The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history.

Abstract:

:Successful plant reproduction relies on the perfect orchestration of singular processes that culminate in the product of reproduction: the seed. The floral transition, floral organ development, and fertilization are well-studied processes and the genetic regulation of the various steps is being increasingly unveiled. Initially, based predominantly on genetic studies, the regulatory pathways were considered to be linear, but recent genome-wide analyses, using high-throughput technologies, have begun to reveal a different scenario. Complex gene regulatory networks underlie these processes, including transcription factors, microRNAs, movable factors, hormones, and chromatin-modifying proteins. Here we review recent progress in understanding the networks that control the major steps in plant reproduction, showing how new advances in experimental and computational technologies have been instrumental. As these recent discoveries were obtained using the model species Arabidopsis thaliana, we will restrict this review to regulatory networks in this important model species. However, more fragmentary information obtained from other species reveals that both the developmental processes and the underlying regulatory networks are largely conserved, making this review also of interest to those studying other plant species.

journal_name

J Exp Bot

authors

Pajoro A,Biewers S,Dougali E,Leal Valentim F,Mendes MA,Porri A,Coupland G,Van de Peer Y,van Dijk AD,Colombo L,Davies B,Angenent GC

doi

10.1093/jxb/eru233

subject

Has Abstract

pub_date

2014-09-01 00:00:00

pages

4731-45

issue

17

eissn

0022-0957

issn

1460-2431

pii

eru233

journal_volume

65

pub_type

信件,评审
  • Transcriptional responses of Arabidopsis thaliana ecotypes with different glucosinolate profiles after attack by polyphagous Myzus persicae and oligophagous Brevicoryne brassicae.

    abstract::Plants are equipped with a range of defence mechanisms against herbivorous insects. In cruciferous species, jasmonic acid, salicylic acid, and ethylene along with glucosinolates and their hydrolysis products play important roles in plant protection and plant-insect communication. In turn, a number of herbivores have a...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm043

    authors: Kusnierczyk A,Winge P,Midelfart H,Armbruster WS,Rossiter JT,Bones AM

    更新日期:2007-01-01 00:00:00

  • Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings.

    abstract::The majority of proteins in eukaryotic cells are modified according to highly regulated mechanisms to fulfill specific functions and to achieve localization, stability, and transport. Protein ubiquitination is one of the major post-translational modifications occurring in eukaryotic cells. To obtain the proteomic data...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp134

    authors: Igawa T,Fujiwara M,Takahashi H,Sawasaki T,Endo Y,Seki M,Shinozaki K,Fukao Y,Yanagawa Y

    更新日期:2009-01-01 00:00:00

  • Long-distance signalling from roots to shoots assessed: the flooding story.

    abstract::Several kinds of signal may be generated when roots are exposed to an environmental stress. Some, but not all, are conveyed to shoots in the transpiration stream. Principles are summarized that may help establish experimentally the presence or intensity of root signals transported by transpiration. In many dryland spe...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jexbot/53.367.175

    authors: Jackson MB

    更新日期:2002-02-01 00:00:00

  • Quantitative trait loci associated with longevity of lettuce seeds under conventional and controlled deterioration storage conditions.

    abstract::Lettuce (Lactuca sativa L.) seeds have poor shelf life and exhibit thermoinhibition (fail to germinate) above ∼25°C. Seed priming (controlled hydration followed by drying) alleviates thermoinhibition by increasing the maximum germination temperature, but reduces lettuce seed longevity. Controlled deterioration (CD) or...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erq248

    authors: Schwember AR,Bradford KJ

    更新日期:2010-10-01 00:00:00

  • Auxin-induced expression divergence between Arabidopsis species may originate within the TIR1/AFB-AUX/IAA-ARF module.

    abstract::Auxin is an essential regulator of plant growth and development, and auxin signaling components are conserved among land plants. Yet, a remarkable degree of natural variation in physiological and transcriptional auxin responses has been described among Arabidopsis thaliana accessions. As intraspecies comparisons offer...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw457

    authors: Trenner J,Poeschl Y,Grau J,Gogol-Döring A,Quint M,Delker C

    更新日期:2017-01-01 00:00:00

  • Transporters involved in mineral nutrient uptake in rice.

    abstract::One of the most important roles of plant roots is to take up essential mineral nutrients from the soil for use in plant growth and development. The uptake of mineral elements is mediated by various transporters belonging to different transporter families. Here we reviewed transporters for the uptake of macronutrients ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erw060

    authors: Sasaki A,Yamaji N,Ma JF

    更新日期:2016-06-01 00:00:00

  • Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents.

    abstract::Numerous studies have revealed the extent of genetic and phenotypic variation between both species and cultivars of tomato. Using a series of tomato lines resulting from crosses between a cherry tomato and three independent large fruit cultivar (Levovil, VilB, and VilD), extensive profiling of both central primary met...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp086

    authors: Zanor MI,Rambla JL,Chaïb J,Steppa A,Medina A,Granell A,Fernie AR,Causse M

    更新日期:2009-01-01 00:00:00

  • Differences in glycosyltransferase family 61 accompany variation in seed coat mucilage composition in Plantago spp.

    abstract::Xylans are the most abundant non-cellulosic polysaccharide found in plant cell walls. A diverse range of xylan structures influence tissue function during growth and development. Despite the abundance of xylans in nature, details of the genes and biochemical pathways controlling their biosynthesis are lacking. In this...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw424

    authors: Phan JL,Tucker MR,Khor SF,Shirley N,Lahnstein J,Beahan C,Bacic A,Burton RA

    更新日期:2016-12-01 00:00:00

  • The kiwifruit lycopene beta-cyclase plays a significant role in carotenoid accumulation in fruit.

    abstract::The composition of carotenoids, along with anthocyanins and chlorophyll, accounts for the distinctive range of colour found in the Actinidia (kiwifruit) species. Lutein and beta-carotene are the most abundant carotenoids found during fruit development, with beta-carotene concentration increasing rapidly during fruit m...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp218

    authors: Ampomah-Dwamena C,McGhie T,Wibisono R,Montefiori M,Hellens RP,Allan AC

    更新日期:2009-01-01 00:00:00

  • Distinct metabolic pathways drive monoterpenoid biosynthesis in a natural population of Pelargonium graveolens.

    abstract::Pelargonium graveolens is a wild predecessor to rose-scented geranium hybrids prized for their essential oils used as fragrances and flavorings. However, little is known about their biosynthesis. Here we present metabolic evidence that at least two distinct monoterpene biosynthetic pathways contribute to their volatil...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erz397

    authors: Bergman ME,Chávez Á,Ferrer A,Phillips MA

    更新日期:2020-01-01 00:00:00

  • Temperature during the day, but not during the night, controls flowering of Phalaenopsis orchids.

    abstract::Phalaenopsis orchids are among the most valuable potted flowering crops commercially produced throughout the world because of their long flower life and ease of crop scheduling to meet specific market dates. During commercial production, Phalaenopsis are usually grown at an air temperature > or =28 degrees C to inhibi...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erl176

    authors: Blanchard MG,Runkle ES

    更新日期:2006-01-01 00:00:00

  • Mutational analysis of functional domains within plant K+ uptake channels.

    abstract::Site-directed mutations have been generated in the pore and voltage sensor regions of the inwardly rectifying potassium channels KAT1 and KST1. The properties of mutant channels have been analysed in Xenopus oocytes, and give insights into the structure-function relations of these channels. ...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/48.Special_Issue.415

    authors: Hoth S,Dreyer I,Hedrich R

    更新日期:1997-03-01 00:00:00

  • SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.

    abstract::Lesion-mimic mutants are useful to dissect programmed cell death and defense-related pathways in plants. Here we identified a new rice lesion-mimic mutant, spotted leaf 33 (spl33) and cloned the causal gene by a map-based cloning strategy. SPL33 encodes a eukaryotic translation elongation factor 1 alpha (eEF1A)-like p...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erx001

    authors: Wang S,Lei C,Wang J,Ma J,Tang S,Wang C,Zhao K,Tian P,Zhang H,Qi C,Cheng Z,Zhang X,Guo X,Liu L,Wu C,Wan J

    更新日期:2017-02-01 00:00:00

  • 3D lidar imaging for detecting and understanding plant responses and canopy structure.

    abstract::Understanding and diagnosing plant responses to stress will benefit greatly from three-dimensional (3D) measurement and analysis of plant properties because plant responses are strongly related to their 3D structures. Light detection and ranging (lidar) has recently emerged as a powerful tool for direct 3D measurement...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erl142

    authors: Omasa K,Hosoi F,Konishi A

    更新日期:2007-01-01 00:00:00

  • VpRFP1, a novel C4C4-type RING finger protein gene from Chinese wild Vitis pseudoreticulata, functions as a transcriptional activator in defence response of grapevine.

    abstract::RING finger proteins comprise a large family and play important roles in regulation of growth and development, hormone signalling, and responses to biotic and abiotic stresses in plants. In this study, the identification and functional characterization of a C4C4-type RING finger protein gene from the Chinese wild grap...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err253

    authors: Yu Y,Xu W,Wang S,Xu Y,Li H,Wang Y,Li S

    更新日期:2011-11-01 00:00:00

  • Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.

    abstract::The high efficiency of C4 photosynthesis relies on spatial division of labor, classically with initial carbon fixation in the mesophyll and carbon reduction in the bundle sheath. By employing grinding and serial filtration over liquid nitrogen, we enriched C4 tissues along a developing leaf gradient. This method treat...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,meta分析

    doi:10.1093/jxb/erw463

    authors: Denton AK,Maß J,Külahoglu C,Lercher MJ,Bräutigam A,Weber AP

    更新日期:2017-01-01 00:00:00

  • The role of reactive oxygen species and nitric oxide in programmed cell death associated with self-incompatibility.

    abstract::Successful sexual reproduction often relies on the ability of plants to recognize self- or genetically-related pollen and prevent pollen tube growth soon after germination in order to avoid self-fertilization. Angiosperms have developed different reproductive barriers, one of the most extended being self-incompatibili...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erv083

    authors: Serrano I,Romero-Puertas MC,Sandalio LM,Olmedilla A

    更新日期:2015-05-01 00:00:00

  • Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution.

    abstract::Radial oxygen loss (ROL) and root porosity of rice (Oryza sativa L.) plants grown in either aerated or deoxygenated (stagnant) conditions were combined for the first time with extensive histochemical and biochemical studies of the apoplastic barriers in the roots' peripheral cell layers. Growth in stagnant solution si...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp089

    authors: Kotula L,Ranathunge K,Schreiber L,Steudle E

    更新日期:2009-01-01 00:00:00

  • Solute flux into parasitic plants.

    abstract::Parasitic plants form intimate contacts with host tissue in order to gain access to host solutes. There are a variety of cell types within the host which parasitic plants could access to extract solutes. Depending on the degree to which the parasite has embraced the parasitic lifestyle, the extent of solute flux and t...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jexbot/52.363.2043

    authors: Hibberd JM,Jeschke WD

    更新日期:2001-10-01 00:00:00

  • Cloning and characterization of a 2-Cys peroxiredoxin from Pisum sativum.

    abstract::A cDNA sequence coding for a pea (Pisum sativum L.) 2-Cys peroxiredoxin (2-Cys Prx) has been cloned. The deduced amino acid sequence showed a high sequence homology to the 2-Cys Prx enzymes of Phaseolus vulgaris (86%), Arabidopsis thaliana (75%), and Spinacia oleracea (75%), and contained a chloroplast target sequence...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erh238

    authors: Bernier-Villamor L,Navarro E,Sevilla F,Lázaro JJ

    更新日期:2004-10-01 00:00:00

  • Dying to live: cell elimination as a developmental strategy in angiosperm seeds.

    abstract::The complete elimination of unwanted cells during development is a repeated theme in both multicellular animals and in plants. In plants, such events have been extensively studied and reviewed in terms of their molecular regulation, of marker genes and proteins expressed, and in terms of cellular changes associated wi...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erw364

    authors: Ingram GC

    更新日期:2017-02-01 00:00:00

  • Soil compaction and the architectural plasticity of root systems.

    abstract::Soil compaction is a serious global problem, and is a major cause of inadequate rooting and poor yield in crops around the world. Root system architecture (RSA) describes the spatial arrangement of root components within the soil and determines the plant's exploration of the soil. Soil strength restricts root growth a...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erz383

    authors: Correa J,Postma JA,Watt M,Wojciechowski T

    更新日期:2019-11-18 00:00:00

  • Evidence for functional interaction between brassinosteroids and cadmium response in Arabidopsis thaliana.

    abstract::Plant hormones, in addition to regulating growth and development, are involved in biotic and abiotic stress responses. To investigate whether a hormone signalling pathway plays a role in the plant response to the heavy metal cadmium (Cd), gene expression data in response to eight hormone treatments were retrieved from...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/err335

    authors: Villiers F,Jourdain A,Bastien O,Leonhardt N,Fujioka S,Tichtincky G,Parcy F,Bourguignon J,Hugouvieux V

    更新日期:2012-02-01 00:00:00

  • Combining field performance with controlled environment plant imaging to identify the genetic control of growth and transpiration underlying yield response to water-deficit stress in wheat.

    abstract::Crop yield in low-rainfall environments is a complex trait under multigenic control that shows significant genotype×environment (G×E) interaction. One way to understand and track this trait is to link physiological studies to genetics by using imaging platforms to phenotype large segregating populations. A wheat popul...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erv320

    authors: Parent B,Shahinnia F,Maphosa L,Berger B,Rabie H,Chalmers K,Kovalchuk A,Langridge P,Fleury D

    更新日期:2015-09-01 00:00:00

  • Fluxes in central carbohydrate metabolism of source leaves in a fructan-storing C3 grass: rapid turnover and futile cycling of sucrose in continuous light under contrasted nitrogen nutrition status.

    abstract::This work assessed the central carbohydrate metabolism of actively photosynthesizing leaf blades of a C3 grass (Lolium perenne L.). The study used dynamic (13)C labelling of plants growing in continuous light with contrasting supplies of nitrogen ('low N' and 'high N') and mathematical analysis of the tracer data with...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/ers020

    authors: Lattanzi FA,Ostler U,Wild M,Morvan-Bertrand A,Decau ML,Lehmeier CA,Meuriot F,Prud'homme MP,Schäufele R,Schnyder H

    更新日期:2012-03-01 00:00:00

  • Functional characterization of the three genes encoding 1-deoxy-D-xylulose 5-phosphate synthase in maize.

    abstract::The 1-deoxy-D-xylulose 5-phosphate synthase (DXS) enzyme catalyses the first biosynthetic step of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. In plants the MEP pathway is involved in the synthesis of the common precursors to the plastidic isoprenoids, isopentenyl diphosphate and dimethylallyl diphosphate, i...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erq393

    authors: Cordoba E,Porta H,Arroyo A,San Román C,Medina L,Rodríguez-Concepción M,León P

    更新日期:2011-03-01 00:00:00

  • Post-translational control of tetrapyrrole biosynthesis in plants, algae, and cyanobacteria.

    abstract::The tetrapyrrole biosynthetic pathway provides the vital cofactors and pigments for photoautotrophic growth (chlorophyll), several essential redox reactions in electron transport chains (haem), N- and S-assimilation (sirohaem), and photomorphogenic processes (phytochromobilin). While the biochemistry of the pathway is...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/err437

    authors: Czarnecki O,Grimm B

    更新日期:2012-02-01 00:00:00

  • High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt/osmotic stress tolerance and enhanced callus growth.

    abstract::Heat shock transcription factors (Hsfs) are the central regulators of the heat shock (HS) stress response in all eukaryotic organisms. HsfA2 is one of the Arabidopsis class A Hsfs, and the induction of HsfA2 expression in response to HS stress is highest among all 21 Arabidopsis Hsfs. In this study, it is reported tha...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erm184

    authors: Ogawa D,Yamaguchi K,Nishiuchi T

    更新日期:2007-01-01 00:00:00

  • Mathematical principles and models of plant growth mechanics: from cell wall dynamics to tissue morphogenesis.

    abstract::Plant growth research produces a catalogue of complex open questions. We argue that plant growth is a highly mechanical process, and that mathematics gives an underlying framework with which to probe its fundamental unrevealed mechanisms. This review serves to illustrate the biological insights afforded by mathematica...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章,评审

    doi:10.1093/jxb/erz253

    authors: Smithers ET,Luo J,Dyson RJ

    更新日期:2019-07-23 00:00:00

  • Polyamine oxidase activity contributes to sustain maize leaf elongation under saline stress.

    abstract::The possible involvement of apoplastic reactive oxygen species produced by the oxidation of free polyamines in the leaf growth of salinized maize has been studied here. Salt treatment increased the apoplastic spermine and spermidine levels, mainly in the leaf blade elongation zone. The total activity of polyamine oxid...

    journal_title:Journal of experimental botany

    pub_type: 杂志文章

    doi:10.1093/jxb/erp256

    authors: Rodríguez AA,Maiale SJ,Menéndez AB,Ruiz OA

    更新日期:2009-01-01 00:00:00