Do polymorphic loci require large sample sizes to estimate genetic distances?

Abstract:

:The coefficient of variation of estimates of three genetic distances (standard genetic distance of Nei, chord distance, FST) was examined with computer simulation to determine if large samples (per population) are necessary to precisely estimate genetic distances at loci with high levels of polymorphism. These simulations showed that loci with high mutation rates produce estimates of genetic distance with lower coefficients of variation than loci with lower mutation rates--without requiring larger sample sizes from each population. In addition, the rate at which increasing sample sizes decreases the coefficient of variation of estimates of genetic distances was shown to be approximately determined by the value of FST between the populations being sampled. When FST was greater than 0.05, sampling fewer than 20 individuals (per population) should be sufficient. When FST was less than 0.01, sampling 100 individuals (per population) or more will be useful.

journal_name

Heredity (Edinb)

journal_title

Heredity

authors

Kalinowski ST

doi

10.1038/sj.hdy.6800548

keywords:

subject

Has Abstract

pub_date

2005-01-01 00:00:00

pages

33-6

issue

1

eissn

0018-067X

issn

1365-2540

pii

6800548

journal_volume

94

pub_type

杂志文章

相关文献

HEREDITY文献大全
  • Evolution of novel genes in three-spined stickleback populations.

    abstract::Eukaryotic genomes frequently acquire new protein-coding genes which may significantly impact an organism's fitness. Novel genes can be created, for example, by duplication of large genomic regions or de novo, from previously non-coding DNA. Either way, creation of a novel transcript is an essential early step during ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-020-0319-7

    authors: Schmitz JF,Chain FJJ,Bornberg-Bauer E

    更新日期:2020-08-01 00:00:00

  • Contemporary and historic factors influence differently genetic differentiation and diversity in a tropical palm.

    abstract::Population genetics theory predicts loss in genetic variability because of drift and inbreeding in isolated plant populations; however, it has been argued that long-distance pollination and seed dispersal may be able to maintain gene flow, even in highly fragmented landscapes. We tested how historical effective popula...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2015.30

    authors: da Silva Carvalho C,Ribeiro MC,Côrtes MC,Galetti M,Collevatti RG

    更新日期:2015-09-01 00:00:00

  • Heritability of dispersal rate and other life history traits in the Glanville fritillary butterfly.

    abstract::Knowing the variances and heritabilities (h(2)) of life history traits in populations living under natural conditions is necessary for a mechanistic understanding of respective evolutionary processes. I estimated heritabilities of several life history traits, including dispersal rate, body mass, age at first reproduct...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6801056

    authors: Saastamoinen M

    更新日期:2008-01-01 00:00:00

  • Fecundity of transgenic wild-crop hybrids of Cucurbita pepo (Cucurbitaceae): implications for crop-to-wild gene flow.

    abstract::Hybridization between crops and their weedy or wild relatives is an area of concern because the widespread use of genetically engineered crops may allow novel, beneficial transgenes to enter nearby populations. We compared fitness components of wild Cucurbita pepo from Arkansas, USA, with wild-crop hybrids derived fro...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00890.x

    authors: Spencer LJ,Snow AA

    更新日期:2001-06-01 00:00:00

  • Testing the unique amplification event and the worldwide migration hypothesis of insecticide resistance genes with sequence data.

    abstract::In the mosquito Culex pipiens, over-production of esterases is a common insecticide resistance mechanism. Different alleles at the esterase A and B loci are known to occur in natural populations, as shown by enzyme electrophoresis and RFLP studies on the esterase B locus. Here we analyse the variability of the esteras...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1996.181

    authors: Guillemaud T,Rooker S,Pasteur N,Raymond M

    更新日期:1996-11-01 00:00:00

  • Population genetic structure, worker reproduction and thelytokous parthenogenesis in the desert ant Cataglyphis sabulosa.

    abstract::In social Hymenoptera, within-colony relatedness is usually high due to the haplodiploid sex-determining system. However, factors such as the presence of multiple reproductive queens (polygyny), multiple queen matings (polyandry) or worker reproduction result in decreased relatedness among workers and the brood they r...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2008.72

    authors: Timmermans I,Hefetz A,Fournier D,Aron S

    更新日期:2008-12-01 00:00:00

  • The effect of periodic bottlenecks on the competitive ability of Drosophila pseudoobscura lines.

    abstract::Competition experiments between several Drosophila pseudoobscura strains that were previously subjected to periodic bottlenecks of different sizes and D. willistoni have been carried out. Contrary to previous results with these two species, where stable coexistence was detected, populations of D. pseudoobscura displac...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1993.8

    authors: López Bueno JA,Moya A,González-Candelas F

    更新日期:1993-01-01 00:00:00

  • Contrasting population structures in two sympatric anurans: implications for species conservation.

    abstract::A general prediction of the neutral theory of evolution is that genetic diversity should correlate positively with effective population size. We show here that diversity across eight microsatellite loci was consistently and substantially lower in one common amphibian (Bufo bufo) than in another with similar life histo...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800391

    authors: Brede EG,Beebee TJ

    更新日期:2004-02-01 00:00:00

  • Inversion polymorphisms in Trimerotropis pallidipennis (Orthoptera): clinical variation along an altitudinal gradient.

    abstract::Six populations of Trimerotropis pallidipennis located along an altitudinal gradient in the Antinaco-Los Colorados valley (La Rioja, Argentina), were cytologically analysed. The male karyotype consists of 23 chromosomes (22 + XO) with three long pairs submetacentric, the X-chromosome metacentric and the remaining ones...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1989.14

    authors: Confalonieri VA,Colombo PC

    更新日期:1989-02-01 00:00:00

  • Wolbachia distribution and cytoplasmic incompatibility based on a survey of 42 spider mite species (Acari: Tetranychidae) in Japan.

    abstract::Wolbachia are a group of maternally inherited bacteria that infect a wide range of arthropods. Wolbachia infections are known to result in the expression of various abnormal reproductive phenotypes, the best known being cytoplasmic incompatibility. The first systematic survey of 42 spider mite species in Japan reveale...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800329

    authors: Gotoh T,Noda H,Hong XY

    更新日期:2003-09-01 00:00:00

  • A general analysis of genetic models with frequency-dependent mating. II. Sexual selection for heterozygotes.

    abstract::Heterozygotes are assumed to mate with a frequency that is any general function, f(v), of their population frequency, v. Models are analysed in which the selection that determines the function f(v) acts either on one sex alone or on both sexes equally. The central equilibrium point v* = 1/2 always exists; it is stable...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1981.59

    authors: St Lawrence I,O'Donald P

    更新日期:1981-08-01 00:00:00

  • Importance of demographic history for phylogeographic inference on the arctic-alpine plant Phyllodoce caerulea in East Asia.

    abstract::Arctic-alpine plants have enormous ranges in the Northern Hemisphere. Phylogeographic studies have provided insights into their glacial survival as well as their postglacial colonization history. However, our understanding of the population dynamics of disjunct alpine populations in temperate regions remains limited. ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2015.95

    authors: Ikeda H,Sakaguchi S,Yakubov V,Barkalov V,Setoguchi H

    更新日期:2016-02-01 00:00:00

  • RAPD of controlled crosses and clones from the field suggests that hybrids are rare in the Salix alba-Salix fragilis complex.

    abstract::The polyploid Salix alba-Salix fragilis hybrid complex is rather difficult to study when using only morphological characters. Most of the features have a low diagnostic value for unambiguously identifying the hybrids, introgression patterns and population structures, though morphological traits have proved to be usefu...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2000.00712.x

    authors: Triest L,De Greef B,De Bondt R,Van Slycken J

    更新日期:2000-05-01 00:00:00

  • Evolution of apomixis loci in Pilosella and Hieracium (Asteraceae) inferred from the conservation of apomixis-linked markers in natural and experimental populations.

    abstract::The Hieracium and Pilosella (Lactuceae, Asteraceae) genera of closely related hawkweeds contain species with two different modes of gametophytic apomixis (asexual seed formation). Both genera contain polyploid species, and in wild populations, sexual and apomictic species co-exist. Apomixis is known to co-exist with s...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2014.61

    authors: Hand ML,Vít P,Krahulcová A,Johnson SD,Oelkers K,Siddons H,Chrtek J Jr,Fehrer J,Koltunow AM

    更新日期:2015-01-01 00:00:00

  • Amount and structure of intra- and interspecific genetic variation in the moss genus Polytrichum.

    abstract::Allozyme electrophoresis was used to determine amount and structure of genetic variation within and between five congeneric haploid moss species: Polytrichum formosum, P. commune, P. uliginosum, P. piliferum and P. juniperinum. For the different species, gene diversity within populations (HS) ranged from very low (0.0...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2000.00762.x

    authors: Van Der Velde M,Bijlsma R

    更新日期:2000-10-01 00:00:00

  • Distribution of genomic regions differentiating oak species assessed by QTL detection.

    abstract::Pedunculate oak and sessile oak are two sympatric interfertile species that exhibit leaf morphological differences. We aimed to detect quantitative trait loci (QTLs) of these traits in order to locate genomic regions involved in species differentiation. A total of 15 leaf morphological traits were assessed in a mixed ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800358

    authors: Saintagne C,Bodénès C,Barreneche T,Pot D,Plomion C,Kremer A

    更新日期:2004-01-01 00:00:00

  • A biometrical analysis of a mating characteristic in Drosophilia.

    abstract::A model is described for the biometrical analysis of interaction behavioural characteristics. The model is illustrated by analysis of the mating speed of Drosophila pseudoobscura derived from crosses of fast and of slow mating strains generated through artificial selection. ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1975.1

    authors: Kraemer HC,Kessler S

    更新日期:1975-02-01 00:00:00

  • Genetic variation in the invasive process of Bursaphelenchus xylophilus (Aphelenchida: Aphelenchoididae) and its possible spread routes in China.

    abstract::Pinewood nematode (Bursaphelenchus xylophilus) is an invasive species that causes a destructive forest disease-pine wilt disease. This disease has been prevalent in some countries in Asia since the 1970s. An amplified fragment length polymorphism survey was used to compare the genetic variation of native and invasive ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6801082

    authors: Cheng XY,Cheng FX,Xu RM,Xie BY

    更新日期:2008-04-01 00:00:00

  • Developments in the meiotic analysis of hybrids. I. Review of theory and optimization in triploids.

    abstract::The theory, construction and optimization of a model of chromosome pairing in triploid hybrids are re-examined and the model reconstructed. A new approach to optimization is described that removes a bias in the estimation of x, the measure of relative affinity, by weighting the observed and calculated meiotic figure f...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1992.16

    authors: Chapman CGD,Kimber G

    更新日期:1992-02-01 00:00:00

  • Detection of rare paternal chloroplast inheritance in controlled crosses of the endangered sunflower Helianthus verticillatus.

    abstract::A variety of questions in population and evolutionary biology are studied using chloroplast DNA (cpDNA). The presumed maternal inheritance in angiosperms allows for certain assumptions and calculations to be made when studying plant hybridization, phylogeography, molecular systematics and seed dispersal. Further, the ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2008.11

    authors: Ellis JR,Bentley KE,McCauley DE

    更新日期:2008-06-01 00:00:00

  • Genetic monitoring reveals temporal stability over 30 years in a small, lake-resident brown trout population.

    abstract::Knowledge of the degree of temporal stability of population genetic structure and composition is important for understanding microevolutionary processes and addressing issues of human impact of natural populations. We know little about how representative single samples in time are to reflect population genetic constit...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2012.36

    authors: Charlier J,Laikre L,Ryman N

    更新日期:2012-10-01 00:00:00

  • Sex ratio theory in geographically structured populations.

    abstract::Equilibrium sex ratios have been determined analytically under Wright's island model in order to determine the effect of population structure with limited dispersal. When mating occurs before dispersal, the dispersal rate has little or no effect, and the equilibrium sex ratio remains the same as under complete dispers...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1986.10

    authors: Bulmer MG

    更新日期:1986-02-01 00:00:00

  • Additional evidence for the genomic imprinting model of sex determination in the haplodiploid wasp Nasonia vitripennis: isolation of biparental diploid males after X-ray mutagenesis.

    abstract::The primary sex-determining signal in the haplodiploid wasp Nasonia vitripennis is not known. In haplodiploid reproduction, unfertilized eggs typically develop into uniparental haploid males and fertilized eggs into biparental diploid females. Although this reproductive strategy is common to all Hymenoptera, sex-deter...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800810

    authors: Trent C,Crosby C,Eavey J

    更新日期:2006-05-01 00:00:00

  • Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks.

    abstract::Nucleotide diversity was assessed within nine candidate genes (CGs) (in total 4.6 kb) for the time of bud burst in nine sessile oak (Quercus petraea) populations distributed in central and northern Europe. The sampled populations were selected on the basis of their contrasting times of bud burst observed in common gar...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2009.134

    authors: Derory J,Scotti-Saintagne C,Bertocchi E,Le Dantec L,Graignic N,Jauffres A,Casasoli M,Chancerel E,Bodénès C,Alberto F,Kremer A

    更新日期:2010-05-01 00:00:00

  • Demographic inferences after a range expansion can be biased: the test case of the blacktip reef shark (Carcharhinus melanopterus).

    abstract::The evolutionary history of species is a dynamic process as they modify, expand, and contract their spatial distributions over time. Range expansions (REs) occur through a series of founder events that are followed by migration among neighboring demes. The process usually results in structured metapopulations and leav...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-018-0164-0

    authors: Maisano Delser P,Corrigan S,Duckett D,Suwalski A,Veuille M,Planes S,Naylor GJP,Mona S

    更新日期:2019-06-01 00:00:00

  • Rickettsia associated with male-killing in a buprestid beetle.

    abstract::Many populations of the buprestid leaf-mining beetle, Brachys tessellatus, from central South Carolina, USA, show highly skewed sex ratios, ranging from 1.3 to 6.0 females per male. We have identified a Rickettsia bacterium that is associated with sex ratio distortion (SRD) and selective killing of male embryos in B. ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00848.x

    authors: Lawson ET,Mousseau TA,Klaper R,Hunter MD,Werren JH

    更新日期:2001-04-01 00:00:00

  • Modeling additive and non-additive effects in a hybrid population using genome-wide genotyping: prediction accuracy implications.

    abstract::Hybrids are broadly used in plant breeding and accurate estimation of variance components is crucial for optimizing genetic gain. Genome-wide information may be used to explore models designed to assess the extent of additive and non-additive variance and test their prediction accuracy for the genomic selection. Ten l...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2015.78

    authors: Bouvet JM,Makouanzi G,Cros D,Vigneron P

    更新日期:2016-02-01 00:00:00

  • Lack of genetic differentiation among widely spaced subpopulations of a butterfly with home range behaviour.

    abstract::We examine seven geographically separate subpopulations of Heliconius charithonia, a butterfly with well-documented home range behaviour, in Miami-Dade County, Florida, for genetic differentiation using cellulose acetate electrophoresis. These subpopulations exhibit little genetic variation (percent polymorphic loci =...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00830.x

    authors: Kronforst MR,Fleming TH

    更新日期:2001-02-01 00:00:00

  • Evolution of sex-specific wing shape at the widerwing locus in four species of Nasonia.

    abstract::How do morphological differences between species evolve at the genetic level? This study investigates the genetic basis of recent divergence in male wing size between species of the model parasitoid wasp Nasonia. The forewings of flightless Nasonia vitripennis males are 2.3 times smaller than males of their flighted s...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2009.146

    authors: Loehlin DW,Enders LS,Werren JH

    更新日期:2010-03-01 00:00:00

  • The clock gene cryptochrome of Bactrocera cucurbitae (Diptera: Tephritidae) in strains with different mating times.

    abstract::Differences in mating time between populations can give rise to premating reproductive isolation. Tephritid fruit flies exhibit large variation in mating time among intra- or inter-specific populations. We previously cloned the clock gene period from two strains of melon fly, Bactrocera cucurbitae; in one the individu...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2009.167

    authors: Fuchikawa T,Sanada S,Nishio R,Matsumoto A,Matsuyama T,Yamagishi M,Tomioka K,Tanimura T,Miyatake T

    更新日期:2010-04-01 00:00:00