Abstract:
:Drosophila pseudoobscura is a classic model system for the study of evolutionary genetics and genomics. Given this long-standing interest, many genome sequences have accumulated for D. pseudoobscura and closely related species D. persimilis, D. miranda, and D. lowei. To facilitate the exploration of genetic variation within species and comparative genomics across species, we present PseudoBase, a database that couples extensive publicly available genomic data with simple visualization and query tools via an intuitive graphical interface, amenable for use in both research and educational settings. All genetic variation (SNPs and indels) within the database is derived from the same workflow, so variants are easily comparable across data sets. Features include an embedded JBrowse interface, ability to pull out alignments of individual genes/regions, and batch access for gene lists. Here, we introduce PseudoBase, and we demonstrate how this resource facilitates use of extensive genomic data from flies of the Drosophila pseudoobscura subgroup.
journal_name
Fly (Austin)journal_title
Flyauthors
Korunes KL,Myers RB,Hardy R,Noor MAFdoi
10.1080/19336934.2020.1864201keywords:
["Drosophila","comparative genomics","database","genome browser"]subject
Has Abstractpub_date
2021-12-01 00:00:00pages
38-44issue
1eissn
1933-6934issn
1933-6942journal_volume
15pub_type
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