Genome-wide association study identifies new disease loci for isolated clubfoot.

Abstract:

BACKGROUND:Clubfoot is a common congenital birth defect with complex inheritance patterns. Currently, the genetic and morphological basis of clubfoot is poorly understood. To identify genetic risk factors associated with clubfoot, we performed a genome-wide association study of common genetic variants. METHODS:The DNA of 396 isolated clubfoot patients and 1000 controls of European descent was genotyped for >600 000 single nucleotide polymorphisms (SNP) using the Affymetrix 6.0 array. Replication was performed with an independent cohort of 370 isolated clubfoot cases and 363 controls of European descent. RESULTS:Strongest evidence for an association of clubfoot was found with an intergenic SNP on chromosome 12q24.31 between NCOR2 and ZNF664 (rs7969148, OR=0.58, p=1.25×10⁻⁵) that was significant on replication (combined OR=0.63, p=1.90×10⁻⁷). Additional suggestive SNPs were identified near FOXN3, SORCS1 and MMP7/TMEM123 that also confirmed on replication. CONCLUSIONS:Our study suggests a potential role for common genetic variation in several genes that have not previously been implicated in clubfoot pathogenesis.

journal_name

J Med Genet

authors

Zhang TX,Haller G,Lin P,Alvarado DM,Hecht JT,Blanton SH,Stephens Richards B,Rice JP,Dobbs MB,Gurnett CA

doi

10.1136/jmedgenet-2014-102303

subject

Has Abstract

pub_date

2014-05-01 00:00:00

pages

334-9

issue

5

eissn

0022-2593

issn

1468-6244

pii

jmedgenet-2014-102303

journal_volume

51

pub_type

杂志文章
  • De novo HRAS and KRAS mutations in two siblings with short stature and neuro-cardio-facio-cutaneous features.

    abstract::Mutations in genes involved in Ras signalling cause Noonan syndrome and other disorders characterised by growth disturbances and variable neuro-cardio-facio-cutaneous features. We describe two sisters, 46 and 31 years old, who presented with dysmorphic features, hypotonia, feeding difficulties, retarded growth and psy...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2007.049361

    authors: Søvik O,Schubbert S,Houge G,Steine SJ,Norgård G,Engelsen B,Njølstad PR,Shannon K,Molven A

    更新日期:2007-07-01 00:00:00

  • Lynch syndrome caused by MLH1 mutations is associated with an increased risk of breast cancer: a cohort study.

    abstract:INTRODUCTION:Lynch syndrome is known to cause an increased risk of malignancies, including bowel and endometrial cancers. However, the risk of breast cancer associated with mutations in the mismatch repair (MMR) genes that cause Lynch syndrome is still unclear. MATERIALS AND METHODS:This study assesses the cumulative ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2015-103216

    authors: Harkness EF,Barrow E,Newton K,Green K,Clancy T,Lalloo F,Hill J,Evans DG

    更新日期:2015-08-01 00:00:00

  • A family study of hidradenitis suppurativa.

    abstract::A family study of hidradenitis suppurativa was undertaken based on 26 subjects with the disease. The probands were obtained from Hospital Activity Analysis (HAA) records for a three year period (1980 to 1983) and by direct referral from hospital specialists over a six month period (1983 to 1984). Family pedigree infor...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.22.5.367

    authors: Fitzsimmons JS,Guilbert PR

    更新日期:1985-10-01 00:00:00

  • Deletion 2q: two new cases with karyotypes 46,XY,del(2)(q31q33) and 46,XX,del(2)(q36).

    abstract::We describe the clinical and cytogenetic findings of two patients with deletions of the long arm of chromosome 2. One has an interstitial deletion identical to that found in a previously reported patient, although they are phenotypically dissimilar. The other patient has a terminal deletion, the first such deletion re...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.20.3.199

    authors: Young RS,Shapiro SD,Hansen KL,Hine LK,Rainosek DE,Guerra FA

    更新日期:1983-06-01 00:00:00

  • Detecting low penetrance genes in cancer: the way ahead.

    abstract::The search for the genes responsible for many complex genetic diseases is well under way and has already been successful in some cases. The study of cancer as a complex genetic disease has lagged behind other conditions, largely because of particular problems that are associated with malignant disease. Cancer also, ho...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmg.37.3.161

    authors: Houlston RS,Tomlinson IP

    更新日期:2000-03-01 00:00:00

  • Distal hereditary motor neuronopathy of the Jerash type is caused by a novel SIGMAR1 c.500A>T missense mutation.

    abstract:BACKGROUND:Distal hereditary motor neuronopathies (dHMN) are a group of genetic disorders characterised by motor neuron degeneration leading to muscle weakness that are caused by mutations in various genes. HMNJ is a distinct form of the disease that has been identified in patients from the Jerash region of Jordan. Our...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2019-106108

    authors: Ververis A,Dajani R,Koutsou P,Aloqaily A,Nelson-Williams C,Loring E,Arafat A,Mubaidin AF,Horany K,Bader MB,Al-Baho Y,Ali B,Muhtaseb A,DeSpenza T Jr,Al-Qudah AA,Middleton LT,Zamba-Papanicolaou E,Lifton R,Christodoulou

    更新日期:2020-03-01 00:00:00

  • Normal erythrocyte membrane Gs alpha bioactivity in two unrelated patients with acrodysostosis.

    abstract::Shortening of the tubular bones of the hands and feet with cone shaped epiphyses is known as peripheral dysostosis and is common to several syndromes including acrodysostosis and Albright's hereditary osteodystrophy (AHO). The underlying defect in AHO is known to be a reduction in bioactivity of the alpha subunit of t...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.2.133

    authors: Wilson LC,Oude Luttikhuis ME,Baraitser M,Kingston HM,Trembath RC

    更新日期:1997-02-01 00:00:00

  • Duchenne muscular dystrophy in Wales: impact of DNA linkage analysis and cDNA deletion screening.

    abstract::A register of families with Duchenne muscular dystrophy (DMD) has been maintained in Wales since 1973. Since 1986 we have attempted to refine carrier status, and when necessary offer prenatal diagnosis, for those at significant risk by using intragenic probes. cDNA probes were included from the beginning of 1988. Thir...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.26.9.565

    authors: Norman AM,Upadhyaya M,Thomas NS,Roberts K,Harper PS

    更新日期:1989-09-01 00:00:00

  • Hereditary haemorrhagic telangiectasia: a clinical analysis.

    abstract::Data from 98 patients with hereditary haemorrhagic telangiectasia (HHT) are presented. All were symptomatic by 40 years of age and 62% by 16 years. Nose bleeding was the first symptom of disease in 90% of cases with mucocutaneous telangiectases appearing 5 to 20 years later. Complications of HHT are discussed and an a...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.29.8.527

    authors: Porteous ME,Burn J,Proctor SJ

    更新日期:1992-08-01 00:00:00

  • Pericentric inversion of chromosome 7 (inv(7) (p22q11.2)) and ring chromosome 8 (r(8) (p23q24.3)) in a girl with minor anomalies.

    abstract::A 13 year old girl was referred with congenital microcephaly, developmental delay, a prominent nose, highly arched palate, and an apparently low set left ear. She was found to have a pericentric inversion of one chromosome 7 and a ring chromosome 8, 46,XX,inv(7) (pter----p22::q11.23----p22::q11.23----qter), r(8) (p23q...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.29.1.66

    authors: Verma RS,Conte RA,Pitter JH,Luke S

    更新日期:1992-01-01 00:00:00

  • Family in which Duchenne's muscular dystrophy and protan colour blindness are segregating.

    abstract::A family is recorded in which Duchenne's muscular dystrophy and protan colour blindness are segregating. Of 4 members of the second generation at least one is a recombinant. The lod scores have been calculated and added to those already published. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.14.2.130

    authors: Greig DN

    更新日期:1977-04-01 00:00:00

  • New insights into 5α-reductase type 2 deficiency based on a multi-centre study: regional distribution and genotype-phenotype profiling of SRD5A2 in 190 Chinese patients.

    abstract:BACKGROUND:The 5α-reductase type 2 (5α-RD2) deficiency caused by mutations in the steroid 5α-reductase 2 (SRD5A2) gene results in variable degrees of undervirilisation in patients with 46,XY disorders of sex development. This study aims to profile the regional distribution and phenotype-genotype characteristics of SRD5...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1136/jmedgenet-2018-105915

    authors: Gui B,Song Y,Su Z,Luo FH,Chen L,Wang X,Chen R,Yang Y,Wang J,Zhao X,Fan L,Liu X,Wang Y,Chen S,Gong C

    更新日期:2019-10-01 00:00:00

  • Congenital renal tubular dysplasia and skull ossification defects similar to teratogenic effects of angiotensin converting enzyme (ACE) inhibitors.

    abstract::An apparently autosomal recessive syndrome of congenital renal tubular dysplasia and skull ossification defects is described in five infants from two separate, consanguineous, Pakistani Muslim kindreds. The clinical, pathological, and radiological features are similar to the phenotype associated with fetal exposure to...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.7.541

    authors: Kumar D,Moss G,Primhak R,Coombs R

    更新日期:1997-07-01 00:00:00

  • X mapping in man: evidence against direct measurable linkage between ocular albinism and deutan colour blindness.

    abstract::A Newfoundland kindred in which ocular albinism and deutan colour blindness are segregating provides strong evidence against the loci for these two X-borne characters being within direct measurable distance of each other. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.13.4.319

    authors: Pearce WG,Sanger R

    更新日期:1976-08-01 00:00:00

  • Comprehensive spectrum of BRCA1 and BRCA2 deleterious mutations in breast cancer in Asian countries.

    abstract::Approximately 5%-10% of breast cancers are due to genetic predisposition caused by germline mutations; the most commonly tested genes are BRCA1 and BRCA2 mutations. Some mutations are unique to one family and others are recurrent; the spectrum of BRCA1/BRCA2 mutations varies depending on the geographical origins, popu...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmedgenet-2015-103132

    authors: Kwong A,Shin VY,Ho JC,Kang E,Nakamura S,Teo SH,Lee AS,Sng JH,Ginsburg OM,Kurian AW,Weitzel JN,Siu MT,Law FB,Chan TL,Narod SA,Ford JM,Ma ES,Kim SW

    更新日期:2016-01-01 00:00:00

  • A study of retinitis pigmentosa in the City of Birmingham. II Clinical and genetic heterogeneity.

    abstract::This is a study of 138 index patients with retinitis pigmentosa (RP) and their families, in which the selection of index patients was solely on the basis of their residence in Birmingham. Clinical analysis showed that severe disease was as likely to indicate dominant or non-genetic RP as to indicate recessive disease,...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.21.6.421

    authors: Bundey S,Crews SJ

    更新日期:1984-12-01 00:00:00

  • Apparent enhanced response to the induction of sister chromatid exchange by mitomycin C in myotonic dystrophy.

    abstract::The spontaneous and mitomycin C (MMC) induced sister chromatid exchange (SCE) frequencies were examined in five adults with myotonic dystrophy (MD). There was no significant difference in the spontaneous incidence of SCE between MD patients and controls. However, a significantly enhanced response to the induction of S...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.19.2.135

    authors: Vijayalaxmi,Emery AE,Evans HJ

    更新日期:1982-04-01 00:00:00

  • Pericentric inversions inv(2)(p11q13) and inv(2)(p13q11) in 2 unrelated families.

    abstract::Pericentric inversions in chromosome 2 were traced in 2 unrelated North American black families. In the case of inv(2)(p13q11) no effect on reproduction was observed. In the case of inv(2)(p11q13) some reproductive abnormalities were noted which might be related to the inversion. ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.15.5.388

    authors: Phillips RB

    更新日期:1978-10-01 00:00:00

  • Positional mapping of PRKD1, NRP1 and PRDM1 as novel candidate disease genes in truncus arteriosus.

    abstract:BACKGROUND:Truncus arteriosus (TA) is characterised by failure of septation of the outflow tract into aortic and pulmonary trunks and is associated with high morbidity and mortality. Although ranked among the least common congenital heart defects, TA provides an excellent model for the role of individual genes in cardi...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2015-102992

    authors: Shaheen R,Al Hashem A,Alghamdi MH,Seidahmad MZ,Wakil SM,Dagriri K,Keavney B,Goodship J,Alyousif S,Al-Habshan FM,Alhussein K,Almoisheer A,Ibrahim N,Alkuraya FS

    更新日期:2015-05-01 00:00:00

  • Wide range of reduced penetrance alleles in spinal and bulbar muscular atrophy: a model-based approach.

    abstract:BACKGROUND:Spinal and bulbar muscular atrophy (SBMA), also known as Kennedy's disease, is an X-linked motor neuron disorder caused by an expanded CAG repeat in the gene coding for the androgen receptor (AR). The range and significance of reduced penetrance alleles in SBMA has not been fully determined to date. We prese...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmedgenet-2020-106963

    authors: Laskaratos A,Breza M,Karadima G,Koutsis G

    更新日期:2020-06-22 00:00:00

  • Molecular characterisation of six patients with prolidase deficiency: identification of the first small duplication in the prolidase gene and of a mutation generating symptomatic and asymptomatic outcomes within the same family.

    abstract::Prolidase deficiency (PD) is a rare autosomal recessive connective tissue disorder caused by mutations in the prolidase gene. The PD patients show a wide range of clinical outcomes characterised mainly by intractable skin ulcers, mental retardation and recurrent respiratory infections. Here we describe five different ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2006.043315

    authors: Lupi A,Rossi A,Campari E,Pecora F,Lund AM,Elcioglu NH,Gultepe M,Di Rocco M,Cetta G,Forlino A

    更新日期:2006-12-01 00:00:00

  • A comprehensive strategy for the subtyping of patients with Fanconi anaemia: conclusions from the Spanish Fanconi Anemia Research Network.

    abstract:BACKGROUND:Fanconi anaemia is a heterogeneous genetic disease, where 12 complementation groups have been already described. Identifying the complementation group in patients with Fanconi anaemia constitutes a direct procedure to confirm the diagnosis of the disease and is required for the recruitment of these patients ...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2006.044719

    authors: Antonio Casado J,Callén E,Jacome A,Río P,Castella M,Lobitz S,Ferro T,Muñoz A,Sevilla J,Cantalejo A,Cela E,Cervera J,Sánchez-Calero J,Badell I,Estella J,Dasí A,Olivé T,José Ortega J,Rodriguez-Villa A,Tapia M,Moliné

    更新日期:2007-04-01 00:00:00

  • Prenatal and postnatal growth failure associated with maternal heterodisomy for chromosome 7.

    abstract::The association of maternal uniparental disomy for chromosome 7 and postnatal growth failure has been reported in four cases and suggests the presence of genomic imprinting of one or more growth related genes on chromosome 7. However, in the reported cases, the possibility of homozygosity for a recessive mutation coul...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章,评审

    doi:10.1136/jmg.32.11.871

    authors: Langlois S,Yong SL,Wilson RD,Kwong LC,Kalousek DK

    更新日期:1995-11-01 00:00:00

  • Evidence of genetic heterogeneity in the autosomal recessive adult forms of limb-girdle muscular dystrophy following linkage analysis with 15q probes in Brazilian families.

    abstract::The autosomal recessive limb-girdle muscular dystrophies (LGMD) represent a heterogeneous group of diseases which may be characterised by one or more autosomal loci. A gene at 15q has recently been found to be responsible for a mild form of LGMD in a group of families from the isolated island of Réunion, now classifie...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.30.5.385

    authors: Passos-Bueno MR,Richard I,Vainzof M,Fougerousse F,Weissenbach J,Broux O,Cohen D,Akiyama J,Marie SK,Carvalho AA

    更新日期:1993-05-01 00:00:00

  • Segregation analysis of dominant osteogenesis imperfecta in Italy.

    abstract::We have performed linkage analysis in seven Italian families, in which mild osteogenesis imperfecta (OI) segregated as a dominant trait, by means of six DNA restriction fragment length polymorphisms (RFLPs) of type I collagen genes. OI type I was linked to the alpha 1(I) gene (COL1A1) in two families, and to the alpha...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.27.6.367

    authors: Mottes M,Cugola L,Cappello N,Pignatti PF

    更新日期:1990-06-01 00:00:00

  • Extra G positive band on the long arm of chromosome 9.

    abstract::Various heteromorphisms of the 9q heterochromatic area have been reported. In most instances, the extra G positive band is accompanied by an extra C band. We describe a family where the extra G band is totally euchromatic and does not include an extra C band. It is not clear whether these two types of variant chromoso...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.30.7.613

    authors: Knight LA,Soon GM,Tan M

    更新日期:1993-07-01 00:00:00

  • Recurrence risks in complex inheritance with special regard to pyloric stenosis.

    abstract::A large body of data on segregating families is used to generate specific recurrence risks conditional on sex and birth order for the best-fitting model of polygenes plus maternal effect. The method is general for diseases of complex inheritance, and lies within the competence of any serious genetic clinic. The questi...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.14.6.408

    authors: Lalouel JM,Morton NE,MacLean CJ,Jackson J

    更新日期:1977-12-01 00:00:00

  • Partial trisomy 18 in a family with a translocation (18;21)(q21;q22).

    abstract::A family is described in which 2 sibs had similar congenital abnormalities. Chromosome investigation of the mother and another child disclosed they were carriers of a translocation t(18;21)(q21;q22). The karyotype of one of the abnormal infants was determined and was found to be consistent with partial trisomy 18,46,X...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.15.2.148

    authors: Niazi M,Coleman DV,Saldaña-Garcia P

    更新日期:1978-04-01 00:00:00

  • Identification of a recombination event narrowing the Lafora disease gene region.

    abstract::Patients affected with progressive myoclonus epilepsy of the Lafora type present during late adolescence with a characteristic EEG pattern and Lafora bodies seen on skin biopsy. The critical region for the Lafora gene has been localised to chromosome 6q24 flanked by the dinucleotide repeat markers D6S292 and D6S420. T...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.34.7.590

    authors: Maddox LO,Descartes M,Collins J,Keating J,Rosenfeld S,Palmer C,Carroll AJ,Kuzniecky R

    更新日期:1997-07-01 00:00:00

  • Analysis of missense variation in human BRCA1 in the context of interspecific sequence variation.

    abstract:INTRODUCTION:Interpretation of results from mutation screening of tumour suppressor genes known to harbour high risk susceptibility mutations, such as APC, BRCA1, BRCA2, MLH1, MSH2, TP53, and PTEN, is becoming an increasingly important part of clinical practice. Interpretation of truncating mutations, gene rearrangemen...

    journal_title:Journal of medical genetics

    pub_type: 杂志文章

    doi:10.1136/jmg.2003.015867

    authors: Abkevich V,Zharkikh A,Deffenbaugh AM,Frank D,Chen Y,Shattuck D,Skolnick MH,Gutin A,Tavtigian SV

    更新日期:2004-07-01 00:00:00