Nuclear markers reveal that inter-lake cichlids' similar morphologies do not reflect similar genealogy.

Abstract:

:The apparent inter-lake morphological similarity among East African Great Lakes' cichlid species/genera has left evolutionary biologists asking whether such similarity is due to sharing of common ancestor or mere convergent evolution. In order to answer such question, we first used Geometric Morphometrics, GM, to quantify morphological similarity and then subsequently used Amplified Fragment Length Polymorphism, AFLP, to determine if similar morphologies imply shared ancestry or convergent evolution. GM revealed that not all presumed morphological similar pairs were indeed similar, and the dendrogram generated from AFLP data indicated distinct clusters corresponding to each lake and not inter-lake morphological similar pairs. Such results imply that the morphological similarity is due to convergent evolution and not shared ancestry. The congruency of GM and AFLP generated dendrograms imply that GM is capable of picking up phylogenetic signal, and thus GM can be potential tool in phylogenetic systematics.

journal_name

Mol Phylogenet Evol

authors

Kassam D,Seki S,Horic M,Yamaoka K

doi

10.1016/j.ympev.2006.03.002

subject

Has Abstract

pub_date

2006-08-01 00:00:00

pages

383-8

issue

2

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(06)00084-4

journal_volume

40

pub_type

杂志文章
  • Evolutionary history of freshwater sculpins, genus Cottus (Teleostei; Cottidae) and related taxa, as inferred from mitochondrial DNA phylogeny.

    abstract::The freshwater sculpins, genus Cottus (Teleostei; Cottidae), comprise bottom-dwelling fishes that exhibit various life-history styles, having radiated throughout Northern Hemisphere freshwater habitats. The phylogenetic relationships among Cottus and related taxa were estimated from mitochondrial DNA 12S rRNA and cont...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.06.004

    authors: Yokoyama R,Goto A

    更新日期:2005-09-01 00:00:00

  • Phylogenetic relationships between oviparous and viviparous populations of an Australian lizard (Lerista bougainvillii, scincidae).

    abstract::Viviparity has evolved from oviparity in many vertebrate lineages, and species that contain both oviparous and viviparous populations offer the best opportunity for a detailed examination of the processes involved in this major life-history transition. However, although several such species have been reported, none ha...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1997.0468

    authors: Fairbairn J,Shine R,Moritz C,Frommer M

    更新日期:1998-08-01 00:00:00

  • Land bridges in the Pleistocene contributed to flora assembly on the continental islands of South China: Insights from the evolutionary history of Quercus championii.

    abstract::The South China Mainland (SCM) and its adjacent continental islands are a global biodiversity hotspot. However, how and when plants dispersed between SCM and Hainan/Taiwan Islands remains largely unknown. In this study, we used restriction site-associated DNA sequencing (RAD-seq) to identify the demographic dynamics a...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.11.021

    authors: Jiang XL,Gardner EM,Meng HH,Deng M,Xu GB

    更新日期:2019-03-01 00:00:00

  • Shark tales: a molecular species-level phylogeny of sharks (Selachimorpha, Chondrichthyes).

    abstract::Sharks are a diverse and ecologically important group, including some of the ocean's largest predatory animals. Sharks are also commercially important, with many species suffering overexploitation and facing extinction. However, despite a long evolutionary history, commercial, and conservation importance, phylogenetic...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.11.018

    authors: Vélez-Zuazo X,Agnarsson I

    更新日期:2011-02-01 00:00:00

  • Historical biogeography of the termite clade Rhinotermitinae (Blattodea: Isoptera).

    abstract::Termites are the principal decomposers in tropical and subtropical ecosystems around the world. Time-calibrated molecular phylogenies show that some lineages of Neoisoptera diversified during the Oligocene and Miocene, and acquired their pantropical distribution through transoceanic dispersal events, probably by rafti...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.11.005

    authors: Wang M,Buček A,Šobotník J,Sillam-Dussès D,Evans TA,Roisin Y,Lo N,Bourguignon T

    更新日期:2019-03-01 00:00:00

  • Poxvirus genome evolution by gene gain and loss.

    abstract::The poxviruses (Poxviridae) are a family of viruses with double-stranded DNA genomes and substantial numbers (often >200) of genes per genome. We studied the patterns of gene gain and loss over the evolutionary history of 17 poxvirus complete genomes. A phylogeny based on gene family presence/absence showed good agree...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.12.008

    authors: Hughes AL,Friedman R

    更新日期:2005-04-01 00:00:00

  • Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes.

    abstract::Recent studies have shown that species in the genus Myotis have evolved a number of convergent morphological traits, many of which are more related to their mode of food procurement than to their phylogeny. Surprisingly, the biogeographic origins of these species are a much better predictor of phylogenetic relationshi...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.06.019

    authors: Stadelmann B,Lin LK,Kunz TH,Ruedi M

    更新日期:2007-04-01 00:00:00

  • Multiple patterns of rDNA evolution following polyploidy in Oryza.

    abstract::Ribosomal ITS sequences are commonly used for phylogenetic reconstruction because they are included in rDNA repeats, and hence are ubiquitous and present in high copy number. Ribosomal rDNA repeats often undergo rapid concerted evolution within and between arrays. Interspecific hybridization merges divergent repeat ty...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.10.023

    authors: Bao Y,Wendel JF,Ge S

    更新日期:2010-04-01 00:00:00

  • Molecular phylogeny and biogeography of the spider ants, genus Leptomyrmex Mayr (Hymenoptera: Formicidae).

    abstract::This study provides the first phylogenetic reconstruction of the ant genus Leptomyrmex Mayr, a prominent endemic component of rain forest and wet sclerophyll forest in Australia, New Guinea and New Caledonia. Five genes are used to reconstruct phylogeny and estimate of ages of diversification in order to test congruen...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.03.004

    authors: Lucky A

    更新日期:2011-05-01 00:00:00

  • Life on the rocks: Multilocus phylogeography of rock hyrax (Procavia capensis) from southern Africa.

    abstract::Understanding the role of geography and climatic cycles in determining patterns of biodiversity is important in comparative and evolutionary biology and conservation. We studied the phylogeographic pattern and historical demography of a rock-dwelling small mammal species from southern Africa, the rock hyrax Procavia c...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.04.006

    authors: Maswanganye KA,Cunningham MJ,Bennett NC,Chimimba CT,Bloomer P

    更新日期:2017-09-01 00:00:00

  • Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes.

    abstract::Because of their importance for proper development of the bilaterian embryo, Hox genes have taken center stage for investigations into the evolution of bilaterian metazoans. Taxonomic surveys of major protostome taxa have shown that Hox genes are also excellent phylogenetic markers, as specific Hox genes are restricte...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.10.007

    authors: Peterson KJ

    更新日期:2004-06-01 00:00:00

  • Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data.

    abstract::The walnut family Juglandaceae was widely distributed in the Northern Hemisphere while several extant genera now exhibit intercontinental disjunctions. Recent progress in the systematics of Juglandaceae has greatly broadened our knowledge about its origin and evolution. However, there are still uncertainties about the...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.106802

    authors: Mu XY,Tong L,Sun M,Zhu YX,Wen J,Lin QW,Liu B

    更新日期:2020-06-01 00:00:00

  • Phylogeny of the Neotropical genus Acestrorhynchus (Ostariophysi: Characiformes) based on nuclear and mitochondrial gene sequences and morphology: a total evidence approach.

    abstract::Acestrorhynchus is the sole genus of the family Acestrorhynchidae which includes 14 species currently recognized as valid. Species of Acestrorhynchus comprise small-to-medium sized piscivorous fishes and have been traditionally grouped on the basis of well-defined color patterns. A recent phylogeny, based on morpholog...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.12.025

    authors: Pretti VQ,Calcagnotto D,Toledo-Piza M,de Almeida-Toledo LF

    更新日期:2009-08-01 00:00:00

  • Molecular evolution of mammalian ribonucleases 1.

    abstract::There have been many studies on the chemistry of mammalian pancreatic ribonucleases (ribonucleases 1), but the functional biology of this family of homologous proteins is still largely unknown. Many studies have been performed on the molecular evolution and properties of this enzyme from species belonging to a large n...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00014-9

    authors: Dubois JY,Ursing BM,Kolkman JA,Beintema JJ

    更新日期:2003-06-01 00:00:00

  • Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor.

    abstract::It is commonly believed that gene duplications provide the raw material for morphological evolution. Both the number of genes and size of gene families have increased during the diversification of land plants. Several small proteins that regulate transcription factors have recently been identified in plants, including...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.06.017

    authors: Floyd SK,Ryan JG,Conway SJ,Brenner E,Burris KP,Burris JN,Chen T,Edger PP,Graham SW,Leebens-Mack JH,Pires JC,Rothfels CJ,Sigel EM,Stevenson DW,Neal Stewart C Jr,Wong GK,Bowman JL

    更新日期:2014-12-01 00:00:00

  • Nocturnal claroteine catfishes reveal dual colonisation but a single radiation in Lake Tanganyika.

    abstract::Lake Tanganyika (LT) is a biodiversity hotspot supporting many endemic radiations that provide comparative systems in which to investigate if there are common factors leading to the build-up of its considerable diversity. Despite LT containing the highest diversity of lacustrine catfishes on Earth, the evolutionary re...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.01.013

    authors: Peart CR,Bills R,Wilkinson M,Day JJ

    更新日期:2014-04-01 00:00:00

  • Biogeography of Japanese wood-feeding cockroaches genus Salganea and Panesthia (Blaberidae: Panesthiinae).

    abstract::We investigated mitochondrial COII gene sequences of Japanese wood-feeding cockroaches (Salganea spp. and Panesthia angustipennis) in detail to investigate their biogeography. The transition (TI) numbers between each genus north and south of the Tokara Strait, which is a border of the Oriental and the Palaearctic faun...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00399-8

    authors: Maekawa K,Matsumoto T

    更新日期:2003-04-01 00:00:00

  • A time-calibrated, multi-locus phylogeny of piranhas and pacus (Characiformes: Serrasalmidae) and a comparison of species tree methods.

    abstract::The phylogeny of piranhas, pacus, and relatives (family Serrasalmidae) was inferred on the basis of DNA sequences from eleven gene fragments that include the mitochondrial control region plus 10 nuclear genes (two exons and eight introns). The new data were obtained for a representative sampling of 53 specimens, colle...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.06.018

    authors: Thompson AW,Betancur-R R,López-Fernández H,Ortí G

    更新日期:2014-12-01 00:00:00

  • Phylogenetic analysis provides insights into the evolution of Asian fireflies and adult bioluminescence.

    abstract::Fireflies are one of the best-known examples of luminescent organisms. The limited geographic distribution and rarity of some firefly genera have hindered molecular phylogenetic analysis, resulting in uncertainty in regard to firefly phylogeny. Here, using genome skimming next-generation sequencing, we sequenced 23 As...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.106600

    authors: Chen X,Dong Z,Liu G,He J,Zhao R,Wang W,Peng Y,Li X

    更新日期:2019-11-01 00:00:00

  • Historical biogeography of Tyrrhenian land snails: the Marmorana-Tyrrheniberus radiation (Pulmonata, Helicidae).

    abstract::The few studies available on Tyrrhenian land snails support high diversification in the Italian Peninsula and groups structured mainly by vicariant events. Here we investigated the phylogeny of a conchologically diversified group of Tyrrhenian land snails assigned to the genera Marmorana and Tyrrheniberus. We construc...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.11.024

    authors: Fiorentino V,Salomone N,Manganelli G,Giusti F

    更新日期:2010-04-01 00:00:00

  • Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera--a lineage with both rapidly and slowly evolving mitochondrial genomes.

    abstract::We entirely sequenced two new hymenopteran mitochondrial genomes (Cephus cinctus and Orussus occidentalis), and a substantial portion of another three hymenopterans (Schlettererius cinctipes, Venturia canescens, and Enicospilus). We analyze them together with nine others reported in the literature. We establish that t...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2009.04.001

    authors: Dowton M,Cameron SL,Austin AD,Whiting MF

    更新日期:2009-08-01 00:00:00

  • Variation in ribosomal and mitochondrial DNA sequences demonstrates the existence of intraspecific groups in Paramecium multimicronucleatum (Ciliophora, Oligohymenophorea).

    abstract::This is the first phylogenetic study of the intraspecific variability within Paramecium multimicronucleatum with the application of two-loci analysis (ITS1-5.8S-ITS2-5'LSU rDNA and COI mtDNA) carried out on numerous strains originated from different continents. The species has been shown to have a complex structure of...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.01.024

    authors: Tarcz S,Potekhin A,Rautian M,Przyboś E

    更新日期:2012-05-01 00:00:00

  • Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus.

    abstract::Phylogenetic and paleontological analyses are combined to reveal patterns of species origination and divergence and to define the significance of potential and actual barriers to dispersal in Conus, a species-rich genus of predatory gastropods distributed throughout the world's tropical oceans. Species-level phylogene...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2004.09.012

    authors: Duda TF Jr,Kohn AJ

    更新日期:2005-02-01 00:00:00

  • Cryptic diversity in Brazilian endemic monkey frogs (Hylidae, Phyllomedusinae, Pithecopus) revealed by multispecies coalescent and integrative approaches.

    abstract::Even though Brazil is the world leader in amphibian diversity, a significant part of its richness remains unknown or hidden under cryptic taxa. Here, we used model-based species delimitation in an integrative taxonomic approach, by gathering molecular and morphometric data to assess cryptic taxa within the monkey frog...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.11.022

    authors: Ramos EKS,Magalhães RF,Marques NCS,Baêta D,Garcia PCA,Santos FR

    更新日期:2019-03-01 00:00:00

  • Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes.

    abstract::Despite its great diversity and biomedical importance, the rodent subfamily Murinae is poorly resolved phylogenetically. We present the first cladistic analysis sampling multiple representatives of most major groups based on DNA sequence for three nuclear (GHR, RAG1, and AP5) and one mitochondrial (COII and parts of C...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.04.016

    authors: Steppan SJ,Adkins RM,Spinks PQ,Hale C

    更新日期:2005-11-01 00:00:00

  • Phylogeny of Cephalobina (Nematoda): molecular evidence for recurrent evolution of probolae and incongruence with traditional classifications.

    abstract::Nematodes of the suborder Cephalobina include an ecologically and morphologically diverse array of species that range from soil-dwelling microbivores to parasites of vertebrates and invertebrates. Despite a long history of study, certain of these microbivores (Cephaloboidea) present some of the most intractable proble...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.04.005

    authors: Nadler SA,De Ley P,Mundo-Ocampo M,Smythe AB,Patricia Stock S,Bumbarger D,Adams BJ,De Ley IT,Holovachov O,Baldwin JG

    更新日期:2006-09-01 00:00:00

  • Phylogeographic evidence that the distribution of cryptic euryhaline species in the Gambusia punctata species group in Cuba was shaped by the archipelago geological history.

    abstract::The main drivers of diversification of freshwater fishes in Cuba are not yet well understood. For example, salt tolerance was thought as the main factor involved in the diversification of Gambusia punctata species group in this archipelago. However, evidence from a recent DNA barcoding survey suggested the presence of...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.106712

    authors: García-Machado E,Ponce de Léon JL,Gutiérrez-Costa MA,Michel-Salzat A,Germon I,Casane D

    更新日期:2020-03-01 00:00:00

  • Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): inferences from a genomic transect and the multispecies coalescent.

    abstract::Reconstructing species trees by incorporating information from many independent gene trees reduces the confounding influence of stochastic lineage sorting. Such analyses are particularly important for taxa that share polymorphisms due to incomplete lineage sorting or introgressive hybridization. We investigated phylog...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.08.008

    authors: Lavretsky P,McCracken KG,Peters JL

    更新日期:2014-01-01 00:00:00

  • Phylogeography of montane dragons could shed light on the history of forests and diversification processes on Sumatra.

    abstract::Biogeographical evidence, both, for and against the "regional endemism paradigm" hypothesis has been uncovered across the Greater Sunda Region (Sundaland) of Southeast Asia. Additionally, there are competing hypotheses regarding how Pleistocene forests may have impacted biological patterns and processes in Sumatra. Us...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.106840

    authors: Shaney KJ,Maldonado J,Smart U,Thammachoti P,Fujita M,Hamidy A,Kurniawan N,Harvey MB,Smith EN

    更新日期:2020-08-01 00:00:00

  • Phylogenetic relationships of butterflies of the tribe Acraeini (Lepidoptera, Nymphalidae, Heliconiinae) and the evolution of host plant use.

    abstract::The tribe Acraeini (Nymphalidae, Heliconiinae) is believed to comprise between one and seven genera, with the greatest diversity in Africa. The genera Abananote, Altinote, and Actinote (s. str.) are distributed in the Neotropics, while the genera Acraea, Bematistes, Miyana, and Pardopsis have a Palaeotropical distribu...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.11.024

    authors: Silva-Brandão KL,Wahlberg N,Francini RB,Azeredo-Espin AM,Brown KS Jr,Paluch M,Lees DC,Freitas AV

    更新日期:2008-02-01 00:00:00