HackaMol: An Object-Oriented Modern Perl Library for Molecular Hacking on Multiple Scales.

Abstract:

:HackaMol is an open source, object-oriented toolkit written in Modern Perl that organizes atoms within molecules and provides chemically intuitive attributes and methods. The library consists of two components: HackaMol, the core that contains classes for storing and manipulating molecular information, and HackaMol::X, the extensions that use the core. The core is well-tested, well-documented, and easy to install across computational platforms. The goal of the extensions is to provide a more flexible space for researchers to develop and share new methods. In this application note, we provide a description of the core classes and two extensions: HackaMol::X::Calculator, an abstract calculator that uses code references to generalize interfaces with external programs, and HackaMol::X::Vina, a structured class that provides an interface with the AutoDock Vina docking program.

journal_name

J Chem Inf Model

authors

Riccardi D,Parks JM,Johs A,Smith JC

doi

10.1021/ci500359e

subject

Has Abstract

pub_date

2015-04-27 00:00:00

pages

721-6

issue

4

eissn

1549-9596

issn

1549-960X

journal_volume

55

pub_type

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