A semi-parametric approach to estimate the family-wise error rate in fMRI using resting-state data.

Abstract:

:One of the most important considerations in any hypothesis based fMRI data analysis is to choose the appropriate threshold to construct the activation maps, which is usually based on p-values. However, in fMRI data, there are three factors which necessitate severe corrections in the process of estimating the p-values. First, the fMRI time series at an individual voxel has strong temporal autocorrelation which needs to be estimated to obtain the corrected parametric p-value. The second factor is the multiple comparisons problem arising from simultaneously testing tens of thousands of voxels for activation. A common way in the statistical literature to account for multiple testing is to consider the family-wise error rate (FWE) which is related to the distribution of the maximum observed value over all voxels. The third problem, which is not mentioned frequently in the context of adjusting the p-value, is the effect of inherent low frequency processes present even in resting-state data that may introduce a large number of false positives without proper adjustment. In this article, a novel and efficient semi-parametric method, using resampling of normalized spacings of order statistics, is introduced to address all the three problems mentioned above. The new method makes very few assumptions and demands minimal computational effort, unlike other existing resampling methods in fMRI. Furthermore, it will be demonstrated that the correction for temporal autocorrelation is not critical in implementing the proposed method. Results using the proposed method are compared with SPM2.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Nandy R,Cordes D

doi

10.1016/j.neuroimage.2006.10.025

subject

Has Abstract

pub_date

2007-02-15 00:00:00

pages

1562-76

issue

4

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(06)01022-6

journal_volume

34

pub_type

杂志文章
  • Detection of functional connectivity in the resting mouse brain.

    abstract::Resting-state functional connectivity, manifested as spontaneous synchronous activity in the brain, has been detected by functional MRI (fMRI) across species such as humans, monkeys, and rats. Yet, most networks, especially the classical bilateral connectivity between hemispheres, have not been reliably found in the m...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.10.025

    authors: Nasrallah FA,Tay HC,Chuang KH

    更新日期:2014-02-01 00:00:00

  • Effects of magnetization transfer on T1 contrast in human brain white matter.

    abstract::MRI based on T1 relaxation contrast is increasingly being used to study brain morphology and myelination. Although it provides for excellent distinction between the major tissue types of gray matter, white matter, and CSF, reproducible quantification of T1 relaxation rates is difficult due to the complexity of the con...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.12.032

    authors: van Gelderen P,Jiang X,Duyn JH

    更新日期:2016-03-01 00:00:00

  • Default mode network connectivity of fear- and anxiety-related cue and context conditioning.

    abstract::Classical fear conditioning is an important mechanism to adequately respond and adapt to environmental threats and has been related to the development of fear and anxiety. Both cue and context conditioning have been studied but little is known about their relation to relevant resting state networks. The default mode n...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.10.024

    authors: Zidda F,Andoh J,Pohlack S,Winkelmann T,Dinu-Biringer R,Cavalli J,Ruttorf M,Nees F,Flor H

    更新日期:2018-01-15 00:00:00

  • Correction of gradient echo images for first and second order macroscopic signal dephasing using phase derivative mapping.

    abstract::Gradient echo techniques are often hampered by signal dephasing due to macroscopic phase perturbations because of system imperfections (shimming) or object induced perturbations of the magnetic field (hemorrhagic lesions, calcified tissue, air-tissue interfaces). Many techniques have been proposed to reduce the effect...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.11.083

    authors: de Leeuw H,Bakker CJ

    更新日期:2012-03-01 00:00:00

  • MRI correlates of pathology in parkinsonism: segmented inversion recovery ratio imaging (SIRRIM).

    abstract::The two commonest, clinically well-defined, forms of parkinsonism are idiopathic Parkinson's disease (PD) and progressive supranuclear palsy (PSP). Both involve, inter alia, pathological changes in the substantia nigra pars compacta (SN(C)). In PD there is neuronal loss with associated Lewy body pathology and microgli...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.07.012

    authors: Hutchinson M,Raff U,Lebedev S

    更新日期:2003-11-01 00:00:00

  • Single-trial EEG dynamics of object and face visual processing.

    abstract::There has been extensive work using early event-related potentials (ERPs) to study visual object processing. ERP analyses focus traditionally on mean amplitude differences, with the implicit assumption that all of the neuronal activity of interest is evoked by the stimulus in a time-locked manner from trial to trial. ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.02.052

    authors: Rousselet GA,Husk JS,Bennett PJ,Sekuler AB

    更新日期:2007-07-01 00:00:00

  • Integrating functional near-infrared spectroscopy in the characterization, assessment, and monitoring of cancer and treatment-related neurocognitive dysfunction.

    abstract::Cancer and cancer treatment-related neurocognitive dysfunction (CRND) (e.g., impairments in key cognitive domains of attention, memory, processing speed, and executive function), commonly referred to as "chemobrain" or "chemo-fog", can negatively impact patients' psychosocial functioning and quality of life. CRND is a...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2013.06.075

    authors: Jean-Pierre P

    更新日期:2014-01-15 00:00:00

  • On the need for bundle-specific microstructure kernels in diffusion MRI.

    abstract::Probing microstructure with diffusion magnetic resonance imaging (dMRI) on a scale orders of magnitude below the imaging resolution relies on biophysical modelling of the signal response in the tissue. The vast majority of these biophysical models of diffusion in white matter assume that the measured dMRI signal is th...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116460

    authors: Christiaens D,Veraart J,Cordero-Grande L,Price AN,Hutter J,Hajnal JV,Tournier JD

    更新日期:2020-03-01 00:00:00

  • Event-related fMRI of the auditory cortex.

    abstract::An event-related protocol was designed to permit auditory fMRI studies minimally affected by the echo-planar noise artifact; a long time interval (TR = 10 s) between each cerebral volume acquisition was combined with stroboscopic data acquisition, and event-related curves were reconstructed with a 1-s resolution. The ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.1999.0480

    authors: Belin P,Zatorre RJ,Hoge R,Evans AC,Pike B

    更新日期:1999-10-01 00:00:00

  • Deep brain stimulation in the caudal zona incerta modulates the sensorimotor cerebello-cerebral circuit in essential tremor.

    abstract::Essential tremor is effectively treated with deep brain stimulation (DBS), but the neural mechanisms underlying the treatment effect are poorly understood. Essential tremor is driven by a dysfunctional cerebello-thalamo-cerebral circuit resulting in pathological tremor oscillations. DBS is hypothesised to interfere wi...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116511

    authors: Awad A,Blomstedt P,Westling G,Eriksson J

    更新日期:2020-04-01 00:00:00

  • Forgiveness and cognitive control - Provoking revenge via theta-burst-stimulation of the DLPFC.

    abstract::In order to act in a socially acceptable way, the ability to forgive is indispensable. It has been suggested that forgiveness relies on cognitive control, more specifically inhibition. In this study, we combined an ultimatum game (UG) and a dictator game (DG) with inhibitory, continuous theta-burst stimulation (cTBS; ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.08.065

    authors: Maier MJ,Rosenbaum D,Haeussinger FB,Brüne M,Enzi B,Plewnia C,Fallgatter AJ,Ehlis AC

    更新日期:2018-12-01 00:00:00

  • Quantitative analysis of the hippocampus using images obtained from 7.0 T MRI.

    abstract::In-vivo volumetric measurements of hippocampus have proven to be highly informative for studying various neurological diseases such as Alzheimer's disease. The usefulness of volumetric imaging, however, has been limited due to the poor image resolutions obtained by currently available MRI images. In this study, a new ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.11.002

    authors: Cho ZH,Han JY,Hwang SI,Kim DS,Kim KN,Kim NB,Kim SJ,Chi JG,Park CW,Kim YB

    更新日期:2010-02-01 00:00:00

  • Predictive perception of self-generated movements: Commonalities and differences in the neural processing of tool and hand actions.

    abstract::Tool use is one of the most remarkable skills of the human species, enabling complex interactions with the environment. To establish such interactions, we predict the sensory consequences of our actions based on a copy of the motor command (efference copy), leading to an attenuated perception and neural suppression of...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116309

    authors: Pazen M,Uhlmann L,van Kemenade BM,Steinsträter O,Straube B,Kircher T

    更新日期:2020-02-01 00:00:00

  • Multi-spectral oscillatory dynamics serving directed and divided attention.

    abstract::Attention-related amplification of neural representations of external stimuli has been well documented in the visual domain, however, research concerning the oscillatory dynamics of such directed attention is relatively sparse in humans. Specifically, it is unknown which spectrally-specific neural responses are mainly...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116927

    authors: McCusker MC,Wiesman AI,Schantell MD,Eastman JA,Wilson TW

    更新日期:2020-08-15 00:00:00

  • Advanced MRI techniques to improve our understanding of experience-induced neuroplasticity.

    abstract::Over the last two decades, numerous human MRI studies of neuroplasticity have shown compelling evidence for extensive and rapid experience-induced brain plasticity in vivo. To date, most of these studies have consisted of simply detecting a difference in structural or functional images with little concern for their la...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2015.08.047

    authors: Tardif CL,Gauthier CJ,Steele CJ,Bazin PL,Schäfer A,Schaefer A,Turner R,Villringer A

    更新日期:2016-05-01 00:00:00

  • Attractor concretion as a mechanism for the formation of context representations.

    abstract::Complex tasks often require the memory of recent events, the knowledge about the context in which they occur, and the goals we intend to reach. All this information is stored in our mental states. Given a set of mental states, reinforcement learning (RL) algorithms predict the optimal policy that maximizes future rewa...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.01.047

    authors: Rigotti M,Ben Dayan Rubin D,Morrison SE,Salzman CD,Fusi S

    更新日期:2010-09-01 00:00:00

  • A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability.

    abstract::There has been growing interest in the role of postnatal brain development in the etiology of several neurologic diseases. The rat has long been recognized as a powerful model system for studying neuropathology and the safety of pharmacologic treatments. However, the complex spatiotemporal changes that occur during ra...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.01.017

    authors: Calabrese E,Badea A,Watson C,Johnson GA

    更新日期:2013-05-01 00:00:00

  • Individual differences in analogical reasoning revealed by multivariate task-based functional brain imaging.

    abstract::Although analogical reasoning (AR) plays a central role in higher-level cognition and constitutes a key source of individual differences in intellectual ability, the neural mechanisms that account for individual differences in AR remain to be well characterized. Here we investigated individual differences in AR within...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.09.011

    authors: Hammer R,Paul EJ,Hillman CH,Kramer AF,Cohen NJ,Barbey AK

    更新日期:2019-01-01 00:00:00

  • The parietal role in the sense of self-ownership with temporal discrepancy between visual and proprioceptive feedbacks.

    abstract::One hypothesis on how we recognize an image of, for example, an arm as our own is through the co-occurrence of multiple sensory feedbacks, especially visual and proprioceptive feedbacks, in this process. It has been suggested that the parietal lobe is the region where proprioceptive and visual information of one's own...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2004.10.039

    authors: Shimada S,Hiraki K,Oda I

    更新日期:2005-02-15 00:00:00

  • Brain function and personality in normal males: a SPECT study using statistical parametric mapping.

    abstract::Understanding the differences between individuals' personality types at a functional brain level is now possible due to recent developments in both functional brain imaging and personality models. The psychobiological model for temperament and character offers one approach to exploring personality. This study uses SPE...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/s1053-8119(03)00171-x

    authors: Turner RM,Hudson IL,Butler PH,Joyce PR

    更新日期:2003-07-01 00:00:00

  • A direct test for lateralization of language activation using fMRI: comparison with invasive assessments in children with epilepsy.

    abstract::This study introduces a direct method of assessing cerebral lateralization for language based on fMRI activation. The method, derived from a voxel-based morphometry study by C. H. Salmond et al. (2000, Hum. Brain Mapping 11, 223-232), bases lateralization on the direct statistical comparison of the magnitude of task-i...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1327

    authors: Liégeois F,Connelly A,Salmond CH,Gadian DG,Vargha-Khadem F,Baldeweg T

    更新日期:2002-12-01 00:00:00

  • Cytoarchitectural differences are a key determinant of laminar projection origins in the visual cortex.

    abstract::Regularity of laminar origin and termination of projections appears to be a common feature of corticocortical connections. We tested three models of this regularity, originally formulated for primate cerebral cortex, using quantitative data on the relative supragranular layer origins (SGN%) of 151 projections from 19 ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.03.006

    authors: Hilgetag CC,Grant S

    更新日期:2010-07-01 00:00:00

  • Brain templates and atlases.

    abstract::The core concept within the field of brain mapping is the use of a standardized, or "stereotaxic", 3D coordinate frame for data analysis and reporting of findings from neuroimaging experiments. This simple construct allows brain researchers to combine data from many subjects such that group-averaged signals, be they s...

    journal_title:NeuroImage

    pub_type: 历史文章,杂志文章,评审

    doi:10.1016/j.neuroimage.2012.01.024

    authors: Evans AC,Janke AL,Collins DL,Baillet S

    更新日期:2012-08-15 00:00:00

  • A special role for numbers in working memory? An fMRI study.

    abstract::Although numbers carry averbal semantics (i.e., magnitude), they are often utilized in verbal Working Memory (vWM) tasks. However, vWM is thought to rely on a purely phonological code. Here, we tested the influence of (a) averbal semantics and (b) different tasks on performance in a vWM context by examining stimulus a...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2005.07.009

    authors: Knops A,Nuerk HC,Fimm B,Vohn R,Willmes K

    更新日期:2006-01-01 00:00:00

  • Behavioral interventions for reducing head motion during MRI scans in children.

    abstract::A major limitation to structural and functional MRI (fMRI) scans is their susceptibility to head motion artifacts. Even submillimeter movements can systematically distort functional connectivity, morphometric, and diffusion imaging results. In patient care, sedation is often used to minimize head motion, but it incurs...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.01.023

    authors: Greene DJ,Koller JM,Hampton JM,Wesevich V,Van AN,Nguyen AL,Hoyt CR,McIntyre L,Earl EA,Klein RL,Shimony JS,Petersen SE,Schlaggar BL,Fair DA,Dosenbach NUF

    更新日期:2018-05-01 00:00:00

  • Diffusion time dependency along the human corpus callosum and exploration of age and sex differences as assessed by oscillating gradient spin-echo diffusion tensor imaging.

    abstract::Conventional diffusion imaging uses pulsed gradient spin echo (PGSE) waveforms with diffusion times of tens of milliseconds (ms) to infer differences of white matter microstructure. The combined use of these long diffusion times with short diffusion times (<10 ​ms) enabled by oscillating gradient spin echo (OGSE) wave...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116533

    authors: Tétreault P,Harkins KD,Baron CA,Stobbe R,Does MD,Beaulieu C

    更新日期:2020-04-15 00:00:00

  • Regional white matter volume differences in nondemented aging and Alzheimer's disease.

    abstract::Accumulating evidence suggests that altered cerebral white matter (WM) influences normal aging, and further that WM degeneration may modulate the clinical expression of Alzheimer's disease (AD). Here we conducted a study of differences in WM volume across the adult age span and in AD employing a newly developed, autom...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.10.030

    authors: Salat DH,Greve DN,Pacheco JL,Quinn BT,Helmer KG,Buckner RL,Fischl B

    更新日期:2009-02-15 00:00:00

  • Differential contributions of the globus pallidus and ventral thalamus to stimulus-response learning in humans.

    abstract::The ability to learn associations between stimuli, responses and rewards is a prerequisite for survival. Models of reinforcement learning suggest that the striatum, a basal ganglia input nucleus, vitally contributes to these learning processes. Our recently presented computational model predicts, first, that not only ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.07.061

    authors: Schroll H,Horn A,Gröschel C,Brücke C,Lütjens G,Schneider GH,Krauss JK,Kühn AA,Hamker FH

    更新日期:2015-11-15 00:00:00

  • Cognitive versus automatic mechanisms of mood induction differentially activate left and right amygdala.

    abstract::The amygdala plays a key role in emotional processing. The specific contribution of the amygdala during the experience of one's own emotion, however, remains controversial and requires clarification. There is a long-standing debate on hemispheric lateralization of emotional processes, yet few studies to date directly ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.10.013

    authors: Dyck M,Loughead J,Kellermann T,Boers F,Gur RC,Mathiak K

    更新日期:2011-02-01 00:00:00

  • Tracking cortical activity from M/EEG using graph cuts with spatiotemporal constraints.

    abstract::This work proposes to use magnetoencephalography (MEG) and electroencephalography (EEG) source imaging to provide cinematic representations of the temporal dynamics of cortical activations. Cortical activation maps, seen as images of the active brain, are scalar maps defined at the vertices of a triangulated cortical ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.09.087

    authors: Gramfort A,Papadopoulo T,Baillet S,Clerc M

    更新日期:2011-02-01 00:00:00