Inferring Recombination Patterns In African Populations.

Abstract:

:While several high-resolution recombination maps exist for European-descent populations, the recombination landscape of African populations remains relatively understudied. Given that there is high genetic divergence among groups in Africa, it is possible that recombination hotspots also diverge significantly. Both limitations and opportunities exist for developing recombination maps for these populations. In this review, we discuss various recombination inference methods, and the strengths and weaknesses of these methods in analysing recombination in African-descent populations. Furthermore, we provide a decision tree and recommendations for which inference method to use in various research contexts. Establishing an appropriate methodology for recombination rate inference in a particular study will improve the accuracy of various downstream analyses including but not limited to local ancestry inference, haplotype phasing, fine-mapping of GWAS loci and genome assemblies.

journal_name

Hum Mol Genet

journal_title

Human molecular genetics

authors

Eeden G,Uren C,Möller M,Henn BM

doi

10.1093/hmg/ddab020

subject

Has Abstract

pub_date

2021-01-14 00:00:00

eissn

0964-6906

issn

1460-2083

pii

6096959

pub_type

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