The contribution of atom accessibility to site of metabolism models for cytochromes P450.

Abstract:

:Three different types of atom accessibility descriptors are investigated in relation to site of metabolism predictions. To enable the integration of local accessibility we have constructed 2DSASA, a method for the calculation of the atomic solvent accessible surface area that is independent of 3D coordinates. The method was implemented in the SMARTCyp site of metabolism prediction models and improved the results by up to 4 percentage points for nine cytochrome P450 isoforms. The final models are made available at http://www.farma.ku.dk/smartcyp.

journal_name

Mol Pharm

journal_title

Molecular pharmaceutics

authors

Rydberg P,Rostkowski M,Gloriam DE,Olsen L

doi

10.1021/mp3005116

subject

Has Abstract

pub_date

2013-04-01 00:00:00

pages

1216-23

issue

4

eissn

1543-8384

issn

1543-8392

journal_volume

10

pub_type

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