Solvent accessible surface area-based hot-spot detection methods for protein-protein and protein-nucleic acid interfaces.

Abstract:

:Due to the importance of hot-spots (HS) detection and the efficiency of computational methodologies, several HS detecting approaches have been developed. The current paper presents new models to predict HS for protein-protein and protein-nucleic acid interactions with better statistics compared with the ones currently reported in literature. These models are based on solvent accessible surface area (SASA) and genetic conservation features subjected to simple Bayes networks (protein-protein systems) and a more complex multi-objective genetic algorithm-support vector machine algorithms (protein-nucleic acid systems). The best models for these interactions have been implemented in two free Web tools.

journal_name

J Chem Inf Model

authors

Munteanu CR,Pimenta AC,Fernandez-Lozano C,Melo A,Cordeiro MN,Moreira IS

doi

10.1021/ci500760m

subject

Has Abstract

pub_date

2015-05-26 00:00:00

pages

1077-86

issue

5

eissn

1549-9596

issn

1549-960X

journal_volume

55

pub_type

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