Glycoside hydrolase family 13 α-glucosidases encoded by Bifidobacterium breve UCC2003; A comparative analysis of function, structure and phylogeny.

Abstract:

:Bifidobacterium breve is a noted inhabitant and one of the first colonizers of the human gastro intestinal tract (GIT). The ability of this bacterium to persist in the GIT is reflected by the abundance of carbohydrate-active enzymes that are encoded by its genome. One such family of enzymes is represented by the α-glucosidases, of which three, Agl1, Agl2 and MelD, have previously been identified and characterized in the prototype B. breve strain UCC2003. In this report, we describe an additional B. breve UCC2003-encoded α-glucosidase, along with a B. breve UCC2003-encoded α-glucosidase-like protein, designated here as Agl3 and Agl4, respectively, which together with the three previously described enzymes belong to glycoside hydrolase (GH) family 13. Agl3 was shown to exhibit hydrolytic specificity towards the α-(1→6) linkage present in palatinose; the α-(1→3) linkage present in turanose; the α-(1→4) linkages found in maltotriose and maltose; and to a lesser degree, the α-(1→2) linkage found in sucrose and kojibiose; and the α-(1→5) linkage found in leucrose. Surprisingly, based on the substrates analyzed, Agl4 did not exhibit biologically relevant α-glucosidic activity. With the presence of four functionally active GH13 α-glucosidases, B. breve UCC2003 is capable of hydrolyzing all α-glucosidic linkages that can be expected in glycan substrates in the lower GIT. This abundance of α-glucosidases provides B. breve UCC2003 with an adaptive ability and metabolic versatility befitting the transient nature of growth substrates in the GIT.

journal_name

Int J Food Microbiol

authors

Kelly ED,Bottacini F,O'Callaghan J,Motherway MO,O'Connell KJ,Stanton C,van Sinderen D

doi

10.1016/j.ijfoodmicro.2016.02.014

subject

Has Abstract

pub_date

2016-05-02 00:00:00

pages

55-65

eissn

0168-1605

issn

1879-3460

pii

S0168-1605(16)30080-0

journal_volume

224

pub_type

杂志文章
  • Salmonella in chicken meat, eggs and humans; Adelaide, South Australia, 2008.

    abstract::Varieties of Salmonella enterica are the second most commonly notified causes of gastroenteritis in Australia. Outbreaks of Salmonella infection are commonly linked to food, particularly foods containing chicken meat and eggs. A number of European countries have introduced interventions based on Salmonella surveillanc...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2011.02.004

    authors: Fearnley E,Raupach J,Lagala F,Cameron S

    更新日期:2011-04-29 00:00:00

  • Munkoyo beverage, a traditional Zambian fermented maize gruel using Rhynchosia root as amylase source.

    abstract::A typical munkoyo beverage was made by fermenting Rhynchosia heterophylla root extract-cooked maize meal mixture with Lactobacillus confusus LZI and Saccharomyces cerevisiae YZ20. The fermented munkoyo beverage had a pH of 3.3, lactic acid content of 60 mmol/l, ethanol 320-410 mmol/l and a characteristic 'munkoyo' aro...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(96)01195-6

    authors: Zulu RM,Dillon VM,Owens JD

    更新日期:1997-03-03 00:00:00

  • Detection, isolation and enumeration of Yersinia enterocolitica from raw pork.

    abstract::The methods available for the isolation of Yersinia enterocolitica from foods are generally considered to be less than optimal, and methods for estimation of numbers are lacking. Such methods are needed to understand better the significance of foodborne yersiniosis and to provide data for exposure assessment. We descr...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2007.11.069

    authors: Hudson JA,King NJ,Cornelius AJ,Bigwood T,Thom K,Monson S

    更新日期:2008-03-31 00:00:00

  • Isolation of baker's yeast mutants with proline accumulation that showed enhanced tolerance to baking-associated stresses.

    abstract::During bread-making processes, yeast cells are exposed to baking-associated stresses such as freeze-thaw, air-drying, and high-sucrose concentrations. Previously, we reported that self-cloning diploid baker's yeast strains that accumulate proline retained higher-level fermentation abilities in both frozen and sweet do...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2016.09.015

    authors: Tsolmonbaatar A,Hashida K,Sugimoto Y,Watanabe D,Furukawa S,Takagi H

    更新日期:2016-12-05 00:00:00

  • Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept.

    abstract::Repeated Listeria outbreaks particularly associated with Ready-To-Eat (RTE) delicatessen meat products have been reported annually at global level. The most frequent scenario that led to foodborne outbreaks was the post-thermal treatment cross-contamination of deli meat products during slicing and modified atmosphere ...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2017.06.015

    authors: Nastasijevic I,Milanov D,Velebit B,Djordjevic V,Swift C,Painset A,Lakicevic B

    更新日期:2017-09-18 00:00:00

  • Pulsed high electric field causes 'all or nothing' membrane damage in Listeria monocytogenes and Salmonella typhimurium, but membrane H+-ATPase is not a primary target.

    abstract::Salmonella typhimurium (CRA 1005) was more sensitive than Listeria monocytogenes (NCTC 11994) to pulsed high electric field (PHEF) treatment in distilled water (10, 15 and 20 kV/cm), 10 mM Tris-maleate buffer, pH 7.4 (15 kV/cm) and model beef broth (0.75%, w/v; 15 kV/cm). Sublethal injury could not be detected using a...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(99)00022-7

    authors: Simpson RK,Whittington R,Earnshaw RG,Russell NJ

    更新日期:1999-04-01 00:00:00

  • Predictive model of the effect of CO2, pH, temperature and NaCl on the growth of Listeria monocytogenes.

    abstract::The growth responses of L. monocytogenes as affected by CO2 concentration (0-100% v/v, balance nitrogen), NaCl concentration (0.5-8.0% w/v), pH (4.5-7.0) and temperature (4-20 degrees C) were studied in laboratory medium. Growth curves were fitted using the model of Baranyi and Roberts, and specific growth rates deriv...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(97)00043-3

    authors: Fernández PS,George SM,Sills CC,Peck MW

    更新日期:1997-06-17 00:00:00

  • Diversity of the heterotrophic microbial populations for distinguishing natural mineral waters.

    abstract::In the recent years the consumption of natural mineral waters has risen all over the world, becoming a usual alternative for tap water and other beverages. Natural mineral waters are complex environments containing a high diversity of autochthonous microbiota. The identification and characterization of this indigenous...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2011.10.012

    authors: Casanovas-Massana A,Blanch AR

    更新日期:2012-02-01 00:00:00

  • Characterization of bacterial communities of donkey milk by high-throughput sequencing.

    abstract::The interest in donkey milk (DM) is growing because of its functional properties and nutritional value, especially for children with allergies and food intolerances. However, most of the available reports of DM microbiota are based on culture-dependent methods to investigate food safety issues and the presence of lact...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2017.03.023

    authors: Soto Del Rio MLD,Dalmasso A,Civera T,Bottero MT

    更新日期:2017-06-19 00:00:00

  • Isolation, identification and toxigenic potential of ochratoxin A-producing Aspergillus species from coffee beans grown in two regions of Thailand.

    abstract::In 2006 and 2007, 32 Thai dried coffee bean samples (Coffea arabica) from two growing sites of Chiang Mai Province, and 32 Thai dried coffee bean samples (Coffea canephora var. robusta) from two growing sites of Chumphon Province, Thailand, were collected and assessed for the distribution of fungi with the potential t...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2008.08.005

    authors: Noonim P,Mahakarnchanakul W,Nielsen KF,Frisvad JC,Samson RA

    更新日期:2008-12-10 00:00:00

  • Characterization of new bacteriocinogenic lactic acid bacteria isolated using a medium designed to simulate inhibition of Listeria by Lactobacillus sakei 2512 on meat.

    abstract::Bacteriocinogenic bacteria have been proposed to protect food products from Listeria contamination as bioprotective cultures. Lactobacillus sakei 2512 was demonstrated to inhibit the growth of Listeria on sliced cooked ham by challenge test. A liquid medium simulating ham, BHI5L200, was designed in order to select bio...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2006.07.016

    authors: Héquet A,Laffitte V,Simon L,De Sousa-Caetano D,Thomas C,Fremaux C,Berjeaud JM

    更新日期:2007-01-01 00:00:00

  • Influence of Fusarium avenaceum infections on barley malt: Monitoring changes in the albumin fraction of barley during the malting process.

    abstract::Fusarium spp. are ubiquitous field pathogens, which are known to affect quality characteristics of cereals. Infections with Fusarium pathogens in brewing cereals are problematic and augur for a poor malt quality. The negative effects of Fusarium infections are various. Besides causing agronomic losses, kernel discolor...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2018.12.026

    authors: Geißinger C,Whitehead I,Hofer K,Heß M,Habler K,Becker T,Gastl M

    更新日期:2019-03-16 00:00:00

  • Fermentative behaviour and competition capacity of cryotolerant Saccharomyces species in different nitrogen conditions.

    abstract::The selection of yeasts with low nitrogen requirement is a current need in winemaking. In this work, we analysed nitrogen requirements of strains belonging to the cryotolerant species S. uvarum, S. eubayanus and S. kudriavzevii, in order to evaluate their potential for conducting the fermentation of low nitrogen conte...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2018.11.020

    authors: Su Y,Origone AC,Rodríguez ME,Querol A,Guillamón JM,Lopes CA

    更新日期:2019-02-16 00:00:00

  • Effect of food microstructure on growth dynamics of Listeria monocytogenes in fish-based model systems.

    abstract::Traditionally, predictive growth models for food pathogens are developed based on experiments in broth media, resulting in models which do not incorporate the influence of food microstructure. The use of model systems with various microstructures is a promising concept to get more insight into the influence of food mi...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2018.05.032

    authors: Verheyen D,Bolívar A,Pérez-Rodríguez F,Baka M,Skåra T,Van Impe JF

    更新日期:2018-10-20 00:00:00

  • Effects of atmospheric conditions, NaCl and pH on growth and interactions between moulds and yeasts related to blue cheese production.

    abstract::The starter culture Penicillium roqueforti, undesired cultures Penicillium caseifulvum and Geotrichum candidum and the potential starter culture Debaryomyces hansenii were examined for their growth and interactions at environmental conditions similar to the Danish blue cheese Danablu. The combined effect of low oxygen...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(00)00263-4

    authors: van den Tempel T,Nielsen MS

    更新日期:2000-06-15 00:00:00

  • Growth kinetics of Escherichia coli O157:H7 in mechanically-tenderized beef.

    abstract::A kinetic study was conducted to investigate the growth of Escherichia coli O157:H7 in mechanically-tenderized beef meat (MTBM) inoculated and internalized with a cocktail of 5 rifampicin-resistant (Rif(r)) or 3 arbitrarily selected wild-type strains of the bacteria. The storage was conducted at 5, 10, 15, 20, 25, and...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2010.02.013

    authors: Huang L

    更新日期:2010-05-30 00:00:00

  • Co-culture fermentation of peanut-soy milk for the development of a novel functional beverage.

    abstract::Most of the commercial probiotic products are dairy-based, and the development of non-dairy probiotic products could be an alternative for new functional products. The peanut-soy milk (PSM(1)) was inoculated with six different lactic acid bacteria (LAB), including probiotic strains and yeasts and fermentation was acco...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2014.06.011

    authors: Santos CC,Libeck Bda S,Schwan RF

    更新日期:2014-09-01 00:00:00

  • Group-specific PCR-RFLP and real-time PCR methods for detection and tentative discrimination of strictly anaerobic beer-spoilage bacteria of the class Clostridia.

    abstract::The strictly anaerobic brewery contaminants of the genera Pectinatus, Megasphaera, Selenomonas and Zymophilus in the class Clostridia constitute an important group of spoilage bacteria of unpasteurised, packaged beers. The aim of this study was to develop and evaluate group-specific PCR methods to detect and different...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2008.03.042

    authors: Juvonen R,Koivula T,Haikara A

    更新日期:2008-07-15 00:00:00

  • Global transcriptional response of Escherichia coli MG1655 cells exposed to the oxygenated monoterpenes citral and carvacrol.

    abstract::DNA microarrays were used to study the mechanism of bacterial inactivation by carvacrol and citral. After 10-min treatments of Escherichia coli MG1655 cells with 100 and 50ppm of carvacrol and citral, 76 and 156 genes demonstrated significant transcriptional differences (p≤0.05), respectively. Among the up-regulated g...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2017.06.002

    authors: Chueca B,Pérez-Sáez E,Pagán R,García-Gonzalo D

    更新日期:2017-09-18 00:00:00

  • Microbiota of Minas cheese as influenced by the nisin producer Lactococcus lactis subsp. lactis GLc05.

    abstract::Minas cheese is a popular dairy product in Brazil that is traditionally produced using raw or pasteurized cow milk. This study proposed an alternative production of Minas cheese using raw goat milk added of a nisin producer Lactococcus lactis subsp. lactis GLc05. An in situ investigation was carried on to evaluate the...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2015.08.006

    authors: Perin LM,Dal Bello B,Belviso S,Zeppa G,Carvalho AF,Cocolin L,Nero LA

    更新日期:2015-12-02 00:00:00

  • Metabolism of SO₂ binding compounds by Oenococcus oeni during and after malolactic fermentation in white wine.

    abstract::Sulfur dioxide SO₂ is the key additive for the preservation of wines. Carbonyl and keto compounds in wine can bind to SO₂ and decrease its efficacy, resulting in higher total SO₂ requirements. Increased consumer demand for low sulfite and organic wines pose production challenges if SO₂ binders have not been properly m...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2012.01.025

    authors: Jackowetz JN,Mira de Orduña R

    更新日期:2012-04-16 00:00:00

  • Dynamics of biofilm formation by Listeria monocytogenes on stainless steel under mono-species and mixed-culture simulated fish processing conditions and chemical disinfection challenges.

    abstract::The progressive ability of a six-strains L. monocytogenes cocktail to form biofilm on stainless steel (SS), under fish-processing simulated conditions, was investigated, together with the biocide tolerance of the developed sessile communities. To do this, the pathogenic bacteria were left to form biofilms on SS coupon...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2017.12.020

    authors: Papaioannou E,Giaouris ED,Berillis P,Boziaris IS

    更新日期:2018-02-21 00:00:00

  • Arginine dihydrolase pathway in Lactobacillus plantarum from orange.

    abstract::Lactobacillus plantarum N8 and N4 strains isolated from orange degraded L-arginine to citrulline, ornithine and ammonia. Citrulline and ornithine were consumed. Lactobacillus plantarum N4 utilized arginine and ornithine to a higher extent than Lactobacillus plantarum N8. Urea was not detected during arginine degradati...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(99)00004-5

    authors: Arena ME,Saguir FM,Manca de Nadra MC

    更新日期:1999-03-15 00:00:00

  • Grapefruit juice and its furocoumarins inhibits autoinducer signaling and biofilm formation in bacteria.

    abstract::Cell-to-cell communications in bacteria mediated by small diffusible molecules termed as autoinducers (AI) are known to influence gene expression and pathogenicity. Oligopeptides and N-acylhomoserine lactones (AHL) are major AI molecules involved in intra-specific communication in gram-positive and gram-negative bacte...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2008.03.028

    authors: Girennavar B,Cepeda ML,Soni KA,Vikram A,Jesudhasan P,Jayaprakasha GK,Pillai SD,Patil BS

    更新日期:2008-07-15 00:00:00

  • Taxonomy and physiology of probiotic lactic acid bacteria.

    abstract::The current taxonomy of probiotic lactic acid bacteria is reviewed with special focus on the genera Lactobacillus, Bifidobacterium and Enterococcus. The physiology and taxonomic position of species and strains of these genera were investigated by phenotypic and genomic methods. In total, 176 strains, including the typ...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(98)00049-x

    authors: Klein G,Pack A,Bonaparte C,Reuter G

    更新日期:1998-05-26 00:00:00

  • Migration of Caenorhabditis elegans to manure and manure compost and potential for transport of Salmonella newport to fruits and vegetables.

    abstract::A study was done to determine if a free-living, bacterivorous nematode, Caenorhabditis elegans, migrates to bovine manure, turkey manure, composted bovine manure, composted turkey manure, and manure-amended soil inoculated with Salmonella Newport. Movement of the worm to lettuce, strawberries, and carrots was also stu...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2005.05.011

    authors: Kenney SJ,Anderson GL,Williams PL,Millner PD,Beuchat LR

    更新日期:2006-01-15 00:00:00

  • Eating oysters without risk of vibriosis: application of a bacteriophage against Vibrio parahaemolyticus in oysters.

    abstract::Vibrio parahaemolyticus is a major cause of foodborne illness and related with the consumption of raw contaminated seafood, especially oysters. To evaluate the effectiveness of various applications of a bacteriophage (phage), pVp-1, against a multiple-antibiotic-resistant V. parahaemolyticus pandemic strain (CRS 09-17...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2014.07.007

    authors: Jun JW,Kim HJ,Yun SK,Chai JY,Park SC

    更新日期:2014-10-01 00:00:00

  • Salmonella in slaughter pigs: prevalence, serotypes and critical control points during slaughter in two slaughterhouses.

    abstract::The purpose of this study was to show the distribution of Salmonella in slaughtered pigs and the environment of the slaughterhouse. 1,114 samples of slaughtered pigs (six different samples for Salmonella isolation and one serum sample for ELISA on antibodies per pig) and 477 samples of the slaughterhouse environment w...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/s0168-1605(01)00545-1

    authors: Swanenburg M,Urlings HA,Snijders JM,Keuzenkamp DA,van Knapen F

    更新日期:2001-11-08 00:00:00

  • Evaluation of molecular methods to determine enterotoxigenic status and molecular genotype of bovine, ovine, human and food isolates of Staphylococcus aureus.

    abstract::This study evaluated the use of PFGE and single enzyme AFLP techniques for the determination of the genetic relationships between Staphyloccocus aureus isolates from human, bovine, ovine and food related sources and reports the prevalence of 'classic' (sea to see) and 'new' (seg, seh, sei, sej, sem, sen and seo) staph...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2005.07.008

    authors: Boerema JA,Clemens R,Brightwell G

    更新日期:2006-03-15 00:00:00

  • Tracing isolates from domestic human Campylobacter jejuni infections to chicken slaughter batches and swimming water using whole-genome multilocus sequence typing.

    abstract::Campylobacter jejuni is the leading cause of bacterial gastroenteritis and chicken is considered a major reservoir and source of human campylobacteriosis. In this study, we investigated temporally related Finnish human (n=95), chicken (n=83) and swimming water (n=20) C. jejuni isolates collected during the seasonal pe...

    journal_title:International journal of food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.ijfoodmicro.2016.03.009

    authors: Kovanen S,Kivistö R,Llarena AK,Zhang J,Kärkkäinen UM,Tuuminen T,Uksila J,Hakkinen M,Rossi M,Hänninen ML

    更新日期:2016-06-02 00:00:00