Molecular lipophilicity calculations of chemically heterogeneous chemicals and drugs on the basis of structural similarity and physicochemical parameters.

Abstract:

:QSARs based on molecular polarizability (alpha) and H-bond acceptor factors (sigma Ca) as independent variables provided good predictability of octanol/water partition coefficients (P) for chemicals and drugs. However, for some molecules containing few functional groups, the calculated values deviated significantly from those observed. This approach gave good results when applied to a set of 138 chemicals and drugs previously studied by Mannhold and Dross who compared other methods to calculate log P values. At the same time, three variations on a molecular similarity approach were pursued. In this study, a large training set with experimentally determined octanol/water partition coefficients (P) was searched for structures closely related to the compound-of-interest. The most successful of these variations took the mean log P value of few most closely related compounds after each was adjusted for differences between their and the compound-of-interest's polarizabilities (alpha) and H-bond acceptor capacities (sigma Ca).

journal_name

SAR QSAR Environ Res

authors

Raevsky OA

doi

10.1080/10629360108033245

keywords:

subject

Has Abstract

pub_date

2001-01-01 00:00:00

pages

367-81

issue

4

eissn

1062-936X

issn

1029-046X

journal_volume

12

pub_type

杂志文章
  • Computer-assisted design of new drugs based on retrometabolic concepts.

    abstract::Retrometabolic drug design approaches incorporate metabolic and toxicological considerations into the drug design process and represent a novel, systematic methodology for the design of safe compounds. Two major design concepts aimed to increase the therapeutic index (the activity/toxicity ratio) of drugs were develop...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章,评审

    doi:10.1080/10629369808033261

    authors: Bodor N,Buchwald P,Huang MJ

    更新日期:1998-01-01 00:00:00

  • QSAR classification model for diverse series of antifungal agents based on improved binary differential search algorithm.

    abstract::An improved binary differential search (improved BDS) algorithm is proposed for QSAR classification of diverse series of antimicrobial compounds against Candida albicans inhibitors. The transfer functions is the most important component of the BDS algorithm, and converts continuous values of the donor into discrete va...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2019.1568298

    authors: Al-Fakih AM,Algamal ZY,Lee MH,Aziz M,Ali HTM

    更新日期:2019-02-01 00:00:00

  • Combined molecular dynamics and continuum solvent approaches (MM-PBSA/GBSA) to predict noscapinoid binding to γ-tubulin dimer.

    abstract::γ-tubulin plays crucial role in the nucleation and organization of microtubules during cell division. Recent studies have also indicated its role in the regulation of microtubule dynamics at the plus end of the microtubules. Moreover, γ-tubulin has been found to be over-expressed in many cancer types, such as carcinom...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2015.1070200

    authors: Suri C,Naik PK

    更新日期:2015-06-01 00:00:00

  • On the treatment of LUMO energies for their use as descriptors.

    abstract::Calculated energies of lowest unoccupied molecular orbitals (LUMOs) are frequently employed as descriptors in studies of quantitative structure-activity relationships and linear free energy relationships involving electron transfer. However, the quantum chemical programs with which these are carried out, whether Hartr...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2013.792873

    authors: Burrow PD,Modelli A

    更新日期:2013-08-01 00:00:00

  • Evaluation of the OECD QSAR Application Toolbox and Toxtree for estimating the mutagenicity of chemicals. Part 1. Aromatic amines.

    abstract::The Ames Salmonella typhimurium mutagenicity assay is a short-term bacterial reverse mutation test that was designed to detect mutagens. For several decades, it has been used in research laboratories and by regulatory agencies throughout the world for the detection and characterization of potential mutagens among natu...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2010.528959

    authors: Devillers J,Mombelli E

    更新日期:2010-10-01 00:00:00

  • Collection and preparation of molecular databases for virtual screening.

    abstract::Drug discovery and development research is undergoing a paradigm shift from a linear and sequential nature of the various steps involved in the drug discovery process of the past to the more parallel approach of the present, due to a lack of sufficient correlation between activities estimated by in vitro and in vivo a...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629360600884462

    authors: Saxena AK,Prathipati P

    更新日期:2006-08-01 00:00:00

  • About the prediction of molecular properties using the fundamental Quantum QSPR (QQSPR) equation.

    abstract::The present theoretical study analyses the Quantum QSPR fundamental linear equation predictive power. Two main alternative algorithms, among several possible choices, are fully described in an add one and add many basis, while the other possibilities are only sketched out. It is shown that one can also apply the descr...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629360701304113

    authors: Carbó-Dorca R

    更新日期:2007-05-01 00:00:00

  • Identification of potential HIV-1 integrase strand transfer inhibitors: in silico virtual screening and QM/MM docking studies.

    abstract::HIV-1 integrase (IN) is a retroviral enzyme that catalyses integration of the reverse-transcribed viral DNA into the host genome, which is necessary for efficient viral replication. In this study, we have performed an in silico virtual screening for the identification of potential HIV-1 IN strand transfer (ST) inhibit...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2013.772919

    authors: Reddy KK,Singh SK,Tripathi SK,Selvaraj C

    更新日期:2013-01-01 00:00:00

  • QSAR models of cytochrome P450 enzyme 1A2 inhibitors using CoMFA, CoMSIA and HQSAR.

    abstract::Quantitative structure-activity relationship (QSAR) studies were conducted on an in-house database of cytochrome P450 enzyme 1A2 inhibitors using the comparative molecular field analysis (CoMFA), comparative molecular similarity analysis (CoMSIA) and hologram QSAR (HQSAR) approaches. The database consisted of 36 activ...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2011.623320

    authors: Sridhar J,Foroozesh M,Stevens CL

    更新日期:2011-10-01 00:00:00

  • Synthesis, antifeedant activity against Coleoptera and 3D QSAR study of alpha-asarone derivatives.

    abstract::For the first time, a set of 56 compounds representing structural derivatives of naturally occurring alpha-asarone as an antifeedants against stored product pests Sitophilus granarius L., Trogoderma granarium Ev., and Tribolium confusum Duv., were subjected to the 3D QSAR studies. Three-dimensional quantitative struct...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2013.875061

    authors: Łozowicka B,Kaczyński P,Magdziarz T,Dubis AT

    更新日期:2014-01-01 00:00:00

  • Prediction of acute mammalian toxicity from QSARs and interspecies correlations.

    abstract::With the ever-growing number of xenobiotics that can potentially contaminate the environment, the determination of their mammalian toxicity is of prime importance. In this context, LD50 tests on rats and mice have been used for a long time to express the relative hazard associated with the acute toxicity of inorganic ...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章,评审

    doi:10.1080/10629360903278651

    authors: Devillers J,Devillers H

    更新日期:2009-07-01 00:00:00

  • Creation of predictive models of aquatic toxicity of environmental pollutants with different mechanisms of action on the basis of molecular similarity and HYBOT descriptors.

    abstract::Over half of known industrial pollutants have minimal toxic effect, in line with the concept of "baseline toxicity"; such toxicity usually correlates well with lipophilicity. The remainder require additional descriptors in order to model their toxicity by the QSAR approach. Hence, it has not been possible, to date, to...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629360412331297498

    authors: Raevsky OA,Dearden JC

    更新日期:2004-10-01 00:00:00

  • Structure-activity relationship study of trifluoromethylketone inhibitors of insect juvenile hormone esterase: comparison of several classification methods.

    abstract::Juvenile hormone esterase (JHE) plays a key role in the development and metamorphosis of holometabolous insects. Its inhibitors could possibly be targeted for insect control. Conversely, JHE may also be involved in endocrine disruption by xenobiotics, resulting in detrimental effects in beneficial insects. There is th...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2014.919959

    authors: Doucet JP,Doucet-Panaye A

    更新日期:2014-01-01 00:00:00

  • Strategic selection of chemicals for testing. Part I. Functionalities and performance of basic selection methods.

    abstract::To develop quantitative structure-activity relationships (QSAR) models capable of predicting adverse effects for large chemical inventories and diverse structures, an interactive approach is presented that includes testing of strategically selected chemicals to expand the scope of a preliminary model to cover a target...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629360902723996

    authors: Aladjov H,Todorov M,Schmieder P,Serafimova R,Mekenyan O,Veith G

    更新日期:2009-01-01 00:00:00

  • First report on exploring classification and regression based QSAR modelling of Plasmodium falciparum glycogen synthase kinase (PfGSK-3) inhibitors.

    abstract::Recent advances in the knowledge of parasite biology have unveiled many new antimalarial targets for drug development. The glycogen synthase kinase-3 from Plasmodium falciparum (PfGSK-3) plays an active role in the completion of the asexual erythrocytic stage of P. falciparum life cycle. Due to the limited availabilit...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2015.1104518

    authors: Balasaheb Aher R,Roy K

    更新日期:2015-01-01 00:00:00

  • Application of variable anti-connectivity index to active sites. Modelling pK(a) values of aliphatic monocarboxylic acids.

    abstract::A partial distance-weighted variable anti-connectivity topological index was introduced for modelling pK(a) values of 31 aliphatic carboxylic acids and haloalkyl-carboxylic acids. The partial distance-weighted variable anti-connectivity index showed superior modelling capabilities compared with the index calculated fr...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2012.751552

    authors: Sčavničar A,Balaban AT,Pompe M

    更新日期:2013-01-01 00:00:00

  • A plausible mechanism for the mutagenic activity (Salmonella typhimurium TA100) of MX compounds: a formation of CG-CG(+)-CG radical cation by one-electron reduction.

    abstract::Combining our previous QSAR work with recent high-level quantum mechanical calculations, a plausible mechanism for the mutagenic activity of halogenated furanones (so called MX compounds) in Salmonella typhimurium TA100 tester strain is proposed. The mechanism involves one-electron reduction as a key step and it seems...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629369708039134

    authors: Tuppurainen K

    更新日期:1997-01-01 00:00:00

  • A model validation and consensus building environment.

    abstract::Over half of the failures in drug development are due to problems with the absorption, distribution, metabolism, excretion, and toxicity, or ADME/Tox properties of a candidate compound. The utilization of in silico tools to predict ADME/Tox and physicochemical properties holds great potential for reducing the attritio...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10659360600787551

    authors: Abshear T,Banik GM,D'Souza ML,Nedwed K,Peng C

    更新日期:2006-06-01 00:00:00

  • Assessing toxicological data quality: basic principles, existing schemes and current limitations.

    abstract::Existing toxicological data may be used for a variety of purposes such as hazard and risk assessment or toxicity prediction. The potential use of such data is, in part, dependent upon their quality. Consideration of data quality is of key importance with respect to the application of chemicals legislation such as REAC...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2012.664825

    authors: Przybylak KR,Madden JC,Cronin MT,Hewitt M

    更新日期:2012-07-01 00:00:00

  • Pharmacophore modelling, atom-based 3D-QSAR generation and virtual screening of molecules projected for mPGES-1 inhibitory activity.

    abstract::COX-2 inhibitors exhibit anticancer effects in various cancer models but due to the adverse side effects associated with these inhibitors, targeting molecules downstream of COX-2 (such as mPGES-1) has been suggested. Even after calls for mPGES-1 inhibitor design, to date there are only a few published inhibitors targe...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2016.1273971

    authors: Misra S,Saini M,Ojha H,Sharma D,Sharma K

    更新日期:2017-01-01 00:00:00

  • Investigation of anticancer activity of macrocyclic Schiff bases by means of 4D-QSAR based on simplex representation of molecular structure.

    abstract::Influence of the molecular structure of macrocyclic pyridinophanes, their analogues and some other compounds on anticancer activity (Leukemia, central nervous system (CNS) cancer, prostate cancer, breast cancer, melanoma, non-small cell lung cancer, colon cancer, ovarian cancer, renal cancer) was investigated by means...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10659360500037206

    authors: Kuz'min VE,Artemenko AG,Lozytska RN,Fedtchouk AS,Lozitsky VP,Muratov EN,Mescheriakov AK

    更新日期:2005-06-01 00:00:00

  • Drug discovery studies on quinoline-based derivatives as potential antimalarial agents.

    abstract::Molecular modelling studies were performed to identify the essential structural requirements of quinoline-based derivatives for improving their antimalarial activity. The developed CoMFA, CoMSIA and HQSAR models for a training set comprising 37 derivatives showed good statistical significance in terms of internal cros...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2013.875484

    authors: Sharma R,Patil S,Maurya P

    更新日期:2014-01-01 00:00:00

  • Pharmacological repositioning of Achyranthes aspera as an antidepressant using pharmacoinformatic tools PASS and PharmaExpert: a case study with wet lab validation.

    abstract::Traditional knowledge guides the use of plants for restricted therapeutic indications, but their pharmacological actions may be found beyond their ethnic therapeutic indications employing emerging computational tools. In this context, the present study was envisaged to explore the novel pharmacological effect of Achyr...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2017.1408683

    authors: Goel RK,Gawande DY,Lagunin AA,Poroikov VV

    更新日期:2018-01-01 00:00:00

  • Antibacterial activity and QSAR of chalcones against biofilm-producing bacteria isolated from marine waters.

    abstract::Biofouling in the marine environment is a major problem. In this study, three marine organisms, namely Bacillus flexus (LD1), Pseudomonas fluorescens (MD3) and Vibrio natriegens (MD6), were isolated from biofilms formed on polymer and metal surfaces immersed in ocean water. Phylogenetic analysis of these three organis...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/10629361003771009

    authors: Sivakumar PM,Prabhawathi V,Doble M

    更新日期:2010-04-01 00:00:00

  • Fragment-similarity-based QSAR (FS-QSAR) algorithm for ligand biological activity predictions.

    abstract::Quantitative structure-activity relationship (QSAR) studies are useful computational tools often used in drug discovery research and in many scientific disciplines. In this study, a robust fragment-similarity-based QSAR (FS-QSAR) algorithm was developed to correlate structures with biological activities by integrating...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2011.569943

    authors: Myint KZ,Ma C,Wang L,Xie XQ

    更新日期:2011-06-01 00:00:00

  • Identification of structural fingerprints for ABCG2 inhibition by using Monte Carlo optimization, Bayesian classification, and structural and physicochemical interpretation (SPCI) analysis.

    abstract::The human breast cancer resistance protein (BCRP), one of the members of the large ATP binding cassette (ABC) transporter superfamily, is crucial for resistance against chemotherapeutic agents. Currently, it has been emerged as one of the best biological targets for the designing of small molecule drugs capable of eli...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2020.1771769

    authors: Ghosh K,Bhardwaj B,Amin SA,Jha T,Gayen S

    更新日期:2020-06-01 00:00:00

  • Probing molecular mechanism of inhibitor bindings to bromodomain-containing protein 4 based on molecular dynamics simulations and principal component analysis.

    abstract::It is well known that bromodomain-containing protein 4 (BRD4) has been thought as a promising target utilized for treating various human diseases, such as inflammatory disorders, malignant tumours, acute myelogenous leukaemia (AML), bone diseases, etc. For this study, molecular dynamics (MD) simulations, binding free ...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2020.1777584

    authors: Wu SL,Wang LF,Sun HB,Wang W,Yu YX

    更新日期:2020-07-01 00:00:00

  • Predicting the biodegradation products of perfluorinated chemicals using CATABOL.

    abstract::Perfluorinated chemicals (PFCs) form a special category of organofluorine compounds with particularly useful and unique properties. Their large use over the past decades increased the interest in the study of their environmental fate. Fluorocarbons may have direct or indirect environmental impact through the products ...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936032000169688

    authors: Dimitrov S,Kamenska V,Walker JD,Windle W,Purdy R,Lewis M,Mekenyan O

    更新日期:2004-02-01 00:00:00

  • Straightforward MIA-QSTR evaluation of environmental toxicities of aromatic aldehydes to Tetrahymena pyriformis.

    abstract::Aldehydes are toxic environmental contaminants which cause severe health hazards. There is a growing need by industries and regulatory agencies for the development of tools able to assess the potential hazardous effects of chemicals on living organisms. In this background, multivariate image analysis combined with qua...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2013.840678

    authors: Asadollahi-Baboli M

    更新日期:2013-01-01 00:00:00

  • Structural exploration of hydroxyethylamines as HIV-1 protease inhibitors: new features identified.

    abstract::The current study deals with chemometric modelling strategies (Naïve Bayes classification, hologram-based quantitative structure-activity relationship (HQSAR), comparative molecular field analysis (CoMFA) and comparative molecular similarity index analysis (CoMSIA)) to explore the important features of hydroxylamine d...

    journal_title:SAR and QSAR in environmental research

    pub_type: 杂志文章

    doi:10.1080/1062936X.2018.1447511

    authors: Amin SA,Adhikari N,Bhargava S,Jha T,Gayen S

    更新日期:2018-05-01 00:00:00