Turtle origins: insights from phylogenetic retrofitting and molecular scaffolds.

Abstract:

:Adding new taxa to morphological phylogenetic analyses without substantially revising the set of included characters is a common practice, with drawbacks (undersampling of relevant characters) and potential benefits (character selection is not biased by preconceptions over the affinities of the 'retrofitted' taxon). Retrofitting turtles (Testudines) and other taxa to recent reptile phylogenies consistently places turtles with anapsid-grade parareptiles (especially Eunotosaurus and/or pareiasauromorphs), under both Bayesian and parsimony analyses. This morphological evidence for turtle-parareptile affinities appears to contradict the robust genomic evidence that extant (living) turtles are nested within diapsids as sister to extant archosaurs (birds and crocodilians). However, the morphological data are almost equally consistent with a turtle-archosaur clade: enforcing this molecular scaffold onto the morphological data does not greatly increase tree length (parsimony) or reduce likelihood (Bayesian inference). Moreover, under certain analytic conditions, Eunotosaurus groups with turtles and thus also falls within the turtle-archosaur clade. This result raises the possibility that turtles could simultaneously be most closely related to a taxon traditionally considered a parareptile (Eunotosaurus) and still have archosaurs as their closest extant sister group.

journal_name

J Evol Biol

authors

Lee MS

doi

10.1111/jeb.12268

subject

Has Abstract

pub_date

2013-12-01 00:00:00

pages

2729-38

issue

12

eissn

1010-061X

issn

1420-9101

journal_volume

26

pub_type

杂志文章
  • Experimental evidence of early costs of reproduction in conspecific viviparous and oviparous lizards.

    abstract::Reproduction entails costs, and disentangling the relative importance of each stage of the reproductive cycle may be important to assess the costs and benefits of different reproductive strategies. We studied the early costs of reproduction in oviparous and viviparous lizard females of the bimodal reproductive species...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2012.02518.x

    authors: Bleu J,Heulin B,Haussy C,Meylan S,Massot M

    更新日期:2012-07-01 00:00:00

  • Co-inheritance of sea age at maturity and iteroparity in the Atlantic salmon vgll3 genomic region.

    abstract::Co-inheritance in life-history traits may result in unpredictable evolutionary trajectories if not accounted for in life-history models. Iteroparity (the reproductive strategy of reproducing more than once) in Atlantic salmon (Salmo salar) is a fitness trait with substantial variation within and among populations. In ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.13418

    authors: Aykanat T,Ozerov M,Vähä JP,Orell P,Niemelä E,Erkinaro J,Primmer CR

    更新日期:2019-04-01 00:00:00

  • Divergence in mating signals correlates with genetic distance and behavioural responses to playback.

    abstract::Animals use acoustic signals to defend resources against rivals and attract breeding partners. As with many biological traits, acoustic signals may reflect ancestry; closely related species often produce more similar signals than do distantly related species. Whether this similarity in acoustic signals is biologically...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12782

    authors: Sosa-López JR,Martínez Gómez JE,Mennill DJ

    更新日期:2016-02-01 00:00:00

  • Social competition, corticosterone and survival in female lizard morphs.

    abstract::We examined the selective consequences of variation in behaviour and endocrine physiology in two female throat-colour morphs of the lizard, Uta stansburiana in the wild. Female morphs differed in home-range distribution patterns and corticosterone levels in relation to the density and frequency of their female neighbo...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1046/j.1420-9101.2003.00598.x

    authors: Comendant T,Sinervo B,Svensson EI,Wingfield J

    更新日期:2003-09-01 00:00:00

  • Elevational speciation in action? Restricted gene flow associated with adaptive divergence across an altitudinal gradient.

    abstract::Evolutionary theory predicts that divergent selection pressures across elevational gradients could cause adaptive divergence and reproductive isolation in the process of ecological speciation. Although there is substantial evidence for adaptive divergence across elevation, there is less evidence that this restricts ge...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12760

    authors: Funk WC,Murphy MA,Hoke KL,Muths E,Amburgey SM,Lemmon EM,Lemmon AR

    更新日期:2016-02-01 00:00:00

  • Ecological speciation in sympatric palms: 1. Gene expression, selection and pleiotropy.

    abstract::Ecological speciation requires divergent selection, reproductive isolation and a genetic mechanism to link the two. We examined the role of gene expression and coding sequence evolution in this process using two species of Howea palms that have diverged sympatrically on Lord Howe Island, Australia. These palms are ass...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12895

    authors: Dunning LT,Hipperson H,Baker WJ,Butlin RK,Devaux C,Hutton I,Igea J,Papadopulos AS,Quan X,Smadja CM,Turnbull CG,Savolainen V

    更新日期:2016-08-01 00:00:00

  • Relatedness affects competitive performance of a parasitic plant (Cuscuta europaea) in multiple infections.

    abstract::Theoretical models predict that parasite relatedness affects the outcome of competition between parasites, and the evolution of parasite virulence. We examined whether parasite relatedness affects competition between parasitic plants (Cuscuta europaea) that share common host plants (Urtica dioica). We infected hosts w...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2004.00728.x

    authors: Puustinen S,Koskela T,Mutikainen P

    更新日期:2004-07-01 00:00:00

  • Experimental evidence that high levels of inbreeding depress sperm competitiveness.

    abstract::The effects of inbreeding on sperm quantity and quality are among the most dramatic examples of inbreeding depression. The extent to which inbreeding depression results in decreased fertilization success of a male's sperm, however, remains largely unknown. This task is made more difficult by the fact that other factor...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2009.01738.x

    authors: Zajitschek SR,Lindholm AK,Evans JP,Brooks RC

    更新日期:2009-06-01 00:00:00

  • A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination.

    abstract::Current advances in genetic analysis are opening up our knowledge of the genetics of species differences, but challenges remain, particularly for out-bred natural populations. We constructed a microsatellite-based linkage map for two out-bred lines of Drosophila montana derived from divergent populations by taking adv...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2009.01916.x

    authors: Schäfer MA,Mazzi D,Klappert K,Kauranen H,Vieira J,Hoikkala A,Ritchie MG,Schlötterer C

    更新日期:2010-03-01 00:00:00

  • Mobile DNA can drive lineage extinction in prokaryotic populations.

    abstract::Natural selection ultimately acts on genes and other DNA sequences. Adaptations that are good for the gene can have adverse effects at higher levels of organization, including the individual or the population. Mobile genetic elements illustrate this principle well, because they can self-replicate within a genome at a ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2010.02106.x

    authors: Rankin DJ,Bichsel M,Wagner A

    更新日期:2010-11-01 00:00:00

  • Hemiclonal analysis reveals significant genetic, environmental and genotype x environment effects on sperm size in Drosophila melanogaster.

    abstract::Spermatozoa are the most diverse of all animal cells. Variation in size alone is enormous and yet there are still no clear evolutionary explanations that can account for such diversity. The basic genetics of sperm form is also poorly understood, although sperm size is known to have a strong genetic component. Here, us...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2008.01585.x

    authors: Morrow EH,Leijon A,Meerupati A

    更新日期:2008-11-01 00:00:00

  • Ploidy evolution in the yeast Saccharomyces cerevisiae: a test of the nutrient limitation hypothesis.

    abstract::The nutrient limitation hypothesis provides a nongenetic explanation for the evolution of life cycles that retain both haploid and diploid phases: differences in nutrient requirements and uptake allow haploids to override the potential genetic advantages provided by diploidy under certain nutrient limiting conditions....

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1046/j.1420-9101.2001.00245.x

    authors: Mable BK

    更新日期:2001-01-08 00:00:00

  • Species range expansion by beneficial mutations.

    abstract::A species' range can be limited when there is no genetic variation for a trait that allows for adaptation to more extreme environments. We study how range expansion occurs by the establishment of a new mutation that affects a quantitative trait in a spatially continuous population. The optimal phenotype for the trait ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2010.02195.x

    authors: Behrman KD,Kirkpatrick M

    更新日期:2011-03-01 00:00:00

  • Heritability of anti-predatory traits: vigilance and locomotor performance in marmots.

    abstract::Animals must allocate some proportion of their time to detecting predators. In birds and mammals, such anti-predator vigilance has been well studied, and we know that it may be influenced by a variety of intrinsic and extrinsic factors. Despite hundreds of studies focusing on vigilance and suggestions that there are i...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2010.01967.x

    authors: Blumstein DT,Lea AJ,Olson LE,Martin JG

    更新日期:2010-05-01 00:00:00

  • Why wait? Three mechanisms selecting for environment-dependent developmental delays.

    abstract::Many species delay development unless particular environments or rare disturbance events occur. How can such a strategy be favoured over continued development? Typically, it is assumed that continued development (e.g. germination) is not advantageous in environments that have low juvenile/seedling survival (mechanism ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12474

    authors: Scott MF,Otto SP

    更新日期:2014-10-01 00:00:00

  • Reinforcement of mate preference among hybridizing Heliconius butterflies.

    abstract::Recent models of mate preference evolution suggest that direct selection on alleles at preference loci and correlated evolution of preference with locally adapted mating cues are more likely to drive the evolution of assortative mate preference than reinforcement. Mate preference evolution in mimetic Heliconius butter...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2006.01198.x

    authors: Kronforst MR,Young LG,Gilbert LE

    更新日期:2007-01-01 00:00:00

  • Brain size predicts behavioural plasticity in guppies (Poecilia reticulata): An experiment.

    abstract::Understanding how animal personality (consistent between-individual behavioural differences) arises has become a central topic in behavioural sciences. This endeavour is complicated by the fact that not only the mean behaviour of individuals (behavioural type) but also the strength of their reaction to environmental c...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.13405

    authors: Herczeg G,Urszán TJ,Orf S,Nagy G,Kotrschal A,Kolm N

    更新日期:2019-03-01 00:00:00

  • Cryptic female choice via sperm dumping favours male copulatory courtship in a spider.

    abstract::Males of many animals perform 'copulatory courtship' during copulation, but the possible reproductive significance of this behaviour has seldom been investigated. In some animals, including the spider Physocyclus globosus (Pholcidae), the female discards sperm during or immediately following some copulations. In this ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2009.01900.x

    authors: Peretti AV,Eberhard WG

    更新日期:2010-02-01 00:00:00

  • The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the trait mean to selection.

    abstract::Theoretical and empirical results demonstrate that the G-matrix, which summarizes additive genetic variances and covariances of quantitative traits, changes over time. Such evolution and fluctuation of the G-matrix could potentially have wide-ranging effects on phenotypic evolution. Nevertheless, no studies have yet a...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2012.02598.x

    authors: Jones AG,Bürger R,Arnold SJ,Hohenlohe PA,Uyeda JC

    更新日期:2012-11-01 00:00:00

  • Evolution in the sabre-tooth cat, Smilodon fatalis, in response to Pleistocene climate change.

    abstract::The late Pleistocene was a time of environmental change, culminating in an extinction event. Few fossil localities record a temporal series of carnivore fossil populations from this interesting interval as well as Rancho La Brea (RLB). We analysed mandibles of Smilodon fatalis from RLB using 2-D geometric morphometric...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12340

    authors: Meachen JA,O'Keefe FR,Sadleir RW

    更新日期:2014-04-01 00:00:00

  • Male-male competition, female mate choice and their interaction: determining total sexual selection.

    abstract::Empirical studies of sexual selection typically focus on one of the two mechanisms of sexual selection without integrating these into a description of total sexual selection, or study total sexual selection without quantifying the contributions of all of the mechanisms of sexual selection. However, this can provide an...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1420-9101.2008.01633.x

    authors: Hunt J,Breuker CJ,Sadowski JA,Moore AJ

    更新日期:2009-01-01 00:00:00

  • Moving to mate: the evolution of separate and combined sexes in multicellular organisms.

    abstract::Which conditions favour the evolution of hermaphroditism or separate sexes? One classical hypothesis states that an organism's mode of locomotion (if any) when searching for a mate should influence breeding system evolution. We used published phylogenies to reconstruct evolutionary changes in adult mate-search efficie...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2008.01524.x

    authors: Eppley SM,Jesson LK

    更新日期:2008-05-01 00:00:00

  • Supertree analyses of the roles of viviparity and habitat in the evolution of atherinomorph fishes.

    abstract::Using supertree phylogenetic reconstructions, we investigate how livebearing and freshwater adaptations may have shaped evolutionary patterns in the Atherinomorpha, a large clade (approximately 1500 extant species) of ray-finned fishes. Based on maximum parsimony reconstructions, livebearing appears to have evolved at...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2005.01060.x

    authors: Mank JE,Avise JC

    更新日期:2006-05-01 00:00:00

  • Mother's curse and indirect genetic effects: Do males matter to mitochondrial genome evolution?

    abstract::Maternal inheritance of mitochondrial DNA (mtDNA) was originally thought to prevent any response to selection on male phenotypic variation attributable to mtDNA, resulting in a male-biased mtDNA mutation load ("mother's curse"). However, the theory underpinning this claim implicitly assumes that a male's mtDNA has no ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.13561

    authors: Keaney TA,Wong HWS,Dowling DK,Jones TM,Holman L

    更新日期:2020-02-01 00:00:00

  • One size fits all? Determinants of sperm transfer in a highly dimorphic orb-web spider.

    abstract::The evolutionary significance of widespread hypo-allometric scaling of genital traits in combination with rapid interspecific genital trait divergence has been of key interest to evolutionary biologists for many years and remains poorly understood. Here, we provide a detailed assessment of quantitative genital trait v...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.12848

    authors: Assis BA,Foellmer MW

    更新日期:2016-06-01 00:00:00

  • Mutualism, market effects and partner control.

    abstract::Intraspecific cooperation and interspecific mutualism often feature a marked asymmetry in the scope for exploitation. Cooperation may nevertheless persist despite one-sided opportunities for cheating, provided that the partner vulnerable to exploitation has sufficient control over the duration of interaction. The effe...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2008.01505.x

    authors: Johnstone RA,Bshary R

    更新日期:2008-05-01 00:00:00

  • Variation in natural selection for growth and phlorotannins in the brown alga Fucus vesiculosus.

    abstract::Directional selection for plant traits associated with resistance to herbivory tends to eliminate genetic variation in such traits. On the other hand, balancing selection arising from trade-offs between resistance and growth or spatially variable selection acts against the elimination of genetic variation. We explore ...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2004.00715.x

    authors: Jormalainen V,Honkanen T

    更新日期:2004-07-01 00:00:00

  • Grab my tail: evolution of dazzle stripes and colourful tails in lizards.

    abstract::Understanding the functions of animal coloration has been a long-standing question in evolutionary biology. For example, the widespread occurrence of striking longitudinal stripes and colourful tails in lizards begs for an explanation. Experiments have suggested that colourful tails can deflect attacks towards the tai...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/jeb.13364

    authors: Murali G,Merilaita S,Kodandaramaiah U

    更新日期:2018-11-01 00:00:00

  • Do female black field crickets Teleogryllus commodus benefit from polyandry?

    abstract::Female insects that mate multiply tend to have increased lifetime fitness, apparently because of greater access to male-derived resources (e.g. sperm, nuptial gifts) that elevate fertility/fecundity. Experiments that standardize the number of matings per female also show that polyandry can improve aspects of offspring...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2007.01333.x

    authors: Jennions MD,Drayton JM,Brooks R,Hunt J

    更新日期:2007-07-01 00:00:00

  • An inclusive fitness analysis of altruism on a cyclical network.

    abstract::A recent model studies the evolution of cooperation on a network, and concludes with a result connecting the benefits and costs of interactions and the number of neighbours. Here, an inclusive fitness analysis is conducted of the only case solved analytically, of a cycle, and the identical result is obtained. This bri...

    journal_title:Journal of evolutionary biology

    pub_type: 杂志文章

    doi:10.1111/j.1420-9101.2007.01413.x

    authors: Grafen A

    更新日期:2007-11-01 00:00:00