Abstract:
BACKGROUND:Orofacial cleft (OFC) is the most prevalent craniofacial birth defect. Genes involved in one-carbon, folate and vitamin B12 metabolisms have been associated with OFC but no study performed a concomitant assessment on genes involved in these three pathways. OBJECTIVE:We looked for potential genetic variants associated with OFC using an exhaustive gene panel of one-carbon metabolism. METHODS:We performed a case-control discovery study on children with OFC (236 cases, 145 controls) and their related mothers (186 cases, 127 controls). We performed a replication study on the top significant genetic variant in an independent group from Belgium (248 cases, 225 controls). RESULTS:In the discovery study on 'mothers', the CBS locus reached array-wide significance (p=9.13×10-6; Bonferroni p=4.77×10-3; OR 0.47 (0.33 to 0.66)) among the 519 haplotypes tested for their association with OFC risk. Within the CBS haplotype block (rs2124459, rs6586282, rs4920037, rs234705, rs234709), the rs2124459 was the most significantly associated with a reduced risk of OFC (p=1.77×10-4; Bonferroni p=2.00×10-2; OR 0.53 (0.38 to 0.74), minor allele). The rs2124459 was associated with a reduced risk of cleft palate (CP) (p=6.78×10-5; Bonferroni p=7.80×10-3; OR 0.40 (0.25 to 0.63)). In the 'children' group, the rs2124459 was associated with a reduced risk of CP (p=0.02; OR 0.61 (0.40 to 0.93), minor allele). The association between rs2124459 and reduced risk of CP was replicated in an independent children population from Belgium (p=0.02; OR 0.64 (0.44 to 0.93), minor allele). CONCLUSIONS:The CBS rs2124459 was associated with a reduced risk of CP in both French and Belgian populations. These results highlight the prominent involvement of the vitamin B6-dependent transsulfuration pathway of homocysteine in OFC risk and the interest for evaluating vitamin B6 status in further population studies.
journal_name
J Med Genetjournal_title
Journal of medical geneticsauthors
Goffinet L,Oussalah A,Guéant-Rodriguez RM,Chery C,Basha M,Avogbe PH,Josse T,Jeannesson E,Rouyer P,Flayac J,Gerard P,Le Touze A,Bonin-Goga B,Goga D,Simon E,Feillet F,Vikkula M,Guéant JLdoi
10.1136/jmedgenet-2016-104111subject
Has Abstractpub_date
2016-12-01 00:00:00pages
828-834issue
12eissn
0022-2593issn
1468-6244pii
jmedgenet-2016-104111journal_volume
53pub_type
杂志文章abstract:BACKGROUND:Clefts of the lip and palate are common birth defects, affecting approximately 1 in 700 births worldwide. The aetiology of clefting is complex, with multiple genetic and environmental influences. METHODS:Genotype based linkage disequilibrium analysis was conducted using the family based association test (FB...
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journal_title:Journal of medical genetics
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pub_type: 杂志文章,多中心研究
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doi:10.1136/jmg.2008.057950
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更新日期:1975-03-01 00:00:00
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pub_type: 杂志文章,评审
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更新日期:1999-10-01 00:00:00
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doi:10.1136/jmedgenet-2015-103695
更新日期:2016-11-01 00:00:00
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更新日期:1993-04-01 00:00:00
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abstract::A family of male limited gonadotrophin independent precocious puberty was examined for activating mutation of the LH receptor. A transition of A to G in nucleotide 1733 of the human LH receptor gene was identified in all affected males and in an unaffected carrier female. The mutation was shown by identifying a new re...
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更新日期:1981-06-01 00:00:00
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更新日期:1992-06-01 00:00:00
abstract::We have previously mapped autosomal dominant spinocerebellar ataxia (SCA) 16 to 3p26, overlapping with the locus of SCA15. Recently, partial deletions of ITPR1 and the neighbouring SUMF1 in the SCA15 and two additional families were reported. In the present study we determined the copy number of these genes by real ti...
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journal_title:Journal of medical genetics
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doi:
更新日期:1999-02-01 00:00:00
abstract::A girl with mild geroderma osteodysplastica is reported in order to raise the profile of this autosomal recessive condition which may be underdiagnosed. The important signs of this syndrome include a droopy, jowly face with a degree of malar hypoplasia and mandibular prognathism, lax, but non-hyperelastic skin, most m...
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