Whole exome sequencing in a patient with uniparental disomy of chromosome 2 and a complex phenotype.

Abstract:

:Whole exome sequencing and chromosomal microarrays are two powerful technologies that have transformed the ability of researchers to search for potentially causal variants in human disease. This study combines these tools to search for causal variants in a patient found to have maternal uniparental isodisomy of chromosome 2. This subject has a complex phenotype including skeletal and renal dysplasia, immune deficiencies, growth failure, retinal degeneration and ovarian insufficiency. Eighteen non-synonymous, rare homozygous variants were identified on chromosome 2. Additionally, five genes with compound heterozygous mutations were detected on other chromosomes that could lead to a disease phenotype independent of the uniparental disomy found in this case. Several candidate genes with potential connection to the phenotype are described but none are definitively proven to be causal. This study highlights the potential for detection of a large number of candidate genes using whole exome sequencing complicating interpretation in both the research and clinical settings. Forums must be created for publication and sharing of detailed phenotypic and genotypic reports to facilitate further biological discoveries and clinical counseling.

journal_name

Clin Genet

journal_title

Clinical genetics

authors

Carmichael H,Shen Y,Nguyen TT,Hirschhorn JN,Dauber A

doi

10.1111/cge.12064

subject

Has Abstract

pub_date

2013-09-01 00:00:00

pages

213-22

issue

3

eissn

0009-9163

issn

1399-0004

journal_volume

84

pub_type

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