A framework for modeling health behavior protocols and their linkage to behavioral theory.

Abstract:

:With the rise in chronic, behavior-related disease, computerized behavioral protocols (CBPs) that help individuals improve behaviors have the potential to play an increasing role in the future health of society. To be effective and widely used CBPs should be based on accepted behavioral theory. However, designing CBPs while at the same time specifying their linkages to behavioral theory and developing reusable CBP components (interventions) are challenges to developers of CBPs. Having an ontology with which to describe CBPs could help with these issues. As a first step towards creating such an ontology, we modeled PACE-Adolescent, a theory-based behavioral protocol that uses the Stages of Change Model and Social Cognitive Theory, using PROTEGE-2000, an ontology editor and knowledge acquisition system. We created a three-part knowledge model. Two sub-ontologies described behavioral interventions and psychological theories. The third component, implemented using Guideline Interchange Format (GLIF3), provided a way to describe the structure of a protocol and to link intervention resources and groups of actions to elements of psychological theory. Using this framework, we formally described the PACE-Adolescent protocol. Creating knowledge models such as this may lead to improvements in the design and evaluation of computerized health behavior protocols.

journal_name

J Biomed Inform

authors

Lenert L,Norman GJ,Mailhot M,Patrick K

doi

10.1016/j.jbi.2004.12.001

keywords:

subject

Has Abstract

pub_date

2005-08-01 00:00:00

pages

270-80

issue

4

eissn

1532-0464

issn

1532-0480

pii

S1532-0464(04)00168-6

journal_volume

38

pub_type

临床试验,杂志文章
  • Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project.

    abstract::The Strategic Health IT Advanced Research Projects (SHARP) Program, established by the Office of the National Coordinator for Health Information Technology in 2010 supports research findings that remove barriers for increased adoption of health IT. The improvements envisioned by the SHARP Area 4 Consortium (SHARPn) wi...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2012.01.009

    authors: Rea S,Pathak J,Savova G,Oniki TA,Westberg L,Beebe CE,Tao C,Parker CG,Haug PJ,Huff SM,Chute CG

    更新日期:2012-08-01 00:00:00

  • Patient empowerment for cancer patients through a novel ICT infrastructure.

    abstract::As a result of recent advances in cancer research and "precision medicine" approaches, i.e. the idea of treating each patient with the right drug at the right time, more and more cancer patients are being cured, or might have to cope with a life with cancer. For many people, cancer survival today means living with a c...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2019.103342

    authors: Kondylakis H,Bucur A,Crico C,Dong F,Graf N,Hoffman S,Koumakis L,Manenti A,Marias K,Mazzocco K,Pravettoni G,Renzi C,Schera F,Triberti S,Tsiknakis M,Kiefer S

    更新日期:2020-01-01 00:00:00

  • Predicting severe clinical events by learning about life-saving actions and outcomes using distant supervision.

    abstract::Medical error is a leading cause of patient death in the United States. Among the different types of medical errors, harm to patients caused by doctors missing early signs of deterioration is especially challenging to address due to the heterogeneity of patients' physiological patterns. In this study, we implemented r...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2020.103425

    authors: Lee DH,Yetisgen M,Vanderwende L,Horvitz E

    更新日期:2020-07-01 00:00:00

  • Spectral-dynamic representation of DNA sequences.

    abstract::A graphical representation of DNA sequences in which the distribution of a particular base B=A,C,G,T is represented by a set of discrete lines has been formulated. The methodology of this approach has been borrowed from two areas of physics: spectroscopy and dynamics. Consequently, the set of discrete lines is referre...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2017.06.001

    authors: Bielińska-Wąż D,Wąż P

    更新日期:2017-08-01 00:00:00

  • Unsupervised ensemble ranking of terms in electronic health record notes based on their importance to patients.

    abstract:BACKGROUND:Allowing patients to access their own electronic health record (EHR) notes through online patient portals has the potential to improve patient-centered care. However, EHR notes contain abundant medical jargon that can be difficult for patients to comprehend. One way to help patients is to reduce information ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2017.02.016

    authors: Chen J,Yu H

    更新日期:2017-04-01 00:00:00

  • Developing, implementing, and evaluating decision support systems for shared decision making in patient care: a conceptual model and case illustration.

    abstract::The importance of including patient preferences in decisions regarding their care has received increased emphasis over recent years. Medical informatics can play an important role in improving patient-centered care by developing decision support systems to support the inclusion of patient preferences in clinical decis...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/s1532-0464(03)00037-6

    authors: Ruland CM,Bakken S

    更新日期:2002-10-01 00:00:00

  • Mapping high-dimensional data onto a relative distance plane--an exact method for visualizing and characterizing high-dimensional patterns.

    abstract::We introduce a distance (similarity)-based mapping for the visualization of high-dimensional patterns and their relative relationships. The mapping preserves exactly the original distances between points with respect to any two reference patterns in a special two-dimensional coordinate system, the relative distance pl...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2004.07.005

    authors: Somorjai RL,Dolenko B,Demko A,Mandelzweig M,Nikulin AE,Baumgartner R,Pizzi NJ

    更新日期:2004-10-01 00:00:00

  • Software tools for simultaneous data visualization and T cell epitopes and disorder prediction in proteins.

    abstract::We have developed EpDis and MassPred, extendable open source software tools that support bioinformatic research and enable parallel use of different methods for the prediction of T cell epitopes, disorder and disordered binding regions and hydropathy calculation. These tools offer a semi-automated installation of chos...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2016.01.016

    authors: Jandrlić DR,Lazić GM,Mitić NS,Pavlović MD

    更新日期:2016-04-01 00:00:00

  • Evaluating performance of early warning indices to predict physiological instabilities.

    abstract::Patient monitoring algorithms that analyze multiple features from physiological signals can produce an index that serves as a predictive or prognostic measure for a specific critical health event or physiological instability. Classical detection metrics such as sensitivity and positive predictive value are often used ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2017.09.008

    authors: Scully CG,Daluwatte C

    更新日期:2017-11-01 00:00:00

  • Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use.

    abstract::Many interventions to improve the success of information technology (IT) implementations are grounded in behavioral science, using theories, and models to identify conditions and determinants of successful use. However, each model in the IT literature has evolved to address specific theoretical problems of particular ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jbi.2003.09.002

    authors: Kukafka R,Johnson SB,Linfante A,Allegrante JP

    更新日期:2003-06-01 00:00:00

  • Extending the Fellegi-Sunter probabilistic record linkage method for approximate field comparators.

    abstract::Probabilistic record linkage is a method commonly used to determine whether demographic records refer to the same person. The Fellegi-Sunter method is a probabilistic approach that uses field weights based on log likelihood ratios to determine record similarity. This paper introduces an extension of the Fellegi-Sunter...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2009.08.004

    authors: DuVall SL,Kerber RA,Thomas A

    更新日期:2010-02-01 00:00:00

  • Lexical patterns, features and knowledge resources for coreference resolution in clinical notes.

    abstract::Generation of entity coreference chains provides a means to extract linked narrative events from clinical notes, but despite being a well-researched topic in natural language processing, general-purpose coreference tools perform poorly on clinical texts. This paper presents a knowledge-centric and pattern-based approa...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2012.02.012

    authors: Gooch P,Roudsari A

    更新日期:2012-10-01 00:00:00

  • DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx.

    abstract::In Electronic Health Records (EHRs), much of valuable information regarding patients' conditions is embedded in free text format. Natural language processing (NLP) techniques have been developed to extract clinical information from free text. One challenge faced in clinical NLP is that the meaning of clinical entities...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2015.02.010

    authors: Mehrabi S,Krishnan A,Sohn S,Roch AM,Schmidt H,Kesterson J,Beesley C,Dexter P,Max Schmidt C,Liu H,Palakal M

    更新日期:2015-04-01 00:00:00

  • Temporal phenotyping of medically complex children via PARAFAC2 tensor factorization.

    abstract:OBJECTIVE:Our aim is to extract clinically-meaningful phenotypes from longitudinal electronic health records (EHRs) of medically-complex children. This is a fragile set of patients consuming a disproportionate amount of pediatric care resources but who often end up with sub-optimal clinical outcome. The rise in availab...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2019.103125

    authors: Perros I,Papalexakis EE,Vuduc R,Searles E,Sun J

    更新日期:2019-05-01 00:00:00

  • Emerging medical informatics with case-based reasoning for aiding clinical decision in multi-agent system.

    abstract::This research aims to depict the methodological steps and tools about the combined operation of case-based reasoning (CBR) and multi-agent system (MAS) to expose the ontological application in the field of clinical decision support. The multi-agent architecture works for the consideration of the whole cycle of clinica...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2015.06.012

    authors: Shen Y,Colloc J,Jacquet-Andrieu A,Lei K

    更新日期:2015-08-01 00:00:00

  • Desiderata for domain reference ontologies in biomedicine.

    abstract::Domain reference ontologies represent knowledge about a particular part of the world in a way that is independent from specific objectives, through a theory of the domain. An example of reference ontology in biomedical informatics is the Foundational Model of Anatomy (FMA), an ontology of anatomy that covers the entir...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2005.09.002

    authors: Burgun A

    更新日期:2006-06-01 00:00:00

  • Chester: towards a personal medication advisor.

    abstract::Dialogue systems for health communication hold out the promise of providing intelligent assistance to patients through natural interfaces that require no training to use. But in order to make the development of such systems cost effective, we must be able to use generic techniques and components which are then special...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2006.02.004

    authors: Allen J,Ferguson G,Blaylock N,Byron D,Chambers N,Dzikovska M,Galescu L,Swift M

    更新日期:2006-10-01 00:00:00

  • Leveraging concept-based approaches to identify potential phyto-therapies.

    abstract::The potential of plant-based remedies has been documented in both traditional and contemporary biomedical literature. Such types of text sources may thus be sources from which one might identify potential plant-based therapies ("phyto-therapies"). Concept-based analytic approaches have been shown to uncover knowledge ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2013.04.008

    authors: Sharma V,Sarkar IN

    更新日期:2013-08-01 00:00:00

  • A comparison of two methods for retrieving ICD-9-CM data: the effect of using an ontology-based method for handling terminology changes.

    abstract:OBJECTIVE:Most existing controlled terminologies can be characterized as collections of terms, wherein the terms are arranged in a simple list or organized in a hierarchy. These kinds of terminologies are considered useful for standardizing terms and encoding data and are currently used in many existing information sys...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2011.01.005

    authors: Yu AC,Cimino JJ

    更新日期:2011-04-01 00:00:00

  • Challenges in clinical natural language processing for automated disorder normalization.

    abstract:BACKGROUND:Identifying key variables such as disorders within the clinical narratives in electronic health records has wide-ranging applications within clinical practice and biomedical research. Previous research has demonstrated reduced performance of disorder named entity recognition (NER) and normalization (or groun...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2015.07.010

    authors: Leaman R,Khare R,Lu Z

    更新日期:2015-10-01 00:00:00

  • Decision-making model for early diagnosis of congestive heart failure using rough set and decision tree approaches.

    abstract::The accurate diagnosis of heart failure in emergency room patients is quite important, but can also be quite difficult due to our insufficient understanding of the characteristics of heart failure. The purpose of this study is to design a decision-making model that provides critical factors and knowledge associated wi...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2012.04.013

    authors: Son CS,Kim YN,Kim HS,Park HS,Kim MS

    更新日期:2012-10-01 00:00:00

  • Making sense: sensor-based investigation of clinician activities in complex critical care environments.

    abstract::In many respects, the critical care workplace resembles a paradigmatic complex system: on account of the dynamic and interactive nature of collaborative clinical work, these settings are characterized by non-linear, inter-dependent and emergent activities. Developing a comprehensive understanding of the work activitie...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2011.02.007

    authors: Kannampallil T,Li Z,Zhang M,Cohen T,Robinson DJ,Franklin A,Zhang J,Patel VL

    更新日期:2011-06-01 00:00:00

  • Research-IQ: development and evaluation of an ontology-anchored integrative query tool.

    abstract::Investigators in the translational research and systems medicine domains require highly usable, efficient and integrative tools and methods that allow for the navigation of and reasoning over emerging large-scale data sets. Such resources must cover a spectrum of granularity from bio-molecules to population phenotypes...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2011.07.006

    authors: Borlawsky TB,Lele O,Payne PR

    更新日期:2011-12-01 00:00:00

  • Enhancing phylogeography by improving geographical information from GenBank.

    abstract::Phylogeography is a field that focuses on the geographical lineages of species such as vertebrates or viruses. Here, geographical data, such as location of a species or viral host is as important as the sequence information extracted from the species. Together, this information can help illustrate the migration of the...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2011.06.005

    authors: Scotch M,Sarkar IN,Mei C,Leaman R,Cheung KH,Ortiz P,Singraur A,Gonzalez G

    更新日期:2011-12-01 00:00:00

  • Monitoring Obstructive Sleep Apnea by means of a real-time mobile system based on the automatic extraction of sets of rules through Differential Evolution.

    abstract::Real-time Obstructive Sleep Apnea (OSA) episode detection and monitoring are important for society in terms of an improvement in the health of the general population and of a reduction in mortality and healthcare costs. Currently, to diagnose OSA patients undergo PolySomnoGraphy (PSG), a complicated and invasive test ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2014.02.015

    authors: Sannino G,De Falco I,De Pietro G

    更新日期:2014-06-01 00:00:00

  • Evaluating warfarin dosing models on multiple datasets with a novel software framework and evolutionary optimisation.

    abstract::Warfarin is an effective preventative treatment for arterial and venous thromboembolism, but requires individualised dosing due to its narrow therapeutic range and high individual variation. Many machine learning techniques have been demonstrated in this domain. This study evaluated the accuracy of the most promising ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2020.103634

    authors: Truda G,Marais P

    更新日期:2021-01-01 00:00:00

  • The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data.

    abstract::The ultimate goal of genomics research is to describe the network of molecules and interactions that govern all biological functions and disease processes in cells. Nonlinear interactions among genes in terms of their logic relationships play a key role for deciphering the networks of molecules that underlie cellular ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2007.11.006

    authors: Ruan X,Wang J,Li H,Perozzi RE,Perozzi EF

    更新日期:2008-08-01 00:00:00

  • Automated population of an i2b2 clinical data warehouse from an openEHR-based data repository.

    abstract:BACKGROUND:Detailed Clinical Model (DCM) approaches have recently seen wider adoption. More specifically, openEHR-based application systems are now used in production in several countries, serving diverse fields of application such as health information exchange, clinical registries and electronic medical record system...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2016.08.007

    authors: Haarbrandt B,Tute E,Marschollek M

    更新日期:2016-10-01 00:00:00

  • Prediction of clinical risks by analysis of preclinical and clinical adverse events.

    abstract::This study examines the ability of nonclinical adverse event observations to predict human clinical adverse events observed in drug development programs. In addition it examines the relationship between nonclinical and clinical adverse event observations to drug withdrawal and proposes a model to predict drug withdraw...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2015.02.008

    authors: Clark M

    更新日期:2015-04-01 00:00:00

  • A medical treatment based scoring model to detect abusive institutions.

    abstract::Medical abuse refers to a type of abnormal medical practice which is not in compliance with qualitative or ethical standards, such as excessive prescription or overbilling of medical services. Detection of such medical abuses is crucial, especially for the patients and insurance providers, because they become subject ...

    journal_title:Journal of biomedical informatics

    pub_type: 杂志文章

    doi:10.1016/j.jbi.2020.103423

    authors: Lee J,Shin H,Cho S

    更新日期:2020-07-01 00:00:00