Evolutionary trends in the distylous genus Pulmonaria (Boraginaceae): Evidence of ancient hybridization and current interspecific gene flow.

Abstract:

:The distylous genus Pulmonaria contains approximately 18 species that are widely distributed across Eurasia. Previous studies have shown that species delimitation in the genus is problematic, but have not yet explored the evolutionary history of the genus. Premating reproductive barriers between European species appear to be weak, as several species have strongly overlapping distribution areas, flower at the same time and share the same pollinators, suggesting that hybridization may have contributed to the evolutionary history of Pulmonaria. To test this hypothesis, phylogenetic analyses of nuclear ITS and plastid data (rps16, trnH-psbA, rpl16) from 48 allopatric and four sympatric populations were performed to (1) provide a molecular phylogeny for nine of the most common Pulmonaria species in Europe, (2) detect current and ancient hybridization events, and (3) assess the contribution of hybridization versus incomplete lineage sorting to the inferred phylogenetic patterns. Our results showed that gene trees displayed widespread, strongly supported incongruence associated with the conflicting position of hybrid samples rather than incomplete lineage sorting. Evidence was found of different degrees of hybridization, ranging from current interspecific gene flow at secondary contact zones to introgression at the population level and at least one event of hybrid speciation. Overall, these results suggest that hybridization and introgression were - and could still be - important processes affecting speciation in the genus Pulmonaria.

journal_name

Mol Phylogenet Evol

authors

Meeus S,Janssens S,Helsen K,Jacquemyn H

doi

10.1016/j.ympev.2015.11.022

subject

Has Abstract

pub_date

2016-05-01 00:00:00

pages

63-73

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(15)00378-4

journal_volume

98

pub_type

杂志文章
  • Phylogeny and biogeography of the Poecilia sphenops species complex (Actinopterygii, Poeciliidae) in Central America.

    abstract::We inferred the phylogenetic relationships among members of the Poecilia sphenops species complex to resolve the colonization process and radiation of this group in Central America. We analyzed 2550 base pairs (bp) of mitochondrial DNA (mtDNA), including ATP synthase 6 and 8, cytochrome oxidase subunit I and NADH dehy...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.12.012

    authors: Alda F,Reina RG,Doadrio I,Bermingham E

    更新日期:2013-03-01 00:00:00

  • Evolutionary history of Stratiomyidae (Insecta: Diptera): the molecular phylogeny of a diverse family of flies.

    abstract::Stratiomyidae is a cosmopolitan family of Brachycera (Diptera) that contains over 2800 species. This study focused on the relationships of members of the subfamily Clitellariinae, which has had a complicated taxonomic history. To investigate the monophyly of the Clitellariinae, the relationships of its genera, and the...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.09.006

    authors: Brammer CA,von Dohlen CD

    更新日期:2007-05-01 00:00:00

  • RPB2 gene phylogeny in flowering plants, with particular emphasis on asterids.

    abstract::Two, apparently functional, paralogues of the RPB2 gene, which encodes the second largest subunit of RNA polymerase II, are shown to be present in two major groups of asterid plants. Although all other land plants surveyed so far have been found to have only one of these two copies, the RPB2 gene phylogeny inferred fr...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.01.014

    authors: Oxelman B,Yoshikawa N,McConaughy BL,Luo J,Denton AL,Hall BD

    更新日期:2004-08-01 00:00:00

  • Phylogeny and diversification of mountain vipers (Montivipera, Nilson et al., 2001) triggered by multiple Plio-Pleistocene refugia and high-mountain topography in the Near and Middle East.

    abstract::The Near and Middle East is a hotspot of biodiversity, but the region remains underexplored at the level of genetic biodiversity. Here, we present an extensive molecular phylogeny of the viperid snake genus Montivipera, including all known taxa. Based on nuclear and mitochondrial data, we present novel insights into t...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.04.025

    authors: Stümpel N,Rajabizadeh M,Avcı A,Wüster W,Joger U

    更新日期:2016-08-01 00:00:00

  • Molecular phylogeny of land and freshwater planarians (Tricladida, Platyhelminthes): from freshwater to land and back.

    abstract::The suborder Tricladida (phylum Platyhelminthes) comprises the well-known free-living flatworms, taxonomically grouped into three infraorders according to their ecology: Maricola (marine planarians), Paludicola (freshwater planarians), and Terricola (land planarians). Molecular analyses have demonstrated that the Palu...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.01.032

    authors: Alvarez-Presas M,Baguñà J,Riutort M

    更新日期:2008-05-01 00:00:00

  • Molecular phylogenetic analysis of methylenetetrahydrofolate reductase family of proteins.

    abstract::Methylenetetrahydrofolate reductase (MTHFR) family of proteins catalyze the conversion of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate. They contain a flavin adenine dinucleotide (FAD) as the cofactor and the enzyme in eukaryotes, except in yeast, is known to be allosterically regulated by S-adenosylmeth...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.09.020

    authors: Kasap M,Sazci A,Ergul E,Akpinar G

    更新日期:2007-03-01 00:00:00

  • Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae).

    abstract::Angiosperm mitochondrial horizontal gene transfer (HGT) has been widely reported during the past decades. With a few exceptions, foreign sequences are mitochondrial genes or intronic regions from other plants, indicating that HGT has played a major role in shaping mitochondrial genome evolution. Host-parasite relation...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.12.006

    authors: Sanchez-Puerta MV,Edera A,Gandini CL,Williams AV,Howell KA,Nevill PG,Small I

    更新日期:2019-03-01 00:00:00

  • Phylogenetic relationship of silkmoths inferred from sequence data of the arylphorin gene.

    abstract::A portion of the arylphorin gene from 11 silkmoth species belonging to the families Saturniidae and Bombycidae was amplified by a polymerase chain reaction. Approximately 460 bp corresponding to the third exon, the third intron, and the fourth exon were successfully amplified, sequenced, and compared. Sequences corres...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1995.1021

    authors: Shimada T,Kurimoto Y,Kobayashi M

    更新日期:1995-09-01 00:00:00

  • Does dispersal across an aquatic geographic barrier obscure phylogeographic structure in the diamond-backed watersnake (Nerodia rhombifer)?

    abstract::The impact of barriers to dispersal and gene flow is often inferred to be the primary cause of lineage divergence and phylogeographic structure in terrestrial organisms. In particular, the Mississippi River has been implicated as a barrier to gene flow in many species, including aquatic taxa. However, if barriers are ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.07.015

    authors: Brandley MC,Guiher TJ,Pyron RA,Winne CT,Burbrink FT

    更新日期:2010-11-01 00:00:00

  • Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae).

    abstract::We present here a combined mitogenome gene order dataset totalling 62% of the known genera of East Asian potamiscine freshwater crabs that includes first-time mitogenome data for 14 species and gene order data from 37 other species of potamiscines. A surprisingly high number of mitogenome gene order rearrangements wer...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.106669

    authors: Zhang Z,Xing Y,Cheng J,Pan D,Lv L,Cumberlidge N,Sun H

    更新日期:2020-02-01 00:00:00

  • The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach.

    abstract::Barcoding is an initiative to define a standard fragment of DNA to be used to assign sequences of unknown origin to existing known species whose sequences are recorded in databases. This is a difficult task when species are closely related and individuals of these species might have more than one origin. Using a previ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.07.033

    authors: Lou M,Golding GB

    更新日期:2012-11-01 00:00:00

  • A very short, functionally constrained sequence diagnoses cone snails in several Conasprella clades.

    abstract::The traditional taxonomy of ca. 700 cone snails assigns all species to a single genus, Conus Linnaeus 1758. However, an increasing body of evidence suggests that some belong to a phylogenetically distinct clade that is sometimes referred to as Conasprella. Previous work (Kraus et al., 2011) showed that a short (259 bp...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.06.014

    authors: Kraus NJ,Watkins M,Bandyopadhyay PK,Seger J,Olivera BM,Corneli PS

    更新日期:2012-10-01 00:00:00

  • Band-cutting no more: A method for the isolation and purification of target PCR bands from multiplex PCR products using new technology.

    abstract::A procedure for the isolation of target PCR bands from multiplex PCR products using the E-Gel iBase Power System, an E-Gel Safe Imager Real-Time Transilluminator, and E-Gel CloneWell 0.8% SYBR Safe agarose cassettes is presented. The collected isolates are suitable for direct use in sequencing reactions without need o...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.05.005

    authors: Gibson JF,Kelso S,Skevington JH

    更新日期:2010-09-01 00:00:00

  • Surviving the Messinian Salinity Crisis? Divergence patterns in the genus Dendropoma (Gastropoda: Vermetidae) in the Mediterranean Sea.

    abstract::Four genetically distinct clades were recently described under the name Dendropoma petraeum, a Mediterranean endemic vermetid gastropod. The aim of this work is to date the processes that drove to the diversification within this taxon and to relate them to the corresponding historical events occurred in the Mediterran...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.05.004

    authors: Calvo M,Alda F,Oliverio M,Templado J,Machordom A

    更新日期:2015-10-01 00:00:00

  • Raising names from the dead: A time-calibrated phylogeny of frog shells (Bursidae, Tonnoidea, Gastropoda) using mitogenomic data.

    abstract::With 59 Recent species, Bursidae, known as «frog shells», are a small but widely distributed group of tropical and subtropical gastropods that are most diverse in the Indo-West Pacific. The present study is aimed at reconstructing phylogenetic relationships of bursid gastropods based on extensive and representative ta...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.107040

    authors: Sanders MT,Merle D,Laurin M,Bonillo C,Puillandre N

    更新日期:2021-03-01 00:00:00

  • Homoplasious colony morphology and mito-nuclear phylogenetic discordance among Eastern Pacific octocorals.

    abstract::Octocorals are a diverse and ecologically important group of cnidarians. However, the phylogenetic relationships of many octocoral groups are not well understood and are based mostly on mitochondrial sequence data. In addition, the discovery and description of new gorgonian species displaying unusual or intermediate m...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.02.023

    authors: Ament-Velásquez SL,Breedy O,Cortés J,Guzman HM,Wörheide G,Vargas S

    更新日期:2016-05-01 00:00:00

  • A phylogenetic analysis of the Arecoid Line of palms based on plastid DNA sequence data.

    abstract::A phylogenetic analysis of the Arecoid Line (sensu Moore) of palms was conducted using 7 kb of coding and noncoding plastid DNA sequence data. Recovered maximum-parsimony and maximum-likelihood phylogenies support monophyly for the Arecoid Line relative to the rest of the family but paraphyly for subfamily Arecoideae ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/S1055-7903(02)00022-2

    authors: Hahn WJ

    更新日期:2002-05-01 00:00:00

  • Molecular phylogenetics of a South Pacific sap beetle species complex (Carpophilus spp., Coleoptera: Nitidulidae).

    abstract::Several species of sap beetles in the genus Carpophilus are minor pests of fresh produce and stored products, and are frequently intercepted in biosecurity operations. In the South Pacific region, the superficially similar species C. maculatus and C. oculatus are frequently encountered in these situations. Three subsp...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.04.018

    authors: Brown SD,Armstrong KF,Cruickshank RH

    更新日期:2012-09-01 00:00:00

  • Nuclear and mitochondrial DNA evidence of polyphyly in the avian superfamily Muscicapoidea.

    abstract::Nucleotide sequences of the nuclear c-mos gene and the mitochondrial cytochrome b and ND2 genes were used to assess the monophyly of Sibley and Monroe's [Distribution and Taxonomy of Birds of the World, Yale University Press, New Haven, 1990] Muscicapoidea superfamily. The relationships and monophyly of major lineages...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00191-x

    authors: Voelker G,Spellman GM

    更新日期:2004-02-01 00:00:00

  • Evidence for two independent lineages of shiitake of the americas (Lentinula boryana) based on rDNA and beta-tubulin gene sequences.

    abstract::Portions of ribosomal RNA genes (rDNA) were sequenced from members of the genus Lentinula and were used, along with partial beta-tubulin gene sequences, for phylogenetic reconstructions. The rDNA sequences of L. boryana were separated into two well-defined lineages. Lineage 1 was composed of isolates from Mexico and C...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1999.0677

    authors: Thon MR,Royse DJ

    更新日期:1999-12-01 00:00:00

  • Phylogeny of hagfish based on the mitochondrial 16S rRNA gene.

    abstract::The phylogenetic relationships among the species belonging to the family Myxinidae are still debatable. The mitochondrial DNA sequences from the large ribosomal RNA gene may be of great value for systematic and phylogenetic studies within families. Partial sequences of the 16S rRNA gene were obtained for comparisons a...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00065-4

    authors: Kuo CH,Huang S,Lee SC

    更新日期:2003-09-01 00:00:00

  • A phylogenetic hypothesis for the recently diversified Ruschieae (Aizoaceae) in southern Africa.

    abstract::The Ruschieae is a large tribe of about 1600 species of succulent perennials. They form a major component of the arid parts of the Greater Cape Floristic Region, both in numbers of species and in their density of coverage. So far phylogenetic relationships within the tribe have been unresolved, largely through the pau...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.05.030

    authors: Klak C,Bruyns PV,Hanáček P

    更新日期:2013-12-01 00:00:00

  • Molecular genetic analysis and ecological evidence reveals multiple cryptic species among thynnine wasp pollinators of sexually deceptive orchids.

    abstract::Sexually deceptive Chiloglottis orchids lure their male thynnine wasp pollinators to the flower by emitting semiochemicals that mimic the specific sex pheromone of the wasp. Sexual deception is possible because chemical rather than visual cues play the key role in wasp mate search, suggesting that cryptic wasp species...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.02.004

    authors: Griffiths KE,Trueman JW,Brown GR,Peakall R

    更新日期:2011-04-01 00:00:00

  • Plastome organization, genome-based phylogeny and evolution of plastid genes in Podophylloideae (Berberidaceae).

    abstract::Species of Podophylloideae (Berberidaceae, Ranunculales) are of great pharmacogenetic importance and represent the classic biogeographic disjunction between eastern Asia (EA; 10 ssp.) and eastern North America (ENA; 2 ssp.). However, previous molecular studies of this group suffered from low phylogenetic resolution an...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.07.001

    authors: Ye WQ,Yap ZY,Li P,Comes HP,Qiu YX

    更新日期:2018-10-01 00:00:00

  • Phylogeny, fossils, and model systems in the study of evolutionary developmental biology.

    abstract::The emerging field of evolutionary developmental biology (evo-devo) continues to operate largely under a single paradigm. In this paradigm developmental regulatory genes and processes are compared among a collection of "model organisms" selected primarily on the basis of their historical utility in the study of develo...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00209-9

    authors: Santini F,Stellwag EJ

    更新日期:2002-09-01 00:00:00

  • Molecular phylogeny and biogeography of Malagasy frogs of the genus Gephyromantis.

    abstract::The genus Gephyromantis is a clade within the Malagasy-Comoroan family Mantellidae composed of rainforest frogs that live and breed to varying degrees independently from water. Based on DNA sequences of five mitochondrial and five nuclear genes we inferred the phylogeny of these frogs with full taxon coverage at the s...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.09.023

    authors: Kaffenberger N,Wollenberg KC,Köhler J,Glaw F,Vieites DR,Vences M

    更新日期:2012-01-01 00:00:00

  • Molecular evidence for a species complex in the patagonian lizard Liolaemus bibronii and phylogeography of the closely related Liolaemus gracilis (Squamata: Liolaemini).

    abstract::The lizard genus Liolaemus is endemic to temperate South America and includes 190 species. Liolaemus bibronii has a large geographic distribution and inhabits a great diversity of habitats, including the Monte, Steppe, and high Andean grassland environments. Liolaemus gracilis has a similar body size and shape to L. b...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.09.012

    authors: Morando M,Avila LJ,Turner CR,Sites JW Jr

    更新日期:2007-06-01 00:00:00

  • Phylogeny and phylogeography of the sword-tailed newt, Cynops ensicauda (Amphibia: Caudata), as revealed by nucleotide sequences of mitochondrial DNA.

    abstract::We investigated the phylogenetic relationships and phylogeography among individuals of the endemic newt (Cynops ensicauda) of the Central Ryukyus, Japan based on the mitochondrial cytochrome b gene. The results of phylogenetic analyses showed the presence of remarkable differentiation between assemblages from the Amam...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.11.002

    authors: Tominaga A,Ota H,Matsui M

    更新日期:2010-03-01 00:00:00

  • The polyphyletic genus Sebaea (Gentianaceae): a step forward in understanding the morphological and karyological evolution of the Exaceae.

    abstract::Within the Gentianaceae-Exaceae, the most species-rich genus Sebaea has received very little attention in terms of phylogenetic or karyological investigations. As a result, the exact number of species remains vague and the relationships with the other members of the Exaceae poorly understood. In this paper, we provide...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.07.025

    authors: Kissling J,Yuan YM,Küpfer P,Mansion G

    更新日期:2009-12-01 00:00:00

  • Digging for the spiny rat and hutia phylogeny using a gene capture approach, with the description of a new mammal subfamily.

    abstract::Next generation sequencing (NGS) and genomic database mining allow biologists to gather and select large molecular datasets well suited to address phylogenomics and molecular evolution questions. Here we applied this approach to a mammal family, the Echimyidae, for which generic relationships have been difficult to re...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.03.007

    authors: Courcelle M,Tilak MK,Leite YLR,Douzery EJP,Fabre PH

    更新日期:2019-07-01 00:00:00