The evolution of nuclear receptors: evidence from the coral Acropora.

Abstract:

:We have amplified and sequenced PCR products derived from 10 nuclear receptor (NR) genes from the anthozoan cnidarian Acropora millepora, including five products corresponding to genes not previously reported from the phylum Cnidaria. cDNAs corresponding to seven of these products were sequenced and at least three encode full-length proteins, increasing the number of complete cnidarian NR coding sequences from one to four. All clear orthologs of Acropora NRs either lack an activation domain or lack a known ligand, consistent with the idea that the ancestral nuclear receptor was without a ligand. Phylogenetic analyses indicate that most, and possibly all, presently identified cnidarian NRs are members of NR subfamily 2, suggesting that the common ancestor of all known nuclear receptors most resembled members of this subfamily.

journal_name

Mol Phylogenet Evol

authors

Grasso LC,Hayward DC,Trueman JW,Hardie KM,Janssens PA,Ball EE

doi

10.1006/mpev.2001.0994

keywords:

subject

Has Abstract

pub_date

2001-10-01 00:00:00

pages

93-102

issue

1

eissn

1055-7903

issn

1095-9513

pii

S1055790301909947

journal_volume

21

pub_type

杂志文章
  • Molecular phylogeny and evolution of the freshwater eel, genus Anguilla.

    abstract::A molecular phylogenetic analysis was conducted on all of the known catadromous eel species of the genus Anguilla to assess their relationships and evolutionary history. The analyses of a total of 1427 bp of the mitochondrial 16S ribosomal RNA and 1140 bp of the complete cytochrome b gene sequences suggested that the ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.2001.0959

    authors: Aoyama J,Nishida M,Tsukamoto K

    更新日期:2001-09-01 00:00:00

  • Phylogenetic position of Protoopalina intestinalis based on SSU rRNA gene sequence.

    abstract::A robust recognition of phylogenetic affinities of Opalinidae-the peculiar multinucleated intestine commensals of frogs-is hindered by the absence of reliable molecular data. Up to now all attempts to sequence opalinid genes failed, as the obtained sequences labeled as Protoopalina intestinalis, Cepedea virguloidea, a...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.05.009

    authors: Kostka M,Hampl V,Cepicka I,Flegr J

    更新日期:2004-10-01 00:00:00

  • Surviving the Messinian Salinity Crisis? Divergence patterns in the genus Dendropoma (Gastropoda: Vermetidae) in the Mediterranean Sea.

    abstract::Four genetically distinct clades were recently described under the name Dendropoma petraeum, a Mediterranean endemic vermetid gastropod. The aim of this work is to date the processes that drove to the diversification within this taxon and to relate them to the corresponding historical events occurred in the Mediterran...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.05.004

    authors: Calvo M,Alda F,Oliverio M,Templado J,Machordom A

    更新日期:2015-10-01 00:00:00

  • Phylogenetic analyses provide insights into the historical biogeography and evolution of Brachyrhaphis fishes.

    abstract::The livebearing fish genus Brachyrhaphis (Poeciliidae) has become an increasingly important model in evolution and ecology research, yet the phylogeny of this group is not well understood, nor has it been examined thoroughly using modern phylogenetic methods. Here, we present the first comprehensive phylogenetic analy...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.04.013

    authors: Ingley SJ,Reina RG,Bermingham E,Johnson JB

    更新日期:2015-08-01 00:00:00

  • Phylogeny of Celastraceae subfamily Hippocrateoideae inferred from morphological characters and nuclear and plastid loci.

    abstract::The phylogeny of Celastraceae subfamily Hippocrateoideae (∼ 100 species and 19 genera in the Old and New World tropics) was inferred using morphological characters together with plastid (matK, trnL-F) and nuclear (ITS and 26S rDNA) genes. The subfamily is easily recognized by the synapomorphies of transversely flatten...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.02.017

    authors: Coughenour JM,Simmons MP,Lombardi JA,Yakobson K,Archer RH

    更新日期:2011-05-01 00:00:00

  • The hemagglutinin mutation E391K of pandemic 2009 influenza revisited.

    abstract::Phylogenetic analyses based on small to moderately sized sets of sequential data lead to overestimating mutation rates in influenza hemagglutinin (HA) by at least an order of magnitude. Two major underlying reasons are: the incomplete lineage sorting, and a possible absence in the analyzed sequences set some of key mi...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.08.020

    authors: Radomski JP,Płoński P,Zagórski-Ostoja W

    更新日期:2014-01-01 00:00:00

  • Bricklebush (Brickellia) phylogeny reveals dimensions of the great Asteraceae radiation in Mexico.

    abstract::Data from molecular phylogenetics were used to assess aspects of diversity and relationships in Brickellia, a large and widespread genus of Eupatorieae. The dataset included sequence data from nuclear ribosomal ITS, ETS, and plastid psbA-trnH regions. An initial question was to assess the monophyly of the genus and wh...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.02.007

    authors: Schilling EE,Panero JL,Crozier BS,Scott RW,Dávila P

    更新日期:2015-04-01 00:00:00

  • Phylogenetic analysis of chloroplast DNA variation in Coffea L.

    abstract::The trnL-trnF intergenic spacer of cpDNA has been sequenced from 38 tree samples representing 23 Coffea taxa and the related genus Psilanthus. These sequences were used for phylogenetic reconstruction using parsimony analyses. The results suggest a radial mode of speciation and a recent origin in Africa for the genus ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1997.0453

    authors: Cros J,Combes MC,Trouslot P,Anthony F,Hamon S,Charrier A,Lashermes P

    更新日期:1998-02-01 00:00:00

  • Incomplete sterols and hopanoids pathways in ciliates: gene loss and acquisition during evolution as a source of biosynthetic genes.

    abstract::Polycyclic triterpenoids, such as sterols and hopanoids, are essential components of plasmatic membrane in eukaryotic organisms. Although it is generally assumed that ciliates do not synthesize sterols, and many of them are indeed auxotrophic, a large set of annotated genomic sequences and experimental data from recen...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章,评审

    doi:10.1016/j.ympev.2014.01.026

    authors: Tomazic ML,Poklepovich TJ,Nudel CB,Nusblat AD

    更新日期:2014-05-01 00:00:00

  • Madagascar sheds new light on the molecular systematics and biogeography of grammitid ferns: New unexpected lineages and numerous long-distance dispersal events.

    abstract::Based on a worldwide phylogenetic framework filling the taxonomic gap of Madagascar and surrounding islands of the Western Indian Ocean (WIO), we revisited the systematics of grammitid fern species (Polypodiaceae). We also investigated the biogeographic origin of the extant diversity in Madagascar and estimated the re...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.03.005

    authors: Bauret L,Gaudeul M,Sundue MA,Parris BS,Ranker TA,Rakotondrainibe F,Hennequin S,Ranaivo J,Selosse MA,Rouhan G

    更新日期:2017-06-01 00:00:00

  • Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae).

    abstract::All taxa endemic to the Qinghai-Tibet Plateau are hypothesized to have originated in situ or from immediately adjacent areas because of the relatively recent formation of the plateau since the Pliocene, followed by the large-scaled biota extinction and recession caused by the Quaternary ice sheet. However, identificat...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00039-8

    authors: Liu JQ,Gao TG,Chen ZD,Lu AM

    更新日期:2002-06-01 00:00:00

  • Phylogeny of rodentia (Mammalia) inferred from the nuclear-encoded gene IRBP.

    abstract::The order Rodentia includes nearly half of all living mammalian species. Phylogenetic relationships among 22 species of rodents were investigated by use of a 1.2-kb region from exon 1 of the single-copy nuclear gene IRBP. IRBP has been extensively used for study of interordinal phylogeny in mammals, which allowed incl...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.2001.0945

    authors: DeBry RW,Sagel RM

    更新日期:2001-05-01 00:00:00

  • Molecular phylogeny and character evolution in the Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora).

    abstract::In this study, we present a molecular phylogeny for the west Palaearctic Helicidae sensu lato based on sequence data from two mitochondrial (COI, 16S rDNA) and two nuclear (ITS-1, 18S rDNA) genes. Maximum likelihood analysis and Bayesian inference revealed well supported monophyletic clades partly conflicting traditio...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.03.004

    authors: Steinke D,Albrecht C,Pfenninger M

    更新日期:2004-09-01 00:00:00

  • Integrative inference of population history in the Ibero-Maghrebian endemic Pleurodeles waltl (Salamandridae).

    abstract::Inference of population histories from the molecular signatures of past demographic processes is challenging, but recent methodological advances in species distribution models and their integration in time-calibrated phylogeographic studies allow detailed reconstruction of complex biogeographic scenarios. We apply an ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.04.022

    authors: Gutiérrez-Rodríguez J,Barbosa AM,Martínez-Solano Í

    更新日期:2017-07-01 00:00:00

  • Phylogenetic and biogeographic analyses of the Sino-Himalayan endemic genus Cyananthus (Campanulaceae) and implications for the evolution of its sexual system.

    abstract::Cyananthus (Campanulaceae) is a small genus consisting of ca. 20 species endemic to the Sino-Himalayan region. Based on phylogenetic analysis using nuclear ribosomal ITS and four plastid markers (matK, rbcL, psbA-trnH and trnG-S), our results strongly support the monophyly of Cyananthus and its close relationship with...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.04.027

    authors: Zhou Z,Hong D,Niu Y,Li G,Nie Z,Wen J,Sun H

    更新日期:2013-09-01 00:00:00

  • Can the current molecular arsenal adequately track rapid divergence events within Simuliidae (Diptera)?

    abstract::Ancient rapid divergence events, such as those that took place during the Mesozoic, are pervasive in evolution and represent a major challenge to phylogenetic biologists. The number of molecular phylogenetic studies in which rapid divergence has been invoked to account for poor phylogenetic resolution has steadily inc...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00397-4

    authors: Moulton JK

    更新日期:2003-04-01 00:00:00

  • The evolutionary history of seahorses (Syngnathidae: Hippocampus): molecular data suggest a West Pacific origin and two invasions of the Atlantic Ocean.

    abstract::Sequence data derived from four markers (the nuclear RP1 and Aldolase and the mitochondrial 16S rRNA and cytochrome b genes) were used to determine the phylogenetic relationships among 32 species belonging to the genus Hippocampus. There were marked differences in the rate of evolution among these gene fragments, with...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00214-8

    authors: Teske PR,Cherry MI,Matthee CA

    更新日期:2004-02-01 00:00:00

  • Molecules and morphology reveal 'new' widespread North American freshwater mussel species (Bivalvia: Unionidae).

    abstract::In the Family Unionidae, the greatest radiation of freshwater mussels, malacologists have been misled by extreme intraspecific shell variation and conversely interspecific conchological stasis or convergence. We characterized the genetic and morphological diversity of two phenotypes of Lampsilis teres from specimens (...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.05.029

    authors: Keogh SM,Simons AM

    更新日期:2019-09-01 00:00:00

  • Phylogeography of the Galápagos hawk (Buteo galapagoensis): a recent arrival to the Galápagos Islands.

    abstract::Galápagos hawks (Buteo galapagoensis) are one of the most inbred bird species in the world, living in small, isolated island populations. We used mitochondrial sequence and nuclear minisatellite data to describe relationships among Galápagos hawk populations and their colonization history. We sampled 10 populations (e...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.11.014

    authors: Bollmer JL,Kimball RT,Whiteman NK,Sarasola JH,Parker PG

    更新日期:2006-04-01 00:00:00

  • Molecular phylogeny and population structure of the codling moth (Cydia pomonella) in Central Europe: I. Ancient clade splitting revealed by mitochondrial haplotype markers.

    abstract::The codling moth (Cydia pomonella L., Tortricidae, Lepidoptera) is an important pest of pome fruit with global distribution. It has adapted successfully to different habitats by forming various ecotypes and populations, often termed strains, which differ among each other in several morphological, developmental, and ph...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.05.026

    authors: Meraner A,Brandstätter A,Thaler R,Aray B,Unterlechner M,Niederstätter H,Parson W,Zelger R,Dalla Via J,Dallinger R

    更新日期:2008-09-01 00:00:00

  • Alignment-free distance measure based on return time distribution for sequence analysis: applications to clustering, molecular phylogeny and subtyping.

    abstract::The data deluge in post-genomic era demands development of novel data mining tools. Existing molecular phylogeny analyses (MPAs) developed for individual gene/protein sequences are alignment-based. However, the size of genomic data and uncertainties associated with alignments, necessitate development of alignment-free...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.07.003

    authors: Kolekar P,Kale M,Kulkarni-Kale U

    更新日期:2012-11-01 00:00:00

  • Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus).

    abstract::This study details the phylogeographic pattern of the white-throated dipper (Cinclus cinclus), a Palearctic, temperate, passerine bird that is exclusively associated with flowing water. Our results reveal a complex phylogeographic structure with at least five distinct lineages for the Western Palearctic region. As for...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.07.025

    authors: Hourlay F,Libois R,D'Amico F,Sarà M,O'Halloran J,Michaux JR

    更新日期:2008-11-01 00:00:00

  • Phylogeography of Pseudacris regilla (Anura: Hylidae) in western North America, with a proposal for a new taxonomic rearrangement.

    abstract::The Baja California populations of Pseudacris regilla, a widespread species in Western North America ranging from British Columbia to southern Baja California, are characterized by extensive geographic fragmentation. We performed phylogeographic and historical demographic analyses on 609 bp of the cytochrome b mitocho...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.10.011

    authors: Recuero E,Martínez-Solano I,Parra-Olea G,García-París M

    更新日期:2006-05-01 00:00:00

  • Phylogenetic analysis of the Argonaute protein family in platyhelminths.

    abstract::Argonaute proteins (AGOs) are mediators of gene silencing via recruitment of small regulatory RNAs to induce translational regression or degradation of targeted molecules. Platyhelminths have been reported to express microRNAs but the diversity of AGOs in the phylum has not been explored. Phylogenetic relationships of...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.11.014

    authors: Zheng Y

    更新日期:2013-03-01 00:00:00

  • Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences.

    abstract::In spite of several classification attempts among taxa of the genus Lepus, phylogenetic relationships still remain poorly understood. Here, we present molecular genetic evidence that may resolve some of the current incongruities in the phylogeny of the leporids. The complete mitochondrial cytb, 12S genes, and parts of...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.05.006

    authors: Wu C,Wu J,Bunch TD,Li Q,Wang Y,Zhang YP

    更新日期:2005-10-01 00:00:00

  • Molecular phylogeny of the Neotropical fish genus Tetragonopterus (Teleostei: Characiformes: Characidae).

    abstract::Tetragonopterinae encompasses characid species of the genus Tetragonopterus, which are widely distributed throughout east of the Andes in South America. While taxonomy has recently clarified the species diversity and molecular evidence strongly supports the monophyly of Tetragonopterus, no interspecific relationship s...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.10.022

    authors: Melo BF,Benine RC,Silva GSC,Avelino GS,Oliveira C

    更新日期:2016-01-01 00:00:00

  • Molecular evolution of the maize sex-determining gene TASSELSEED2 in Bouteloua (Poaceae).

    abstract::The majority of angiosperms produce hermaphrodite flowers, while a lesser number (20-30%) produce unisexual flowers. Little is known about the molecular biology of sex-determination in angiosperms, however, a few sex-determining genes have been cloned from the model system Zea mays. One of these genes is Tasselseed2 (...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.09.001

    authors: Kinney MS,Columbus JT,Friar EA

    更新日期:2003-12-01 00:00:00

  • Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): inferences from a genomic transect and the multispecies coalescent.

    abstract::Reconstructing species trees by incorporating information from many independent gene trees reduces the confounding influence of stochastic lineage sorting. Such analyses are particularly important for taxa that share polymorphisms due to incomplete lineage sorting or introgressive hybridization. We investigated phylog...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.08.008

    authors: Lavretsky P,McCracken KG,Peters JL

    更新日期:2014-01-01 00:00:00

  • Rhodinocichla rosea is an emberizid (Aves; Passeriformes) based on mitochondrial DNA analyses.

    abstract::The systematic position of the avian species Rhodinocichla rosea is unclear. Recent opinions are that it is either a mockingbird (family Mimidae) or a tanager (Thraupinae; Emberizidae). In either case, it would be an atypical member of the family. We sequenced approximately 600 bases of the mitochondrial cytochrome ox...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1997.0426

    authors: Seutin G,Bermingham E

    更新日期:1997-10-01 00:00:00

  • The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects.

    abstract::The complete nucleotide sequences of the mt genome from the firefly, Pyrococelia rufa (Coeleoptera: Lampyridae) was determined. The circular genome is 17,739-bp long, and contains a typical gene complement, order, and arrangement identical to Drosophila yacuba. The presence of 1,724-bp long intergenic spacer in the P....

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.03.009

    authors: Bae JS,Kim I,Sohn HD,Jin BR

    更新日期:2004-09-01 00:00:00