Two tSNPs in BRIP1 are associated with breast cancer during TDT analysis.

Abstract:

OBJECTIVES:This study aimed to investigate and confirm the association between 15 single nucleotide polymorphisms of four susceptibility genes (NBS1, TP53, PTEN, and BRIP1) and the susceptibility of breast cancer. METHODS:The genome DNA was extracted from peripheral blood and tumor tissues from one hundred and seventeen core families. 15 SNPs were detected by PCR. The transmission disequilibrium test (TDT) and the Hardy-Weinberg equilibrium (HWE) are used to verify the association between these SNPs and breast cancer. Further correlation between SNPs and certain pathological features of the tumor, including tumor size, location of lymph nodes, pathologic classification, and the stage and subtype of breast cancer, are analyzed by the chi-square test and logistic regression analysis. RESULTS:Based on TDTs, two SNPs of rs7220719 and rs11871753 in BRIP1 showed a significant association with breast cancer, while the other 13 selected SNPs did not. However, further statistical analysis demonstrated no obvious differentiation in the clinical characteristics of breast cancer between 37 patients with rs7220719 and 80 patients with wild types. Similar results were also found for rs11871753. CONCLUSIONS:The data provided the evidence for the association between two SNPs of BRIP1 and breast cancer, but did not affect certain clinical phenotypes.

journal_name

Mol Genet Genomic Med

authors

Li X,Li Z,Yang M,Luo Y,Hu L,Xiao Z,Huang A,Huang J

doi

10.1002/mgg3.1578

subject

Has Abstract

pub_date

2021-01-05 00:00:00

pages

e1578

issn

2324-9269

pub_type

杂志文章
  • Two novel mutations identified in familial cases with Donohue syndrome.

    abstract::Donohue syndrome (DS) is a rare and lethal autosomal recessive disease caused by mutations in the insulin receptor (INSR) gene, manifesting marked insulin resistance, severe growth retardation, hypertrichosis, and characteristic dysmorphic features. We report the clinical, molecular, and biochemical characterization o...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.43

    authors: Falik Zaccai TC,Kalfon L,Klar A,Elisha MB,Hurvitz H,Weingarten G,Chechik E,Fleisher Sheffer V,Haj Yahya R,Meidan G,Gross-Kieselstein E,Bauman D,Hershkovitz S,Yaron Y,Orr-Urtreger A,Wertheimer E

    更新日期:2014-01-01 00:00:00

  • Panel-based targeted exome sequencing reveals novel candidate susceptibility loci for age-related cataracts in Chinese Cohort.

    abstract:BACKGROUND:Age-related cataracts (ARC) is the most common blinding eye disease worldwide, and its incidence tend to become younger. However, the relationship between genetic factors and mechanisms is not fully understood. The aim of the study was to further clarify the relationship between ARC and genetic mechanisms in...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1218

    authors: Li JK,Li LL,Li W,Wang ZW,Gao FJ,Hu FY,Zhang SH,Qu SF,Huang J,Wang LS,Wu JH,Chen F

    更新日期:2020-07-01 00:00:00

  • Effect of lifestyle and reproductive factors on the onset of breast cancer in female BRCA 1 and 2 mutation carriers.

    abstract:BACKGROUND:The birth year-dependent onset of breast cancer (BC) in BRCA1/2 mutation carriers suggests a risk-modifying role for reproductive and life style factors. We therefore examined possible associations between these factors and age at diagnosis. METHODS:Cox regression analysis and log-Rank testing were used to ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.191

    authors: Rieder V,Salama M,Glöckner L,Muhr D,Berger A,Tea MK,Pfeiler G,Rappaport-Fuerhauser C,Gschwantler-Kaulich D,Weingartshofer S,Singer CF

    更新日期:2015-12-10 00:00:00

  • Alport syndrome caused by a COL4A5 deletion and exonization of an adjacent AluY.

    abstract::Mutation-induced activation of splice sites in intronic repetitive sequences has contributed significantly to the evolution of exon-intron structure and genetic disease. Such events have been associated with mutations within transposable elements, most frequently in mutation hot-spots of Alus. Here, we report a case o...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.89

    authors: Nozu K,Iijima K,Ohtsuka Y,Fu XJ,Kaito H,Nakanishi K,Vorechovsky I

    更新日期:2014-09-01 00:00:00

  • Two novel mutations in DNAJC12 identified by whole-exome sequencing in a patient with mild hyperphenylalaninemia.

    abstract:BACKGROUND:Recently hyperphenylalaninemia (HPA) caused by variants in DNAJC12 was reported and this suggested a new strategy for diagnosis. But DNAJC12-associated HPA is a rare in Chinese population so far. METHODS:The clinical information and blood samples from the patient and his family members were collected and an...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1303

    authors: Li M,Yang Q,Yi S,Qin Z,Luo J,Fan X

    更新日期:2020-08-01 00:00:00

  • Whole exome sequencing reveals novel CEP104 mutations in a Chinese patient with Joubert syndrome.

    abstract:BACKGROUND:Joubert syndrome (JS, OMIM: 213300) is a recessive developmental disorder characterized by cerebellar vermis hypoplasia and a distinctive mid-hindbrain malformation called the "molar tooth sign" on axial magnetic resonance imaging. To date, more than 35 ciliary genes have been identified as the causative gen...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1004

    authors: Luo M,Cao L,Cao Z,Ma S,Shen Y,Yang D,Lu C,Lin Z,Liu Z,Yu Y,Cai R,Chen C,Gao H,Wang X,Cao M,Ma X

    更新日期:2019-12-01 00:00:00

  • Integrated bioinformatics analysis of key genes involved in progress of colon cancer.

    abstract:BACKGROUND:Colon cancer is one of most malignant cancers around worldwide. Nearly 20% patients were diagnosed at colon cancer with metastasis. However, the lack of understanding regarding its pathogenesis brings difficulties to study it. METHODS:In this study, we acquired high-sequence data from GEO dataset, and perfo...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.588

    authors: Yang H,Wu J,Zhang J,Yang Z,Jin W,Li Y,Jin L,Yin L,Liu H,Wang Z

    更新日期:2019-04-01 00:00:00

  • A rare gene variation cap +1 (A>C) (HBB: c. -50A>C) associated with codon 5 (-CT) (HBB: c.17_18delCT) mutation in Syrian family.

    abstract:BACKGROUND:CAP+1 [A>C] (HBB:c.-50A>C) is a rare silent β-thalassemia (β-thal) mutation. Carrier individuals of this mutation show borderline hemoglobin (Hb), mean corpuscular volume (MCV) and Hb A2 levels. This mutation was previously reported in combination with different β-thalassemia mutations, leading to variable p...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1602

    authors: Murad H,Moassas F,Fakseh NAL

    更新日期:2021-01-24 00:00:00

  • Primary congenital glaucoma due to paternal uniparental isodisomy of chromosome 2 and CYP1B1 deletion.

    abstract:BACKGROUND:CYP1B1 variants and deletions are the most common cause of primary congenital glaucoma (PCG). METHODS:We investigated an individual with PCG from the Australian and New Zealand Registry of Advanced Glaucoma. We performed sequencing of the CYP1B1 gene, followed by Multiplex Ligation-dependent Probe Amplifica...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.774

    authors: Souzeau E,Dubowsky A,Ruddle JB,Craig JE

    更新日期:2019-08-01 00:00:00

  • A rapid and reliable chromosome analysis method for products of conception using interphase nuclei.

    abstract:BACKGROUND:Karyotype determination has a central role in the genetic workup of pregnancy loss, as aneuploidy (trisomy and monosomy) and polyploidy (triploidy and tetraploidy) are the cause in at least 50% of first trimester, 25% of second trimester, and 11% of third trimester miscarriages. There are several limitations...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.381

    authors: Babu R,Van Dyke DL,Bhattacharya S,Dev VG,Liu M,Kwon M,Gu G,Koduru P,Rao N,Williamson C,Fuentes E,Fuentes S,Papa S,Kopuri S,Lal V

    更新日期:2018-05-01 00:00:00

  • BRPF1-associated intellectual disability, ptosis, and facial dysmorphism in a multiplex family.

    abstract:BACKGROUND:Over 500 epigenetic regulators have been identified throughout the human genome. Of these, approximately 30 chromatin modifiers have been implicated thus far in human disease. Recently, variants in BRPF1, encoding a chromatin reader, have been associated with a previously unrecognized autosomal dominant synd...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.665

    authors: Pode-Shakked N,Barel O,Pode-Shakked B,Eliyahu A,Singer A,Nayshool O,Kol N,Raas-Rothschild A,Pras E,Shohat M

    更新日期:2019-06-01 00:00:00

  • Genetics and genomic medicine in Argentina.

    abstract::In this letter, we want to add information to the paper "Genetics and genomic medicine in Argentina" that we considered it was lacking. Argentina is a big country with inequalities in the access to public health care, especially in medical genetics and genomics. ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 评论,信件

    doi:10.1002/mgg3.571

    authors: Cotignola J,Rozental S,Buzzalino N,Dain L

    更新日期:2019-04-01 00:00:00

  • A comprehensive assessment of Next-Generation Sequencing variants validation using a secondary technology.

    abstract:BACKGROUND:Recently, increasing innovations improved the accuracy of next generation sequencing (NGS) data. However, the validation of all NGS variants increased the cost and turn-around time of clinical diagnosis, and therefore limited the further development of clinical applications. We aimed to comprehensively asses...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.748

    authors: Zheng J,Zhang H,Banerjee S,Li Y,Zhou J,Yang Q,Tan X,Han P,Fu Q,Cui X,Yuan Y,Zhang M,Shen R,Song H,Zhang X,Zhao L,Peng Z,Wang W,Yin Y

    更新日期:2019-07-01 00:00:00

  • Osteosarcoma without prior retinoblastoma related to RB1 low-penetrance germline pathogenic variants: A novel type of RB1-related hereditary predisposition syndrome?

    abstract:BACKGROUND:Retinoblastoma (Rb) is a rare intraocular malignant tumor in children with high overall survival. Predisposition to Rb is linked to RB1 germline mutations with high penetrance, but rare RB1 low-penetrance variants are also known. Rb survivors are at risk of second primary malignancies (SPMs), mostly osteosar...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.913

    authors: Imbert-Bouteille M,Gauthier-Villars M,Leroux D,Meunier I,Aerts I,Lumbroso-Le Rouic L,Lejeune S,Delnatte C,Abadie C,Pujol P,Houdayer C,Corsini C

    更新日期:2019-12-01 00:00:00

  • Investigation on the role of biallelic variants in VEGF-C found in a patient affected by Milroy-like lymphedema.

    abstract:BACKGROUND:Milroy-like disease is the diagnostic definition used for patients with phenotypes that resemble classic Milroy disease (MD) but are negative to genetic testing for FLT4. In this study, we aimed at performing a genetic characterization and biochemical analysis of VEGF-C variations found in a female proband b...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1389

    authors: Mukenge S,Jha SK,Catena M,Manara E,Leppänen VM,Lenti E,Negrini D,Bertelli M,Brendolan A,Jeltsch M,Aldrighetti L

    更新日期:2020-09-01 00:00:00

  • A novel de novo frameshift deletion in EHMT1 in a patient with Kleefstra Syndrome results in decreased H3K9 dimethylation.

    abstract:BACKGROUND:Kleefstra Syndrome (KS) (MIM# 610253) is an autosomal dominant disorder caused by haploinsufficiency of euchromatic histone methyltransferase-1 (EHMT1, GLP). EHMT1 (MIM# 607001) encodes a histone methyltransferase that heterodimerizes with EHMT2 (also known as G9a, MIM# 604599), which together are responsibl...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.268

    authors: Blackburn PR,Williams M,Cousin MA,Boczek NJ,Beek GJ,Lomberk GA,Urrutia RA,Babovic-Vuksanovic D,Klee EW

    更新日期:2017-01-26 00:00:00

  • Two rare PROX1 variants in patients with lymphedema.

    abstract:BACKGROUND:The PROX1 gene is specifically expressed in a subpopulation of endothelial cells that, by budding and sprouting, give rise to the lymphatic system. It also plays a critical role in neurogenesis and during development of many organs, such as the eye lens, liver, and pancreas. METHODS:We used next-generation ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1424

    authors: Ricci M,Amato B,Barati S,Compagna R,Veselenyiova D,Kenanoglu S,Stuppia L,Beccari T,Baglivo M,Kurti D,Krajcovic J,Serrani R,Dundar M,Basha SH,Chiurazzi P,Bertelli M

    更新日期:2020-10-01 00:00:00

  • 14q12q13.2 microdeletion syndrome: Clinical characterization of a new patient, review of the literature, and further evidence of a candidate region for CNS anomalies.

    abstract:BACKGROUND:Chromosome 14q11-q22 deletion syndrome (OMIM 613457) is a rare contiguous gene syndrome. Two regions of overlap (RO) of the 14q12q21.1 deletion have been identified: a proximal region (RO1), including FOXG1(*164874), NKX2-1(*600635), and PAX9(*167416) and a distal region (RO2), including NKX2-1 and PAX9. We ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1289

    authors: Ponzi E,Gentile M,Agolini E,Matera E,Palumbi R,Buonadonna AL,Peschechera A,Gabellone A,Antonucci MF,Margari L

    更新日期:2020-07-01 00:00:00

  • A de novo heterozygous variant in the SON gene is associated with Zhu-Tokita-Takenouchi-Kim syndrome.

    abstract:BACKGROUND:Zhu-Tokita-Takenouchi-Kim (ZTTK, OMIM# 617140) syndrome is a rare, autosomal dominant genetic disorder caused by heterozygous variants in the SON gene (OMIM#182465, GenBank#NC_000021.9). There are only 33 cases and 26 causative SON variants reported to date since the first report in 2015. Here, we report a n...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1496

    authors: Yang L,Yang F

    更新日期:2020-11-01 00:00:00

  • A novel missense variant in MYO3A is associated with autosomal dominant high-frequency hearing loss in a German family.

    abstract:BACKGROUND:MYO3A, encoding the myosin IIIA protein, is associated with autosomal recessive and autosomal dominant nonsyndromic hearing loss. To date, only two missense variants located in the motor-head domain of MYO3A have been described in autosomal dominant families with progressive, mild-to-profound sensorineural h...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1343

    authors: Doll J,Hofrichter MAH,Bahena P,Heihoff A,Segebarth D,Müller T,Dittrich M,Haaf T,Vona B

    更新日期:2020-08-01 00:00:00

  • Identifying gene mutations of Chinese patients with polycystic kidney disease through targeted next-generation sequencing technology.

    abstract:BACKGROUND:Polycystic kidney disease (PKD) is the most common hereditary kidney disease. The main mutational genes causing autosomal dominant polycystic kidney disease (ADPKD) are PKD1 and PKD2 as well as some rare pathogenic genes. Unilateral PKD is rare in clinics, and its association with gene mutations is unclear. ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.720

    authors: Wang T,Li Q,Shang S,Geng G,Xie Y,Cai G,Chen X

    更新日期:2019-06-01 00:00:00

  • Copy number variation in the ATP-binding cassette transporter ABCC6 gene and ABCC6 pseudogenes in patients with pseudoxanthoma elasticum.

    abstract::Single mutations in the ATP-binding cassette transporter (ABCC6) gene (OMIM 603234) are known to cause the rare autosomal recessive disease pseudoxanthoma elasticum (PXE). Recently, we have found that copy number variations (CNVs) in pseudogenes of the ABCC6 gene are quite common. The aim of this study was to investig...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.137

    authors: Kringen MK,Stormo C,Berg JP,Terry SF,Vocke CM,Rizvi S,Hendig D,Piehler AP

    更新日期:2015-05-01 00:00:00

  • High frequency of the risk allele of rs4132601 and rs11978267 from the IKZF1 gene in indigenous Mexican population.

    abstract:BACKGROUND:IKZF1 is a relevant gene associated with the pathogenesis of acute lymphoblastic leukemia, and the rs4132601 (T>G) and rs11978267 (A>G) polymorphisms have been associated with the development of this disease in several populations. The aim of this study was to determine the allelic and genotypic frequencies ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1589

    authors: Gutiérrez-Franco J,Ayón-Pérez MF,Durán-Avelar MJ,Vibanco-Pérez N,Sánchez-Jasso DE,Bañuelos-Aguayo DG,Sánchez-Meza J,Pimentel-Gutiérrez HJ,Zambrano-Zaragoza JF,Agraz-Cibrián JM,Vázquez-Reyes A

    更新日期:2021-01-16 00:00:00

  • Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases.

    abstract::Point mutations in intronic regions near mRNA splice junctions can affect the splicing process. To identify novel splicing variants from exome sequencing data, we developed a bioinformatics splice-site prediction procedure to analyze next-generation sequencing (NGS) data (SpliceFinder). SpliceFinder integrates two fun...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.23

    authors: Spinelli R,Pirola A,Redaelli S,Sharma N,Raman H,Valletta S,Magistroni V,Piazza R,Gambacorti-Passerini C

    更新日期:2013-11-01 00:00:00

  • HSD10 mitochondrial disease: p.Leu122Val variant, mild clinical phenotype, and founder effect in French-Canadian patients from Quebec.

    abstract:BACKGROUND:HSD10 mitochondrial disease (HSD10MD), originally described as a deficiency of 2-methyl-3-hydroxybutyryl-CoA dehydrogenase (MHBD), is a rare X-linked disorder of a moonlighting protein encoded by the HSD17B10. The diagnosis is usually first suspected on finding elevated isoleucine degradation metabolites in ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1000

    authors: Waters PJ,Lace B,Buhas D,Gravel S,Cyr D,Boucher RM,Bernard G,Lévesque S,Maranda B

    更新日期:2019-12-01 00:00:00

  • A competing endogenous RNA network reveals key lncRNAs associated with sepsis.

    abstract:BACKGROUND:This study set out to determine key lncRNAs correlated with sepsis via constructing competing endogenous RNA (ceRNA) network. METHODS:Three septic patients and three healthy controls were recruited to obtain lncRNA profiles in this current study. Combined with the mRNA profiles by RNA-sequencing, an integra...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1557

    authors: Guo X,Qin Y,Wang L,Dong S,Yan Y,Bian X,Zhao C

    更新日期:2020-11-25 00:00:00

  • Atypical nested 22q11.2 duplications between LCR22B and LCR22D are associated with neurodevelopmental phenotypes including autism spectrum disorder with incomplete penetrance.

    abstract:BACKGROUND:Chromosome 22q11.2 is susceptible to genomic rearrangements and the most frequently reported involve deletions and duplications between low copy repeats LCR22A to LCR22D. Atypical nested deletions and duplications are rarer and can provide a valuable opportunity to investigate the dosage effects of a smaller...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.507

    authors: Woodward KJ,Stampalia J,Vanyai H,Rijhumal H,Potts K,Taylor F,Peverall J,Grumball T,Sivamoorthy S,Alinejad-Rokny H,Wray J,Whitehouse A,Nagarajan L,Scurlock J,Afchani S,Edwards M,Murch A,Beilby J,Baynam G,Kiraly-Borri

    更新日期:2019-02-01 00:00:00

  • Behavioral abnormalities are common and severe in patients with distal 22q11.2 microdeletions and microduplications.

    abstract::We describe six individuals with microdeletions and microduplications in the distal 22q11.2 region detected by microarray. Five of the abnormalities have breakpoints in the low-copy repeats (LCR) in this region and one patient has an atypical rearrangement. Two of the six patients with abnormalities in the region betw...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.146

    authors: Lindgren V,McRae A,Dineen R,Saulsberry A,Hoganson G,Schrift M

    更新日期:2015-07-01 00:00:00

  • Founder mutation in KCNJ10 in Pakistani patients with EAST syndrome.

    abstract:BACKGROUND:EAST syndrome is an autosomal recessive disorder caused by loss-of-function mutations in the gene KCNJ10. Among the 14 pathogenic mutations described so far, the p.R65P mutation stands out as the most frequent one and is particularly associated with patients of Pakistani origin. As a result we aimed to estab...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.227

    authors: Abdelhadi O,Iancu D,Tekman M,Stanescu H,Bockenhauer D,Kleta R

    更新日期:2016-06-07 00:00:00

  • Severe achondroplasia due to two de novo variants in the transmembrane domain of FGFR3 on the same allele: A case report.

    abstract:BACKGROUND:Achondroplasia (ACH), the most common form of short-limbed skeletal dysplasia, is caused by gain-of-function mutations in the fibroblast growth factor receptor 3 (FGFR3) gene. More than 97% of patients result from a heterozygous p.G380R mutation in the FGFR3 gene. We present here a child who had two de novo ...

    journal_title:Molecular genetics & genomic medicine

    pub_type: 杂志文章

    doi:10.1002/mgg3.1148

    authors: Nagata T,Matsushita M,Mishima K,Kamiya Y,Kato K,Toyama M,Ogi T,Ishiguro N,Kitoh H

    更新日期:2020-03-01 00:00:00