PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics.

abstract：BACKGROUND:Shoot architecture is fundamentally crucial to crop growth and productivity. As a key component of shoot architecture, plant height is known to be controlled by both genetic and environmental factors, though specific details remain scarce. RESULTS:In this study, 308 representative soybean lines from a core ...

journal_title：BMC plant biology

authors： Yang Q,Lin G,Lv H,Wang C,Yang Y,Liao H

更新日期：2021-01-25 00:00:00

abstract：BACKGROUND:Cytochrome P450 monooxygenases form a large superfamily of enzymes that catalyze diverse reactions. The P450 SU1 gene from the soil bacteria Streptomyces griseolus encodes CYP105A1 which acts on various substrates including sulfonylurea herbicides, vitamin D, coumarins, and based on the work presented here, ...

journal_title：BMC plant biology

authors： Dasgupta K,Ganesan S,Manivasagam S,Ayre BG

更新日期：2011-04-15 00:00:00

abstract：BACKGROUND:When photosynthetic organisms are exposed to harsh environmental conditions such as high light intensities or cold stress, the production of reactive oxygen species like singlet oxygen is stimulated in the chloroplast. In Chlamydomonas reinhardtii singlet oxygen was shown to act as a specific signal inducing...

journal_title：BMC plant biology

authors： Fischer BB,Eggen RI,Niyogi KK

更新日期：2010-12-17 00:00:00

abstract：BACKGROUND:N6-Methyladenosine (m6A) is the most widespread RNA modification that plays roles in the regulation of genes and genome stability. YT521-B homology (YTH) domain-containing RNA-binding proteins are important RNA binding proteins that affect the fate of m6A-containing RNA by binding m6A. Little is known about ...

journal_title：BMC plant biology

authors： Sun J,Bie XM,Wang N,Zhang XS,Gao XQ

更新日期：2020-06-23 00:00:00

abstract：BACKGROUND:Elytrigia lolioides (Kar. et Kir.) Nevski, which is a perennial, cross-pollinating wheatgrass that is distributed in Russia and Kazakhstan, is classified into Elytrigia, Elymus, and Lophopyrum genera by taxonomists on the basis of different taxonomic classification systems. However, the genomic constitution ...

journal_title：BMC plant biology

authors： Wang L,Jiang Y,Shi Q,Wang Y,Sha L,Fan X,Kang H,Zhang H,Sun G,Zhang L,Zhou Y

更新日期：2019-04-25 00:00:00

abstract：BACKGROUND:Vacuolar type H+-ATPases play a critical role in the maintenance of vacuolar homeostasis in plant cells. V-ATPases are also involved in plants' defense against environmental stress. This research examined the expression and regulation of the catalytic subunit of the vacuolar type H+-ATPase in Arabidopsis tha...

journal_title：BMC plant biology

authors： Magnotta SM,Gogarten JP

更新日期：2002-04-02 00:00:00

abstract：BACKGROUND:We present a new methylation-sensitive amplified polymorphism (MSAP) approach for the evaluation of relative quantitative characteristics such as demethylation, de novo methylation, and preservation of methylation status of CCGG sequences, which are recognized by the isoschizomers HpaII and MspI. We applied ...

journal_title：BMC plant biology

authors： Bednarek PT,Orłowska R,Niedziela A

更新日期：2017-04-21 00:00:00

abstract：BACKGROUND:Flowering at an appropriate time is crucial for seed maturity and reproductive success in all flowering plants. Soybean (Glycine max) is a typical short day plant, and both photoperiod and autonomous pathway genes exist in soybean genome. However, little is known about the functions of soybean autonomous pat...

journal_title：BMC plant biology

authors： Hu Q,Jin Y,Shi H,Yang W

更新日期：2014-10-07 00:00:00

abstract：BACKGROUND:The Hessian fly (Mayetiola destructor), belonging to the gall midge family (Cecidomyiidae), is a devastating pest of wheat (Triticum aestivum) causing significant yield losses. Despite identification and characterization of numerous Hessian fly-responsive genes and associated biological pathways involved in ...

journal_title：BMC plant biology

authors： Nemacheck JA,Schemerhorn BJ,Scofield SR,Subramanyam S

更新日期：2019-10-22 00:00:00

abstract：BACKGROUND:Proper development of plastids in embryo and seedling tissues is critical for plant development. During germination, plastids develop to perform many critical functions that are necessary to establish the seedling for further growth. A growing body of work has demonstrated that components of the plastid tran...

journal_title：BMC plant biology

authors： Ruppel NJ,Hangarter RP

更新日期：2007-07-13 00:00:00

abstract：BACKGROUND:Cotton fibre quality traits such as fibre length, strength, and degree of maturation are determined by genotype and environment during the sequential phases of cotton fibre development (cell elongation, transition to secondary cell wall construction and cellulose deposition). The cotton fibre middle lamella ...

journal_title：BMC plant biology

authors： Hernandez-Gomez MC,Runavot JL,Meulewaeter F,Knox JP

更新日期：2017-03-31 00:00:00

abstract：BACKGROUND:The identification of QTL involved in heterosis formation is one approach to unravel the not yet fully understood genetic basis of heterosis - the improved agronomic performance of hybrid F1 plants compared to their inbred parents. The identification of candidate genes underlying a QTL is important both for ...

journal_title：BMC plant biology

authors： Thiemann A,Fu J,Seifert F,Grant-Downton RT,Schrag TA,Pospisil H,Frisch M,Melchinger AE,Scholten S

更新日期：2014-04-02 00:00:00

abstract：BACKGROUND:Brassica includes many successfully cultivated crop species of polyploid origin, either by ancestral genome triplication or by hybridization between two diploid progenitors, displaying complex repetitive sequences and transposons. The U's triangle, which consists of three diploids and three amphidiploids, is...

journal_title：BMC plant biology

authors： Jiang J,Wang Y,Zhu B,Fang T,Fang Y,Wang Y

更新日期：2015-01-27 00:00:00

abstract：BACKGROUND:Wheat grain avenin-like proteins (ALPs) belong to a recently discovered class of wheat grain storage protein. ALPs in wheat grains not only have beneficial effects on dough quality but also display antifungal activities, which is a novel observation for wheat storage proteins. Previous studies have shown tha...

journal_title：BMC plant biology

authors： Zhang Y,Hu X,Juhasz A,Islam S,Yu Z,Zhao Y,Li G,Ding W,Ma W

更新日期：2020-01-29 00:00:00

abstract：BACKGROUND:The nucleosome positioning regulates the gene expression and many other DNA-related processes in eukaryotes. Genome-wide mapping of nucleosome positions and correlation of genome-wide nucleosomal remodeling with the changes in the gene expression can help us understanding gene regulation on genome level. RE...

journal_title：BMC plant biology

authors： Singh M,Bag SK,Bhardwaj A,Ranjan A,Mantri S,Nigam D,Sharma YK,Sawant SV

更新日期：2015-01-21 00:00:00

abstract：BACKGROUND:Most studies of crop salinity tolerance are conducted under short-term stress condition within one growth stage. Understanding of the mechanisms of crop response to long-term salinity stress (LSS) is valuable for achieving the improvement of crop salinity tolerance. In the current study, we exposed allohexap...

journal_title：BMC plant biology

authors： Bhanbhro N,Xiao B,Han L,Lu H,Wang H,Yang C

更新日期：2020-05-12 00:00:00

abstract：BACKGROUND:Plant-endophyte symbioses often revolve around nitrogen metabolism, and involve varying degrees of intimacy. Although evidence for vertical inheritance of nitrogen-fixing endophytic bacteria is increasing, it is confined mostly to crop plants, and to date no such system has been reported for geophytes. METH...

journal_title：BMC plant biology

authors： Jooste M,Roets F,Midgley GF,Oberlander KC,Dreyer LL

更新日期：2019-10-23 00:00:00

abstract：BACKGROUND:Modern agriculture strives to sustainably manage fertilizer for both economic and environmental reasons. The monitoring of any nutritional (phosphorus, nitrogen, potassium) deficiency in growing plants is a challenge for precision farming technology. A study was carried out on three species of popular crops,...

journal_title：BMC plant biology

authors： Siedliska A,Baranowski P,Pastuszka-Woźniak J,Zubik M,Krzyszczak J

更新日期：2021-01-07 00:00:00

abstract：BACKGROUND:Grape production in continental climatic regions suffers from the combination of drought and cold stresses during winter. Developing a reliable system to simulate combined drought-cold stress and to determine physiological responses and regulatory mechanisms is important. Evaluating tolerance to combined str...

journal_title：BMC plant biology

authors： Su L,Dai Z,Li S,Xin H

更新日期：2015-03-11 00:00:00

abstract：BACKGROUND:CRISPR/Cas9 gene editing has become a revolutionary technique for crop improvement as it can facilitate fast and efficient genetic changes without the retention of transgene components in the final plant line. Lack of robust bioinformatics tools to facilitate the design of highly specific functional guide RN...

journal_title：BMC plant biology

authors： Cram D,Kulkarni M,Buchwaldt M,Rajagopalan N,Bhowmik P,Rozwadowski K,Parkin IAP,Sharpe AG,Kagale S

更新日期：2019-11-06 00:00:00

abstract：BACKGROUND:Wheat seeds provide a staple food and an important protein source for the world's population. Seed germination is vital to wheat growth and development and directly affects grain yield and quality. In this study, we performed the first comparative proteomic analysis of wheat embryo and endosperm during seed ...

journal_title：BMC plant biology

authors： He M,Zhu C,Dong K,Zhang T,Cheng Z,Li J,Yan Y

更新日期：2015-04-08 00:00:00

abstract：BACKGROUND:Among various pests, the brown planthopper (BPH) that damages rice is the major destructive pests. Understanding resistance mechanisms is a critical step toward effective control of BPH. This study investigates the proteomics of BPH interactions with three rice cultivars: the first resistant (PR) to BPH, the...

journal_title：BMC plant biology

authors： Zhang X,Yin F,Xiao S,Jiang C,Yu T,Chen L,Ke X,Zhong Q,Cheng Z,Li W

更新日期：2019-01-18 00:00:00

abstract：BACKGROUND:In nature, orchid plants depend completely on symbiotic fungi for their nutrition at the germination and the subsequent seedling (protocorm) stages. However, only limited quantitative methods for evaluating the orchid-fungus interactions at the protocorm stage are currently available, which greatly constrain...

journal_title：BMC plant biology

authors： Yamamoto T,Miura C,Fuji M,Nagata S,Otani Y,Yagame T,Yamato M,Kaminaka H

更新日期：2017-02-21 00:00:00

abstract：BACKGROUND:Fruit quality depends on a series of biochemical events that modify appearance, flavour and texture throughout fruit development and ripening. Cell wall polysaccharide remodelling largely contributes to the elaboration of fleshy fruit texture. Although several genes and enzymes involved in cell wall polysacc...

journal_title：BMC plant biology

authors： Dheilly E,Gall SL,Guillou MC,Renou JP,Bonnin E,Orsel M,Lahaye M

更新日期：2016-09-15 00:00:00

abstract：BACKGROUND:Abscisic acid (ABA) and sucrose act as molecular signals in response to abiotic stress. However, how their synergy regulates the source-sink relationship has rarely been studied. This study aimed to reveal the mechanism underlying the synergy between ABA and sucrose on assimilates allocation to improve grain...

journal_title：BMC plant biology

authors： Chen T,Li G,Islam MR,Fu W,Feng B,Tao L,Fu G

更新日期：2019-11-27 00:00:00

abstract：BACKGROUND:Genetic manipulation of brassinosteroid (BR) biosynthesis or signaling is a promising strategy to improve crop yield and quality. However, the relationships between the BR-promoted growth and photosynthesis and the exact mechanism of BR-regulated photosynthetic capacity are not clear. Here, we generated tran...

journal_title：BMC plant biology

authors： Li XJ,Guo X,Zhou YH,Shi K,Zhou J,Yu JQ,Xia XJ

更新日期：2016-01-28 00:00:00

abstract：BACKGROUND:The function of 4-coumarate-CoA ligases (4CL) under abiotic stresses has been studied in plants, however, limited is known about the 4CL genes in cotton (G. hirsutum L.) and their roles in response to drought stress. RESULTS:We performed genome-wide identification of the 4CL genes in G. hirsutum and investi...

journal_title：BMC plant biology

authors： Sun SC,Xiong XP,Zhang XL,Feng HJ,Zhu QH,Sun J,Li YJ

更新日期：2020-03-23 00:00:00

abstract：BACKGROUND:Global warming predictions indicate that temperatures will increase by another 2-6°C by the end of this century. High temperature is a major abiotic stress limiting plant growth and productivity in many areas of the world. Switchgrass (Panicum virgatum L.) is a model herbaceous bioenergy crop, due to its rap...

journal_title：BMC plant biology

authors： Li YF,Wang Y,Tang Y,Kakani VG,Mahalingam R

更新日期：2013-10-06 00:00:00

abstract：BACKGROUND:Manganese (Mn), an essential element for plants, can be toxic when present in excess. Stylo (Stylosanthes) is a pioneer tropical legume with great potential for Mn tolerance, but its Mn tolerance mechanisms remain poorly understood. RESULTS:In this study, variations in Mn tolerance were observed among nine ...

journal_title：BMC plant biology

authors： Liu P,Huang R,Hu X,Jia Y,Li J,Luo J,Liu Q,Luo L,Liu G,Chen Z

更新日期：2019-05-22 00:00:00

abstract：BACKGROUND:In Quercus suber, cork oak, a Mediterranean forest tree of economic and social interest, rapid production of isogenic lines and clonal propagation of elite genotypes have been achieved by developing in vitro embryogenesis from microspores and zygotic embryos respectively. Despite its high potential in tree b...

journal_title：BMC plant biology

authors： Rodríguez-Sanz H,Manzanera JA,Solís MT,Gómez-Garay A,Pintos B,Risueño MC,Testillano PS

更新日期：2014-08-21 00:00:00