-19 00:00:00

  • Reduced alphabet of prebiotic amino acids optimally encodes the conformational space of diverse extant protein folds.

    abstract:BACKGROUND:There is wide agreement that only a subset of the twenty standard amino acids existed prebiotically in sufficient concentrations to form functional polypeptides. We ask how this subset, postulated as {A,D,E,G,I,L,P,S,T,V}, could have formed structures stable enough to found metabolic pathways. Inspired by al...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1464-6

    authors: Solis AD

    更新日期:2019-07-30 00:00:00

  • Reproductive consequences of an extra long-term sperm storage organ.

    abstract:BACKGROUND:Sperm storage plays a key role in the reproductive success of many sexually-reproducing organisms, and the capacity of long-term sperm storage varies across species. While there are theoretical explanations for why such variation exists, to date there are no controlled empirical tests of the reproductive con...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-020-01704-6

    authors: Dhillon A,Chowdhury T,Morbey YE,Moehring AJ

    更新日期:2020-11-30 00:00:00

  • Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae.

    abstract:BACKGROUND:Volvocine algae provide a suitable model for investigation of the evolution of multicellular organisms. Within this group, evolution of the body plan from flattened to spheroidal colonies is thought to have occurred independently in two different lineages, Volvocaceae and Astrephomene. Volvocacean species un...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1452-x

    authors: Yamashita S,Nozaki H

    更新日期:2019-06-11 00:00:00

  • Reconstructing the muscular ground pattern of phylactolaemate bryozoans: first data from gelatinous representatives.

    abstract:BACKGROUND:Phylactolaemata is commonly regarded the earliest branch within Bryozoa and thus the sister group to the other bryozoan taxa, Cyclostomata and Gymnolaemata. Therefore, the taxon is important for the reconstruction of the bryozoan morphological ground pattern. In this study the myoanatomy of Pectinatella magn...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1068-y

    authors: Gawin N,Wanninger A,Schwaha T

    更新日期:2017-11-07 00:00:00

  • Collective properties of evolving molecular quasispecies.

    abstract:BACKGROUND:RNA molecules, through their dual appearance as sequence and structure, represent a suitable model to study evolutionary properties of quasispecies. The essential ingredient in this model is the differentiation between genotype (molecular sequences which are affected by mutation) and phenotype (molecular str...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-110

    authors: Stich M,Briones C,Manrubia SC

    更新日期:2007-07-09 00:00:00

  • Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.

    abstract:BACKGROUND:Computer-assisted analyses have shown that all bacterial genomes contain a small percentage of open reading frames with a frameshift or in-frame stop codon We report here a comparative analysis of these interrupted coding sequences (ICDSs) in six isolates of M. tuberculosis, two of M. bovis and one of M. afr...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-78

    authors: Deshayes C,Perrodou E,Euphrasie D,Frapy E,Poch O,Bifani P,Lecompte O,Reyrat JM

    更新日期:2008-03-06 00:00:00

  • Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa).

    abstract:BACKGROUND:The Amazon molly (Poecilia formosa) is a small unisexual fish that has been suspected of being threatened by extinction from the stochastic accumulation of slightly deleterious mutations that is caused by Muller's ratchet in non-recombining populations. However, no detailed quantification of the extent of th...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-88

    authors: Loewe L,Lamatsch DK

    更新日期:2008-03-19 00:00:00

  • Proteomic characterization and evolutionary analyses of zona pellucida domain-containing proteins in the egg coat of the cephalochordate, Branchiostoma belcheri.

    abstract:BACKGROUND:Zona pellucida domain-containing proteins (ZP proteins) have been identified as the principle constituents of the egg coat (EC) of diverse metazoan taxa, including jawed vertebrates, urochordates and molluscs that span hundreds of millions of years of evolutionary divergence. Although ZP proteins generally c...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-239

    authors: Xu Q,Li G,Cao L,Wang Z,Ye H,Chen X,Yang X,Wang Y,Chen L

    更新日期:2012-12-08 00:00:00

  • Leaps and bounds: geographical and ecological distance constrained the colonisation of the Afrotemperate by Erica.

    abstract:BACKGROUND:The coincidence of long distance dispersal (LDD) and biome shift is assumed to be the result of a multifaceted interplay between geographical distance and ecological suitability of source and sink areas. Here, we test the influence of these factors on the dispersal history of the flowering plant genus Erica ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1545-6

    authors: Pirie MD,Kandziora M,Nürk NM,Le Maitre NC,Mugrabi de Kuppler A,Gehrke B,Oliver EGH,Bellstedt DU

    更新日期:2019-12-05 00:00:00

  • Ecological niche and phylogeography elucidate complex biogeographic patterns in Loxosceles rufescens (Araneae, Sicariidae) in the Mediterranean Basin.

    abstract:BACKGROUND:Understanding the evolutionary history of morphologically cryptic species complexes is difficult, and made even more challenging when geographic distributions have been modified by human-mediated dispersal. This situation is common in the Mediterranean Basin where, aside from the environmental heterogeneity ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0195-y

    authors: Planas E,Saupe EE,Lima-Ribeiro MS,Peterson AT,Ribera C

    更新日期:2014-10-09 00:00:00

  • Osteohistological variation in growth marks and osteocyte lacunar density in a theropod dinosaur (Coelurosauria: Ornithomimidae).

    abstract:BACKGROUND:Osteohistological examinations of fossil vertebrates have utilized a number of proxies, such as counts and spacing of lines of arrested growth (LAGs) and osteocyte lacunar densities (OLD), in order to make inferences related to skeletochronology and mass-specific growth rates. However, many of these studies ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0231-y

    authors: Cullen TM,Evans DC,Ryan MJ,Currie PJ,Kobayashi Y

    更新日期:2014-11-25 00:00:00

  • 3D shape analyses of extant primate and fossil hominin vertebrae support the ancestral shape hypothesis for intervertebral disc herniation.

    abstract:BACKGROUND:Recently we proposed an evolutionary explanation for a spinal pathology that afflicts many people, intervertebral disc herniation (Plomp et al. [2015] BMC Evolutionary Biology 15, 68). Using 2D data, we found that the bodies and pedicles of lower vertebrae of pathological humans were more similar in shape to...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1550-9

    authors: Plomp KA,Dobney K,Weston DA,Strand Viðarsdóttir U,Collard M

    更新日期:2019-12-16 00:00:00

  • Sex differences in the genetic architecture of lifespan in a seed beetle: extreme inbreeding extends male lifespan.

    abstract:BACKGROUND:Sex differences in lifespan are ubiquitous throughout the animal kingdom but the causes underlying this phenomenon remain poorly understood. Several explanations based on asymmetrical inheritance patterns (sex chromosomes or mitochondrial DNA) have been proposed, but these ideas have rarely been tested exper...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-33

    authors: Bilde T,Maklakov AA,Meisner K,la Guardia L,Friberg U

    更新日期:2009-02-06 00:00:00

  • Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura.

    abstract:BACKGROUND:Transposable elements (TEs) constitute a substantial amount of all eukaryotic genomes. They induce an important proportion of deleterious mutations by insertion into genes or gene regulatory regions. However, their mutational capabilities are not always adverse but can contribute to the genetic diversity and...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-234

    authors: García Guerreiro MP,Chávez-Sandoval BE,Balanyà J,Serra L,Fontdevila A

    更新日期:2008-08-14 00:00:00

  • Sexual conflict over the duration of copulation in Drosophila montana: why is longer better?

    abstract:BACKGROUND:Conflicts of interest between the sexes are increasingly recognized as an engine driving the (co-)evolution of reproductive traits. The reproductive behaviour of Drosophila montana suggests the occurrence of sexual conflict over the duration of copulation. During the last stages of copulation, females vigoro...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-132

    authors: Mazzi D,Kesäniemi J,Hoikkala A,Klappert K

    更新日期:2009-06-12 00:00:00

  • Phylogeography of Diptychus maculatus (Cyprinidae) endemic to the northern margin of the QTP and Tien Shan region.

    abstract:BACKGROUND:Phylogeography and historical demography of the cyprinid fish Diptychus maculatus (subfamily Schizothoracinae) are evaluated across three river systems in the Northern Qinghai-Tibetan Plateau (QTP) and Tien Shan range: the Indus River, Tarim River and Ili River. RESULTS:Results from both mtDNA (16S rRNA, Cy...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0756-3

    authors: Li G,Tang Y,Zhang R,Zhao K

    更新日期:2016-09-09 00:00:00

  • A genetic polymorphism evolving in parallel in two cell compartments and in two clades.

    abstract:BACKGROUND:The enzyme phosphoenolpyruvate carboxykinase, PEPCK, occurs in its guanosine-nucleotide-using form in animals and a few prokaryotes. We study its natural genetic variation in Colias (Lepidoptera, Pieridae). PEPCK offers a route, alternative to pyruvate kinase, for carbon skeletons to move between cytosolic g...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-9

    authors: Watt WB,Hudson RR,Wang B,Wang E

    更新日期:2013-01-12 00:00:00

  • Temporal genomic evolution of bird sex chromosomes.

    abstract:BACKGROUND:Sex chromosomes exhibit many unusual patterns in sequence and gene expression relative to autosomes. Birds have evolved a female heterogametic sex system (male ZZ, female ZW), through stepwise suppression of recombination between chrZ and chrW. To address the broad patterns and complex driving forces of Z ch...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0250-8

    authors: Wang Z,Zhang J,Yang W,An N,Zhang P,Zhang G,Zhou Q

    更新日期:2014-12-12 00:00:00

  • An ancient history of gene duplications, fusions and losses in the evolution of APOBEC3 mutators in mammals.

    abstract:BACKGROUND:The APOBEC3 (A3) genes play a key role in innate antiviral defense in mammals by introducing directed mutations in the DNA. The human genome encodes for seven A3 genes, with multiple splice alternatives. Different A3 proteins display different substrate specificity, but the very basic question on how discern...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-71

    authors: Münk C,Willemsen A,Bravo IG

    更新日期:2012-05-28 00:00:00

  • Genome-wide acceleration of protein evolution in flies (Diptera).

    abstract:BACKGROUND:The rate of molecular evolution varies widely between proteins, both within and among lineages. To what extent is this variation influenced by genome-wide, lineage-specific effects? To answer this question, we assess the rate variation between insect lineages for a large number of orthologous genes. RESULTS...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-6-7

    authors: Savard J,Tautz D,Lercher MJ

    更新日期:2006-01-25 00:00:00

  • Parallel loss of introns in the ABCB1 gene in angiosperms.

    abstract:BACKGROUND:The presence of non-coding introns is a characteristic feature of most eukaryotic genes. While the size of the introns, number of introns per gene and the number of intron-containing genes can vary greatly between sequenced eukaryotic genomes, the structure of a gene with reference to intron presence and pos...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1077-x

    authors: Parvathaneni RK,DeLeo VL,Spiekerman JJ,Chakraborty D,Devos KM

    更新日期:2017-12-04 00:00:00

  • Molecular evolution of Adh and LEAFY and the phylogenetic utility of their introns in Pyrus (Rosaceae).

    abstract:BACKGROUND:The genus Pyrus belongs to the tribe Pyreae (the former subfamily Maloideae) of the family Rosaceae, and includes one of the most important commercial fruit crops, pear. The phylogeny of Pyrus has not been definitively reconstructed. In our previous efforts, the internal transcribed spacer region (ITS) revea...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-255

    authors: Zheng X,Hu C,Spooner D,Liu J,Cao J,Teng Y

    更新日期:2011-09-14 00:00:00

  • What defines an adaptive radiation? Macroevolutionary diversification dynamics of an exceptionally species-rich continental lizard radiation.

    abstract:BACKGROUND:Adaptive radiation theory posits that ecological opportunity promotes rapid proliferation of phylogenetic and ecological diversity. Given that adaptive radiation proceeds via occupation of available niche space in newly accessed ecological zones, theory predicts that: (i) evolutionary diversification follows...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0435-9

    authors: Pincheira-Donoso D,Harvey LP,Ruta M

    更新日期:2015-08-07 00:00:00

  • Selecting optimal partitioning schemes for phylogenomic datasets.

    abstract:BACKGROUND:Partitioning involves estimating independent models of molecular evolution for different subsets of sites in a sequence alignment, and has been shown to improve phylogenetic inference. Current methods for estimating best-fit partitioning schemes, however, are only computationally feasible with datasets of fe...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-82

    authors: Lanfear R,Calcott B,Kainer D,Mayer C,Stamatakis A

    更新日期:2014-04-17 00:00:00

  • Acetylcholinesterase alterations reveal the fitness cost of mutations conferring insecticide resistance.

    abstract:BACKGROUND:Insecticide resistance is now common in insects due to the frequent use of chemicals to control them, which provides a useful tool to study the adaptation of eukaryotic genome to new environments. Although numerous potential mutations may provide high level of resistance, only few alleles are found in insect...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-4-5

    authors: Shi MA,Lougarre A,Alies C,Frémaux I,Tang ZH,Stojan J,Fournier D

    更新日期:2004-02-06 00:00:00

  • Beneficial laggards: multilevel selection, cooperative polymorphism and division of labour in threshold public good games.

    abstract:BACKGROUND:The origin and stability of cooperation is a hot topic in social and behavioural sciences. A complicated conundrum exists as defectors have an advantage over cooperators, whenever cooperation is costly so consequently, not cooperating pays off. In addition, the discovery that humans and some animal populatio...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-336

    authors: Boza G,Számadó S

    更新日期:2010-11-02 00:00:00

  • Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment.

    abstract:BACKGROUND:The past decade has witnessed remarkable progress towards resolution of the Tree of Life. However, despite the increased use of genomic scale datasets, some phylogenetic relationships remain difficult to resolve. Here we employ anchored phylogenomics to capture 107 nuclear loci in 29 species of acanthomorph ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0415-0

    authors: Eytan RI,Evans BR,Dornburg A,Lemmon AR,Lemmon EM,Wainwright PC,Near TJ

    更新日期:2015-06-14 00:00:00

  • Hermaphrodite life history and the maintenance of partial selfing in experimental populations of Caenorhabditis elegans.

    abstract:BACKGROUND:Classic population genetics theory predicts that mixed reproductive systems, where self reproduction (selfing) and outcrossing co-exist, should not be as common as they are in nature. One means of reconciling theory with observations is to recognize that sexual conflict between males and hermaphrodites and/o...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-117

    authors: Carvalho S,Phillips PC,Teotónio H

    更新日期:2014-06-02 00:00:00

  • The first identification of complete Eph-ephrin signalling in ctenophores and sponges reveals a role for neofunctionalization in the emergence of signalling domains.

    abstract:BACKGROUND:Animals have a greater diversity of signalling pathways than their unicellular relatives, consistent with the evolution and expansion of these pathways occurring in parallel with the origin of animal multicellularity. However, the genomes of sponges and ctenophores - non-bilaterian basal animals - typically ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1418-z

    authors: Krishnan A,Degnan BM,Degnan SM

    更新日期:2019-04-25 00:00:00