Cancer Variant Interpretation Group UK (CanVIG-UK): an exemplar national subspecialty multidisciplinary network.

Abstract:

:Advances in technology have led to a massive expansion in the capacity for genomic analysis, with a commensurate fall in costs. The clinical indications for genomic testing have evolved markedly; the volume of clinical sequencing has increased dramatically; and the range of clinical professionals involved in the process has broadened. There is general acceptance that our early dichotomous paradigms of variants being pathogenic-high risk and benign-no risk are overly simplistic. There is increasing recognition that the clinical interpretation of genomic data requires significant expertise in disease-gene-variant associations specific to each disease area. Inaccurate interpretation can lead to clinical mismanagement, inconsistent information within families and misdirection of resources. It is for this reason that 'national subspecialist multidisciplinary meetings' (MDMs) for genomic interpretation have been articulated as key for the new NHS Genomic Medicine Service, of which Cancer Variant Interpretation Group UK (CanVIG-UK) is an early exemplar. CanVIG-UK was established in 2017 and now has >100 UK members, including at least one clinical diagnostic scientist and one clinical cancer geneticist from each of the 25 regional molecular genetics laboratories of the UK and Ireland. Through CanVIG-UK, we have established national consensus around variant interpretation for cancer susceptibility genes via monthly national teleconferenced MDMs and collaborative data sharing using a secure online portal. We describe here the activities of CanVIG-UK, including exemplar outputs and feedback from the membership.

journal_name

J Med Genet

authors

Garrett A,Callaway A,Durkie M,Cubuk C,Alikian M,Burghel GJ,Robinson R,Izatt L,Talukdar S,Side L,Cranston T,Palmer-Smith S,Baralle D,Berry IR,Drummond J,Wallace AJ,Norbury G,Eccles DM,Ellard S,Lalloo F,Evans DG,W

doi

10.1136/jmedgenet-2019-106759

subject

Has Abstract

pub_date

2020-12-01 00:00:00

pages

829-834

issue

12

eissn

0022-2593

issn

1468-6244

pii

jmedgenet-2019-106759

journal_volume

57

pub_type

杂志文章
  • Mitochondrial DNA haplogroups and type 2 diabetes: a study of 897 cases and 1010 controls.

    abstract::Mitochondria play a central role in the secretion of insulin by pancreatic beta-cells, and pathogenic mutations of mitochondrial DNA (mtDNA) can cause diabetes. The aetiology of type 2 diabetes has a strong genetic component, raising the possibility that genetic variants of mtDNA alter the risk of developing the disor...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2007.048876

    authors: Chinnery PF,Mowbray C,Patel SK,Elson JL,Sampson M,Hitman GA,McCarthy MI,Hattersley AT,Walker M

    更新日期:2007-06-01 00:00:00

  • The genetic status of mothers of isolated cases of Duchenne muscular dystrophy.

    abstract::Classical genetic theory, based on assumed equal mutation rates in males and females, predicts that one-third of all cases of Duchenne muscular dystrophy (DMD) in a generation are born as new mutants to non-carrier mothers. Furthermore, less than half the mothers of apparently isolated cases appear to be carriers on t...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.20.1.1

    authors: Lane RJ,Robinow M,Roses AD

    更新日期:1983-02-01 00:00:00

  • Epidermal mosaicism and Blaschko's lines.

    abstract::To test the hypothesis that epidermal rather than dermal mosaicism determines Blaschko's lines in hypomelanosis of Ito (HI), we studied the distribution of chromosomal mosaicism in four patients. In two, mosaicism had not been detected in lymphocytes or dermal fibroblasts, but was clearly shown in epidermal keratinocy...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.30.9.752

    authors: Moss C,Larkins S,Stacey M,Blight A,Farndon PA,Davison EV

    更新日期:1993-09-01 00:00:00

  • Costello syndrome.

    abstract::Costello syndrome is characterised by postnatal growth deficiency, coarse facies, redundant skin on the neck, palms, soles, and fingers, dark skin, acanthosis nigricans, and papillomata. The natural history evolves in two phases, a severe failure to thrive during the first months contrasting with a normal weight gain ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmg.35.3.238

    authors: Philip N,Sigaudy S

    更新日期:1998-03-01 00:00:00

  • The genetic landscape and clinical implications of vertebral anomalies in VACTERL association.

    abstract::VACTERL association is a condition comprising multisystem congenital malformations, causing severe physical disability in affected individuals. It is typically defined by the concurrence of at least three of the following component features: vertebral anomalies (V), anal atresia (A), cardiac malformations (C), tracheo...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmedgenet-2015-103554

    authors: Chen Y,Liu Z,Chen J,Zuo Y,Liu S,Chen W,Liu G,Qiu G,Giampietro PF,Wu N,Wu Z

    更新日期:2016-07-01 00:00:00

  • De novo paracentric inversion in an X chromosome.

    abstract::A 10 1/2 year old female with skeletal abnormalities was referred for genetic consultation because of learning disabilities and a suggestion of 'Turner-like' stigmata. Cytogenetic analysis revealed a paracentric inversion of an X(q13.1q26.1) chromosome. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.22.2.140

    authors: Herr HM,Horton SJ,Scott CI Jr

    更新日期:1985-04-01 00:00:00

  • Sweat testing to identify female carriers of X linked hypohidrotic ectodermal dysplasia.

    abstract::X linked hypohidrotic ectodermal dysplasia (XHED) affects many epithelial functions, including sweat gland formation. Female carriers who manifest XHED may have defective dentition or a patchy distribution of sweating or both, as determined by starch and iodine sweat testing. Such sweat testing can be useful in assign...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.28.5.330

    authors: Clarke A,Burn J

    更新日期:1991-05-01 00:00:00

  • Neuropsychological characteristics of Huntington's disease carriers: a double blind study.

    abstract::A cohort of 33 people at risk for Huntington's disease (HD), applying for genetic testing, were tested with a battery of neuropsychological tests covering attentional, visuospatial, learning, memory, and planning functions. A psychiatric rating scale, SCL-90R, was also applied, mainly as a control, since cognitive dys...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.32.8.600

    authors: Rosenberg NK,Sørensen SA,Christensen AL

    更新日期:1995-08-01 00:00:00

  • Cohen syndrome diagnosis using whole genome arrays.

    abstract:BACKGROUND:Cohen syndrome is a rare autosomal recessive disorder with a complex phenotype including psychomotor retardation, microcephaly, obesity with slender extremities, joint laxity, progressive chorioretinal dystrophy/myopia, intermittent isolated neutropenia, a cheerful disposition, and characteristic facial feat...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2010.082206

    authors: Rivera-Brugués N,Albrecht B,Wieczorek D,Schmidt H,Keller T,Göhring I,Ekici AB,Tzschach A,Garshasbi M,Franke K,Klopp N,Wichmann HE,Meitinger T,Strom TM,Hempel M

    更新日期:2011-02-01 00:00:00

  • Positional mapping of PRKD1, NRP1 and PRDM1 as novel candidate disease genes in truncus arteriosus.

    abstract:BACKGROUND:Truncus arteriosus (TA) is characterised by failure of septation of the outflow tract into aortic and pulmonary trunks and is associated with high morbidity and mortality. Although ranked among the least common congenital heart defects, TA provides an excellent model for the role of individual genes in cardi...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2015-102992

    authors: Shaheen R,Al Hashem A,Alghamdi MH,Seidahmad MZ,Wakil SM,Dagriri K,Keavney B,Goodship J,Alyousif S,Al-Habshan FM,Alhussein K,Almoisheer A,Ibrahim N,Alkuraya FS

    更新日期:2015-05-01 00:00:00

  • Paternal uniparental disomy of chromosome 19 in a pair of monochorionic diamniotic twins with dysmorphic features and developmental delay.

    abstract:BACKGROUND:We report here clinical, cytogenetic and molecular data for a pair of monochorionic diamniotic twins with paternal isodisomy for chromosome 19. Both twins presented with dysmorphic features and global developmental delay. This represents, to our knowledge, the first individual human case of paternal uniparen...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2018-105328

    authors: Yeung KS,Ho MSP,Lee SL,Kan ASY,Chan KYK,Tang MHY,Mak CCY,Leung GKC,So PL,Pfundt R,Marshall CR,Scherer SW,Choufani S,Weksberg R,Hon-Yin Chung B

    更新日期:2018-12-01 00:00:00

  • Complete absence of external genitalia in limb-body wall complex: two cases.

    abstract::Two neonates with limb-body wall complex (LBWC) and complete absence of the external genitalia are presented. Our patients are the sixth and seventh cases of complete absence of the external genitalia recorded in English publications and the first two cases associated with LBWC. The incidence of complete absence of th...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmg.25.5.340

    authors: Litwin A,Merlob P,Grunebaum M

    更新日期:1988-05-01 00:00:00

  • The sex ratio in anencephaly.

    abstract::A review of the data supports the suggestion of Knox (1974) that the sex ratio and incidence of anencephalics vary together within populations, as they are known to do between populations. There seems some doubts, though, whether Knox was correct in hypothesising that the sex ratio of anencephalics varies with their i...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.16.2.129

    authors: James WH

    更新日期:1979-04-01 00:00:00

  • Cowden syndrome and Bannayan Riley Ruvalcaba syndrome represent one condition with variable expression and age-related penetrance: results of a clinical study of PTEN mutation carriers.

    abstract:BACKGROUND:The most commonly reported phenotypes described in patients with PTEN mutations are Bannayan-Riley-Ruvalcaba syndrome (BRRS), with childhood onset, macrocephaly, lipomas and developmental delay, and Cowden Syndrome (CS), an adult-onset condition recognised by mucocutaneous signs, with a risk of cancers, in p...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2007.049981

    authors: Lachlan KL,Lucassen AM,Bunyan D,Temple IK

    更新日期:2007-09-01 00:00:00

  • Three sisters with gonadoblastoma.

    abstract::Three sisters with gonadoblastoma and an 46,XY karyotype are presented. This observation suggests that heredity may play an important role in the genesis of the tumour. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.14.3.194

    authors: Ionescu B,Maximilian C

    更新日期:1977-06-01 00:00:00

  • Pycnodysostosis.

    abstract::The first Scottish family with pycnodysostosis is reported. The clinical and radiological findings in the two affected men are recorded. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.25.8.550

    authors: Mills KL,Johnston AW

    更新日期:1988-08-01 00:00:00

  • Neural tube defects: a survey of lesion descriptions made by different European pathologists.

    abstract::Recent epidemiological interest has focused on separation of neural tube defects (NTD) into subgroups which may differ pathogenetically and aetiologically, for example, 'upper' and 'lower' spina bifida. In order to validate the use of pathologists' lesion descriptions by epidemiologists and others, a postal survey of ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.30.11.942

    authors: Dolk H,Seller MJ

    更新日期:1993-11-01 00:00:00

  • Molecular and clinical analyses of two patients with UPD(16)mat detected by screening 94 patients with Silver-Russell syndrome phenotype of unknown aetiology.

    abstract:BACKGROUND:Recently, a patient with maternal uniparental disomy of chromosome 16 (UPD(16)mat) presenting with Silver-Russell syndrome (SRS) phenotype was reported. SRS is characterised by growth failure and dysmorphic features. OBJECTIVE:To clarify the prevalence of UPD(16)mat in aetiology-unknown patients with SRS ph...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2018-105463

    authors: Inoue T,Yagasaki H,Nishioka J,Nakamura A,Matsubara K,Narumi S,Nakabayashi K,Yamazawa K,Fuke T,Oka A,Ogata T,Fukami M,Kagami M

    更新日期:2019-06-01 00:00:00

  • Linkage investigation of three putative tuberous sclerosis determining loci on chromosomes 9q, 11q, and 12q. The Tuberous Sclerosis Collaborative Group.

    abstract::Previous linkage studies in tuberous sclerosis have implicated three disease determining loci at 9q, 11q, and 12q. We have collated phenotypic and genotypic data on 1622 members of 128 families with tuberous sclerosis in order to evaluate simultaneously the evidence for these putative loci. Affection status in the fam...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.29.12.861

    authors: Sampson JR,Janssen LA,Sandkuijl LA

    更新日期:1992-12-01 00:00:00

  • Impaired male sex development in an infant with molecularly defined partial 9p monosomy: implication for a testis forming gene(s) on 9p.

    abstract::This paper describes a genetically male infant with impaired male sex development and partial 9p monosomy. The external genitalia were ambiguous with microphallus (penile length at birth 10 mm, mean age matched normal length 29 mm (SD 5)), hypospadias, and hypoplastic scrotum. The tests were undescended and severely h...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.4.331

    authors: Ogata T,Muroya K,Matsuo N,Hata J,Fukushima Y,Suzuki Y

    更新日期:1997-04-01 00:00:00

  • Frequency of the G6PD nt 1311 C/T polymorphism in English and Iranian populations: relevance to studies of X chromosome inactivation.

    abstract::X chromosome inactivation is widely studied using DNA sequence polymorphisms and DNA methylation as a surrogate measure of inactivation, but the correlation of methylation with inactivation is not perfect. Thus, it may be better to study sequence polymorphisms expressed in the mRNA. A recent paper reported use of a si...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.12.1028

    authors: Mortazavi Y,Chopra R,Gordon-Smith EC,Rutherford TR

    更新日期:1997-12-01 00:00:00

  • Abnormal expression of the KLF8 (ZNF741) gene in a female patient with an X;autosome translocation t(X;21)(p11.2;q22.3) and non-syndromic mental retardation.

    abstract::Non-syndromic X linked mental retardation (MRX) is a heterogeneous group of conditions in which all patients have mental retardation as the only constant phenotypic feature. We have identified a female patient with mental retardation and a balanced translocation involving chromosomes X and 21, t(X;21)(p11.2;q22.3). Ph...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.39.2.113

    authors: Lossi AM,Laugier-Anfossi F,Depetris D,Gecz J,Gedeon A,Kooy F,Schwartz C,Mattei MG,Croquette MF,Villard L

    更新日期:2002-02-01 00:00:00

  • Oguchi disease: suggestion of linkage to markers on chromosome 2q.

    abstract::Oguchi disease is a rare autosomal recessive form of congenital stationary night blindness. The condition is associated with fundus discolouration and abnormally slow dark adaptation. Earlier studies suggested that the 48 kD protein S antigen may be involved in the recovery phase of light transduction. Previous cytoge...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.32.5.396

    authors: Maw MA,John S,Jablonka S,Müller B,Kumaramanickavel G,Oehlmann R,Denton MJ,Gal A

    更新日期:1995-05-01 00:00:00

  • Novel LMNA mutations cause an aggressive atypical neonatal progeria without progerin accumulation.

    abstract:BACKGROUND:Progeroid syndromes are genetic disorders that recapitulate some phenotypes of physiological ageing. Classical progerias, such as Hutchinson-Gilford progeria syndrome (HGPS), are generally caused by mutations in LMNA leading to accumulation of the toxic protein progerin and consequently, to nuclear envelope ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2015-103695

    authors: Soria-Valles C,Carrero D,Gabau E,Velasco G,Quesada V,Bárcena C,Moens M,Fieggen K,Möhrcken S,Owens M,Puente DA,Asensio Ó,Loeys B,Pérez A,Benoit V,Wuyts W,Lévy N,Hennekam RC,De Sandre-Giovannoli A,López-Otín C

    更新日期:2016-11-01 00:00:00

  • Pathogenic variants in TNRC6B cause a genetic disorder characterised by developmental delay/intellectual disability and a spectrum of neurobehavioural phenotypes including autism and ADHD.

    abstract:BACKGROUND:Rare variants in hundreds of genes have been implicated in developmental delay (DD), intellectual disability (ID) and neurobehavioural phenotypes. TNRC6B encodes a protein important for RNA silencing. Heterozygous truncating variants have been reported in three patients from large cohorts with autism, but no...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2019-106470

    authors: Granadillo JL,P A Stegmann A,Guo H,Xia K,Angle B,Bontempo K,Ranells JD,Newkirk P,Costin C,Viront J,Stumpel CT,Sinnema M,Panis B,Pfundt R,Krapels IPC,Klaassens M,Nicolai J,Li J,Jiang Y,Marco E,Canton A,Latronico

    更新日期:2020-10-01 00:00:00

  • Misleading linkage results in an NF2 presymptomatic test owing to mosaicism.

    abstract::A two generation family with neurofibromatosis type 2 (NF2) is presented in which a family member requested presymptomatic molecular diagnosis. Since the consultand's mother had clinically well defined NF2, he was quoted to be at 50% risk of carrying an NF2 mutation. Mutation screening in the mother did not show the c...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.11.934

    authors: Bijlsma EK,Wallace AJ,Evans DG

    更新日期:1997-11-01 00:00:00

  • Melanocortin-1 receptor gene variants affect pain and mu-opioid analgesia in mice and humans.

    abstract:BACKGROUND:A recent genetic study in mice and humans revealed the modulatory effect of MC1R (melanocortin-1 receptor) gene variants on kappa-opioid receptor mediated analgesia. It is unclear whether this gene affects basal pain sensitivity or the efficacy of analgesics acting at the more clinically relevant mu-opioid r...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2004.027698

    authors: Mogil JS,Ritchie J,Smith SB,Strasburg K,Kaplan L,Wallace MR,Romberg RR,Bijl H,Sarton EY,Fillingim RB,Dahan A

    更新日期:2005-07-01 00:00:00

  • A study of retinitis pigmentosa in the City of Birmingham. II Clinical and genetic heterogeneity.

    abstract::This is a study of 138 index patients with retinitis pigmentosa (RP) and their families, in which the selection of index patients was solely on the basis of their residence in Birmingham. Clinical analysis showed that severe disease was as likely to indicate dominant or non-genetic RP as to indicate recessive disease,...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.21.6.421

    authors: Bundey S,Crews SJ

    更新日期:1984-12-01 00:00:00

  • Familial X-linked mental retardation with an X chromosome abnormality.

    abstract::An X-linked pattern of transmission observed in four families with familial mental retardation in several generations was associated with a probable secondary constriction at the distal end of the q arms of the X chromosome. Twenty retarded males and no retarded females were observed. All available live retarded males...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.14.1.46

    authors: Harvey J,Judge C,Wiener S

    更新日期:1977-02-01 00:00:00

  • Mutation screening of MSH2 and MLH1 mRNA in hereditary non-polyposis colon cancer syndrome.

    abstract::Germline mutations in four human mismatch repair genes (MSH2, MLH1, PMS1, and PMS2) have been reported to cause hereditary non-polyposis colon cancer syndrome (HNPCC). The identification of germline mutations in HNPCC kindreds allows precise diagnosis and accurate predictive testing. To investigate further the genetic...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.33.9.726

    authors: Froggatt NJ,Brassett C,Koch DJ,Evans DG,Hodgson SV,Ponder BA,Maher ER

    更新日期:1996-09-01 00:00:00