A Critical Review of Validation, Blind Testing, and Real- World Use of Alchemical Protein-Ligand Binding Free Energy Calculations.

Abstract:

:Protein-ligand binding is among the most fundamental phenomena underlying all molecular biology, and a greater ability to more accurately and robustly predict the binding free energy of a small molecule ligand for its cognate protein is expected to have vast consequences for improving the efficiency of pharmaceutical drug discovery. We briefly reviewed a number of scientific and technical advances that have enabled alchemical free energy calculations to recently emerge as a preferred approach, and critically considered proper validation and effective use of these techniques. In particular, we characterized a selection bias effect which may be important in prospective free energy calculations, and introduced a strategy to improve the accuracy of the free energy predictions.

journal_name

Curr Top Med Chem

authors

Abel R,Wang L,Mobley DL,Friesner RA

doi

10.2174/1568026617666170414142131

subject

Has Abstract

pub_date

2017-01-01 00:00:00

pages

2577-2585

issue

23

eissn

1568-0266

issn

1873-4294

pii

CTMC-EPUB-82828

journal_volume

17

pub_type

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