Umboniibacter marinipuniceus gen. nov., sp. nov., a marine gammaproteobacterium isolated from the mollusc Umbonium costatum from the Sea of Japan.

Abstract:

:Two bacterial strains, KMM 3891(T) and KMM 3892, were isolated from internal tissues of the marine mollusc Umbonium costatum collected from the Sea of Japan. The novel isolates were Gram-negative, aerobic, faint pink-reddish-pigmented, rod-shaped, non-motile, stenohaline and psychrotolerant bacteria that were unable to degrade most tested complex polysaccharides. Polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. Fatty acid analysis revealed C(17 : 1)omega6c, C(17 : 0), C(16 : 0) and C(16 : 1)omega7c as the dominant components. The major isoprenoid quinone was Q-7. The DNA G+C content of strain KMM 3891(T) was 51.7 mol%. According to phylogenetic analysis of 16S rRNA gene sequences, strains KMM 3891(T) and KMM 3892 were positioned within the Gammaproteobacteria as a separate branch, sharing <93 % sequence similarity to their phylogenetic relatives including Saccharophagus degradans, Microbulbifer species, Endozoicomonas elysicola, Simiduia agarivorans and Teredinibacter turnerae. Based on phenotypic characterization and phylogenetic distance, the novel marine isolates KMM 3891(T) and KMM 3892 represent a new genus and species, for which the name Umboniibacter marinipuniceus gen. nov., sp. nov. is proposed. The type strain of Umboniibacter marinipuniceus is KMM 3891(T) (=NRIC 0753(T) =JCM 15738(T)).

authors

Romanenko LA,Tanaka N,Frolova GM

doi

10.1099/ijs.0.010728-0

subject

Has Abstract

pub_date

2010-03-01 00:00:00

pages

603-609

issue

Pt 3

eissn

1466-5026

issn

1466-5034

journal_volume

60

pub_type

杂志文章
  • Saccharomonospora piscinae sp. nov., a novel actinobacterium from fishpond sediment in Taiwan.

    abstract::Strain 06168H-1T was isolated from a fishpond sediment sample collected from the southern area of Taiwan, and a polyphasic approach was used to determine its taxonomic position. The isolate grew between 20-40 °C and 0-8 % (w/v) NaCl. It produced branched and unfragmented substrate mycelia. Short spore chains (3-10 spo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002653

    authors: Tseng M,Chiang WP,Liao HC,Hsieh SY,Yuan GF

    更新日期:2018-05-01 00:00:00

  • Catellibacterium aquatile sp. nov., isolated from fresh water, and emended description of the genus Catellibacterium Tanaka et al. 2004.

    abstract::A Gram-negative, rod-shaped, non-pigmented, non-spore-forming bacterial strain that was motile by a single polar flagellum, designated A1-9(T), was isolated from Daqing reservoir in north-east China and its taxonomic position was studied using a polyphasic approach. Strain A1-9(T) was non-halophilic, strictly aerobic ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017632-0

    authors: Liu Y,Xu CJ,Jiang JT,Liu YH,Song XF,Li H,Liu ZP

    更新日期:2010-09-01 00:00:00

  • Marinobacter halophilus sp. nov., a halophilic bacterium isolated from a salt lake.

    abstract::A Gram-staining-negative bacterium, strain XCD-X12(T), was isolated from Xiaochaidan Lake, a salt lake (salinity 9.9%, w/w) in Qaidam basin, Qinghai Province, China. Its taxonomic position was determined by using a polyphasic approach. Cells of strain XCD-X12(T) were non-spore-forming rods, 0.4-0.7 μm wide, 2.1-3.2 μm...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000338

    authors: Zhong ZP,Liu Y,Liu HC,Wang F,Zhou YG,Liu ZP

    更新日期:2015-09-01 00:00:00

  • Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.

    abstract::Limit-dilution procedures were used to isolate seven, helically coiled bacterial strains from faeces of swine that constituted two unidentified taxa. Comparative 16S rRNA gene sequence analysis showed highest similarity values with species of the genus Treponema indicating that the isolates are members of this genus. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63388-0

    authors: Nordhoff M,Taras D,Macha M,Tedin K,Busse HJ,Wieler LH

    更新日期:2005-07-01 00:00:00

  • Brooklawnia cerclae gen. nov., sp. nov., a propionate-forming bacterium isolated from chlorosolvent-contaminated groundwater.

    abstract::Two novel facultatively anaerobic bacterial strains, BL-34(T) and BL-35, isolated from groundwater contaminated by a mixture of chlorosolvents were characterized using a polyphasic approach. The two strains exhibited essentially identical taxonomic features except for a vitamin B(12) requirement by strain BL-35 for op...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64317-0

    authors: Bae HS,Moe WM,Yan J,Tiago I,da Costa MS,Rainey FA

    更新日期:2006-08-01 00:00:00

  • Streptomyces ciscaucasicus Sveshnikova et al. 1983 is a later subjective synonym of Streptomyces canus Heinemann et al. 1953.

    abstract::Streptomyces canuswas described in 1953 and the name was listed in the Approved List of Bacterial Names in 1980. Three years later, Streptomyces ciscaucasicus was published and the name was subsequently validated in Validation List no. 22 in 1986. On the basis of genome comparison and multilocus sequence analysis of t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002418

    authors: Kämpfer P,Rückert C,Blom J,Goesmann A,Wink J,Kalinowski J,Glaeser SP

    更新日期:2018-01-01 00:00:00

  • Streptomyces graminilatus sp. nov., isolated from bamboo litter.

    abstract::A Gram-stain-positive, novel actinobacterium, designated strain JL-6(T), was isolated from the litter of a bamboo (Sasa borealis) forest in Damyang, Korea. Strain JL-6(T) had white-grey, smooth, cylindrical spores that were borne in straight, long spore-chains. The novel strain grew aerobically at 15-28 °C (optimum, 2...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049528-0

    authors: Lee HJ,Whang KS

    更新日期:2014-02-01 00:00:00

  • Mangrovitalea sediminis gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from mangrove sediment.

    abstract::A Gram-stain-negative, facultative anaerobic and oligotrophic, rod-shaped, and motile with single polar flagellum bacterial strain, designed M11-4T was isolated from mangrove sediment in Yunxiao Mangrove National Nature Reserve, China. Growth was observed at temperatures from 10 to 40 °C (optimum 30 °C), at salinities...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002433

    authors: Liao H,Li Y,Guo X,Lin X,Lai Q,Xu H,Zheng T,Tian Y

    更新日期:2017-12-01 00:00:00

  • Brevibacterium massiliense sp. nov., isolated from a human ankle discharge.

    abstract::Gram-positive, non-spore-forming rods, strain 5401308T, were isolated from a human ankle discharge. Based on cellular morphology and the results of biochemical testing, this strain was tentatively identified as an undescribed member of the genus Brevibacterium. The major fatty acids were anteiso-C15:0 (45.3%), anteiso...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007864-0

    authors: Roux V,Raoult D

    更新日期:2009-08-01 00:00:00

  • Tagaea marina gen. nov., sp. nov., a marine bacterium isolated from shallow coastal water.

    abstract::A Gram-negative, heterotrophic, marine bacterium, designated strain TT1T, was isolated from seawater collected from the shallow coastal region of Anping Harbour, Tainan, Taiwan. Cells grown in broth cultures were straight rods that were motile by means of a single polar flagellum. The isolate required NaCl for growth ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000756

    authors: Dar Jean W,Huang SP,Chen JS,Shieh WY

    更新日期:2016-02-01 00:00:00

  • Xuhuaishuia manganoxidans gen. nov., sp. nov., a manganese-oxidizing bacterium isolated from deep-sea sediments from the Pacific Polymetallic Nodule Province.

    abstract::A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, manganese-oxidizing bacterial strain, designated DY6-4T, was isolated from the surface sediment of the Pacific Clarion-Clipperton Fracture Zone. Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain DY6-4T formed a lineage within...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000912

    authors: Wang L,Liu Y,Shi X,Wang Y,Zheng Y,Dai X,Zhang XH

    更新日期:2016-03-01 00:00:00

  • Cecembia calidifontis sp. nov., isolated from a hot spring runoff, and emended description of the genus Cecembia.

    abstract::Two red-pigmented isolates, designated RQ-33(T) and TU-13, were recovered from hot spring runoffs on the Island of São Miguel in the Azores, Portugal. These organisms have an optimum growth temperature of approximately 45 °C and an optimum pH for growth between 7.5 and 8.5. Based on 16S rRNA gene sequence analysis, th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044537-0

    authors: Albuquerque L,Tiago I,Nobre MF,Veríssimo A,da Costa MS

    更新日期:2013-04-01 00:00:00

  • Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent.

    abstract::A Gram-negative-staining, short-rod-shaped, floc-forming bacterium, designated strain RB3-7(T), was isolated from a laboratory-scale activated sludge system treating coke plant effluent. Comparative analysis of the 16S rRNA gene sequence demonstrated that the novel isolate was distantly related (≤ 95.8 % similarity) t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.020818-0

    authors: Felföldi T,Kéki Z,Sipos R,Márialigeti K,Tindall BJ,Schumann P,Tóth EM

    更新日期:2011-09-01 00:00:00

  • Pseudomonas sabulinigri sp. nov., isolated from black beach sand.

    abstract::A novel Gram-negative, aerobic, motile, short rod-shaped bacterium, designated J64T, was isolated from black sand collected from Soesoggak, Jeju Island, Korea. Cells grew at 4-37 degrees C, at pH 5.5-10.0 and with 0-10 % NaCl. The strain was found to be oxidase- and catalase-positive. Phylogenetic analyses showed that...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65866-0

    authors: Kim KH,Roh SW,Chang HW,Nam YD,Yoon JH,Jeon CO,Oh HM,Bae JW

    更新日期:2009-01-01 00:00:00

  • Change of the names Haloanaerobiales, Haloanaerobiaceae and Haloanaerobium to Halanaerobiales, Halanaerobiaceae and Halanaerobium, respectively, and further nomenclatural changes within the order Halanaerobiales.

    abstract::A formal proposal is made to rename the order Haloanaerobiales as Halanaerobiales, the family Haloanaerobiaceae as Halanaerobiaceae, the genera Haloanaerobium and Haloanaerobacter as Halanaerobium and Halanaerobacter, respectively, and to change the specific epithets of Halanaerobium acetoethylicum, Halanaerobacter la...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-6-2229

    authors: Oren A

    更新日期:2000-11-01 00:00:00

  • Halioglobus sediminis sp. nov., isolated from coastal sediment.

    abstract::A novel aerobic, Gram-stain-negative, non-motile and rod-shaped bacterium, designated strain U0301T, was isolated from a marine sediment sample in Weihai, China. This strain grew optimally at 33 °C, pH 7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. Strain U0301T shared pairwise 16S rRNA gene sequence similarities of...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003366

    authors: Han JR,Ye MQ,Wang C,Du ZJ

    更新日期:2019-06-01 00:00:00

  • Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater.

    abstract::Strain GI5T was isolated from a surface seawater sample collected from Garorim Bay (West Sea, Republic of Korea). The isolated strain was aerobic, Gram-stain-negative, rod-shaped, motile by means of a polar flagellum, negative for catalase and weakly positive for oxidase. The optimum growth pH, salinity and temperatur...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002823

    authors: Kim SH,Kim JG,Jung MY,Kim SJ,Gwak JH,Yu WJ,Roh SW,Kim YH,Rhee SK

    更新日期:2018-07-01 00:00:00

  • Compostimonas suwonensis gen. nov., sp. nov., isolated from spent mushroom compost.

    abstract::A Gram-positive, aerobic, non-motile, short rod, designated SMC46(T), was isolated from a spent mushroom compost sample collected in the Suwon region, South Korea. 16S rRNA gene sequence analysis revealed that strain SMC46(T) was a member of the family Microbacteriaceae; however, the isolate formed a branch separate f...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.036343-0

    authors: Kim SJ,Tamura T,Hamada M,Ahn JH,Weon HY,Park IC,Suzuki KI,Kwon SW

    更新日期:2012-10-01 00:00:00

  • Vitellibacter nionensis sp. nov., isolated from a shallow water hydrothermal vent.

    abstract::A novel, Gram-stain-negative, non-motile, rod-shaped yellow bacterium, designated VBW088(T) was isolated from a shallow water hydrothermal vent in Espalamaca in the Azores. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain VBW088(T) clustered with three type strains of species of the genus Vite...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.070805-0

    authors: Rajasabapathy R,Mohandass C,Yoon JH,Dastager SG,Liu Q,Khieu TN,Son CK,Li WJ,Colaço A

    更新日期:2015-02-01 00:00:00

  • Micromonospora sediminicola sp. nov., isolated from marine sediment.

    abstract::An actinomycete strain, designated strain SH2-13(T), was isolated from a marine sediment sample collected from the Andaman Sea of Thailand. Applying a polyphasic approach, the isolate was identified as a member of the genus Micromonospora using morphological and chemotaxonomic characteristics, including the presence o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.041103-0

    authors: Supong K,Suriyachadkun C,Tanasupawat S,Suwanborirux K,Pittayakhajonwut P,Kudo T,Thawai C

    更新日期:2013-02-01 00:00:00

  • Haloactinomyces albus gen. nov., sp. nov., isolated from the Dead Sea.

    abstract::A novel halophilic, filamentous actinomycete strain, designated AFM 10258T, was isolated from a sediment sample collected from the Dead Sea of Israel. The isolate grew with 10-35 % NaCl and did not grow without NaCl. The isolate formed white aerial mycelium and long spore chains, and two spores were separated by steri...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001783

    authors: Lai H,Jiang Y,Chen X,Li Q,Jiang C,Jiang Y,Wei X

    更新日期:2017-05-01 00:00:00

  • Bacillus aurantiacus sp. nov., an alkaliphilic and moderately halophilic bacterium isolated from Hungarian soda lakes.

    abstract::Three alkaliphilic and moderately halophilic strains designated K1-5T, K1-10 and B1-1, characterized by optimal growth at pH 9.0-10.0 and at 3-7 % (w/v) NaCl, were isolated from extremely shallow, alkaline soda lakes located in Hungary. Cells of the strains are Gram-positive, straight rods and form a central to subter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65325-0

    authors: Borsodi AK,Márialigeti K,Szabó G,Palatinszky M,Pollák B,Kéki Z,Kovács AL,Schumann P,Tóth EM

    更新日期:2008-04-01 00:00:00

  • Kuraishia mediterranea sp. nov., a methanol-assimilating yeast species from olive oil and its sediment.

    abstract::Six yeast strains isolated from olive oil sediments and spoiled olive oils originating from Slovenia and Portugal, respectively, proved to represent an undescribed yeast species based on DNA sequence comparisons. The analysis of gene sequences for internal transcribed spacer regions and the large subunit rRNA gene D1/...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002392

    authors: Čadež N,Dlauchy D,Tóbiás A,Péter G

    更新日期:2017-11-01 00:00:00

  • Helicobacter cynogastricus sp. nov., isolated from the canine gastric mucosa.

    abstract::A Gram-negative, microaerophilic helical rod, isolated from the gastric mucosa of a dog and designated strain JKM4(T), was subjected to a polyphasic taxonomic study. The tightly coiled organism, measuring 10-18 mum long and up to 1 mum wide, was motile by means of multiple sheathed flagella located at both ends of the...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63860-0

    authors: Van den Bulck K,Decostere A,Baele M,Vandamme P,Mast J,Ducatelle R,Haesebrouck F

    更新日期:2006-07-01 00:00:00

  • Actibacterium ureilyticum sp. nov., isolated from seawater.

    abstract::A polyphasic approach was used to characterize a novel marine bacterial strain, designated LS-811T, isolated from seawater of the South China Sea (Taiwan). Cells of strain LS-811Twere Gram-staining negative, aerobic and rod-shaped with polar flagella. The 16S rRNA gene sequence analysis of strain LS-811T showed highes...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001052

    authors: Lin SY,Young CC,Hameed A,Liu YC,Hsu YH,Chung WC,Young LS

    更新日期:2016-08-01 00:00:00

  • Pueribacillus theae gen. nov., sp. nov., isolated from Pu'er tea.

    abstract::A novel bacterial strain, designated T8T, isolated from ripened Pu'er tea, was investigated by using a polyphasic taxonomic approach. Cells stained Gram-positive and were aerobic, sporogenous and rod-shaped with flagella. Phylogenetic analysis of 16S rRNA gene sequences revealed the strain belonged to the family Bacil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002913

    authors: Wang D,Xiang Y,Jiang C,Zhang J,Hua Z,Niu L,Luo L

    更新日期:2018-09-01 00:00:00

  • Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage.

    abstract::A heterotrophic and acidophilic bacterial strain, G45-3T, was isolated from acidic mine drainage sampled in Fujian Province, PR China. Cells of strain G45-3T were Gram-stain-negative, non-spore-forming, non-motile and rod-shaped. Catalase and oxidase activities were positive. Strain G45-3T grew aerobically at 20-45 °C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003618

    authors: Muhadesi JB,Huang Y,Wang BJ,Jiang CY,Liu SJ

    更新日期:2019-10-01 00:00:00

  • Reclassification and emended description of Caulobacter leidyi as Sphingomonas leidyi comb. nov., and emendation of the genus Sphingomonas.

    abstract::'Caulobacter leidyi' DSM 4733(T) has been shown to be affiliated with the family Sphingomonadaceae instead of the Caulobacteraceae, and due to its poor characterization has been omitted from the current edition of Bergey's Manual of Systematic Bacteriology and removed to limbo. We isolated a novel sphingoglycolipid-co...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.039636-0

    authors: Chen H,Jogler M,Rohde M,Klenk HP,Busse HJ,Tindall BJ,Spröer C,Overmann J

    更新日期:2012-12-01 00:00:00

  • Orbus sasakiae sp. nov., a bacterium isolated from the gut of the butterfly Sasakia charonda, and emended description of the genus Orbus.

    abstract::A novel Gram-stain-negative, facultatively anaerobic, non-motile and coccus-shaped bacterium, strain C7(T), was isolated from the gut of the butterfly Sasakia charonda. Strain C7(T) grew optimally at 20-25 °C, at pH 7-8 and with 1 % (w/v) NaCl. The strain was negative for oxidase activity but positive for catalase act...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.041871-0

    authors: Kim JY,Lee J,Shin NR,Yun JH,Whon TW,Kim MS,Jung MJ,Roh SW,Hyun DW,Bae JW

    更新日期:2013-05-01 00:00:00

  • Mrakia stelviica sp. nov. and Mrakia montana sp. nov., two novel basidiomycetous yeast species isolated from cold environments.

    abstract::Five yeast strains were isolated from soil and sediments collected from Alps and Apennines glaciers during sampling campaigns carried out in summer 2007 and 2017, respectively. Based on morphological and physiological tests and on phylogenetic analyses reconstructed with ITS and D1/D2 sequences, the five strains were ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004336

    authors: Turchetti B,Sannino C,Mezzasoma A,Zucconi L,Onofri S,Buzzini P

    更新日期:2020-08-01 00:00:00