Abstract:
BACKGROUND:Mass spectrometry is an essential analytical technique for high-throughput analysis in proteomics and metabolomics. The development of new separation techniques, precise mass analyzers and experimental protocols is a very active field of research. This leads to more complex experimental setups yielding ever increasing amounts of data. Consequently, analysis of the data is currently often the bottleneck for experimental studies. Although software tools for many data analysis tasks are available today, they are often hard to combine with each other or not flexible enough to allow for rapid prototyping of a new analysis workflow. RESULTS:We present OpenMS, a software framework for rapid application development in mass spectrometry. OpenMS has been designed to be portable, easy-to-use and robust while offering a rich functionality ranging from basic data structures to sophisticated algorithms for data analysis. This has already been demonstrated in several studies. CONCLUSION:OpenMS is available under the Lesser GNU Public License (LGPL) from the project website at http://www.openms.de.
journal_name
BMC Bioinformaticsjournal_title
BMC bioinformaticsauthors
Sturm M,Bertsch A,Gröpl C,Hildebrandt A,Hussong R,Lange E,Pfeifer N,Schulz-Trieglaff O,Zerck A,Reinert K,Kohlbacher Odoi
10.1186/1471-2105-9-163subject
Has Abstractpub_date
2008-03-26 00:00:00pages
163issn
1471-2105pii
1471-2105-9-163journal_volume
9pub_type
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