Fungal and bacterial microbiome dysbiosis and imbalance of trans-kingdom network in asthma.

Abstract:

Background:Fungal and bacterial microbiota play an important role in development of asthma. We aim to characterize airway microbiome (mycobiome, bacteriome) and functional genes in asthmatics and controls. Methods:Sputum microbiome of controls, untreated asthma patients and inhaled corticosteroid (ICS) receiving patients was detected using high throughput sequencing. Metagenomic sequencing was used to examine the functional genes of microbiome. Results:1. Mycobiome: α diversity was lower in untreated asthma group than that in controls. Mycobiome compositions differed among the three groups. Compared with controls, untreated asthma group has higher abundance of Wallemia, Mortierella and Fusarium. Compared with untreated asthma patients, ICS receiving patients has higher abundance of Fusarium and Mortierella, lower frequency of Wallemia, Alternaria and Aspergillus. 2. Bacteriome: α diversity was lower in untreated asthma group than that in controls. There are some overlaps of bacteriome compositions between controls and untreated asthma patients which were distinct from ICS receiving patients. Untreated asthma group has higher Streptococcus than controls. 3. Potential fungal and bacterial biomarkers of asthma: Trametes, Aspergillus, Streptococcus, Gemella, Neisseria, etc. 4. Correlation network: There are dense and homogenous correlations in controls but a dramatically unbalanced network in untreated asthma and ICS receiving patients, which suggested the existence of disease-specific inter-kingdom and intra-kingdom alterations. 5. Metagenomic analysis: functional pathways were associated with the status of asthma, microbiome and functional genes showed different correlations in different environment. Conclusion:We showed mycobiome and bacteriome dysbiosis in asthma featured by alterations in biodiversity, community composition, inter-kingdom and intra-kingdom network. We also observed several functional genes associated with asthma.

journal_name

Clin Transl Allergy

authors

Huang C,Yu Y,Du W,Liu Y,Dai R,Tang W,Wang P,Zhang C,Shi G

doi

10.1186/s13601-020-00345-8

subject

Has Abstract

pub_date

2020-10-22 00:00:00

pages

42

issn

2045-7022

pii

345

journal_volume

10

pub_type

杂志文章
  • Study of atopic multimorbidity in subjects with rhinitis using multiplex allergen component analysis.

    abstract:Background:Rhinitis is a common problem within the population. Many subjects with rhinitis also have atopic multimorbidity, such as asthma and eczema. The purpose of this investigation was to compare subjects with only rhinitis to those that have rhinitis, asthma and/or eczema in relation to immunoglobulin E (IgE) sens...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-020-0311-6

    authors: Blöndal V,Sundbom F,Borres MP,Högman M,Alving K,Malinovschi A,Janson C

    更新日期:2020-02-21 00:00:00

  • Dual exposure to smoking and household air pollution is associated with an increased risk of severe asthma in adults in Brazil.

    abstract:Background:The relationship between smoking, household pollution, dual exposure and severity of asthma in adults has not been sufficiently studied. We examined and compared the effects of cigarette smoking, domestic wood burning pollution and dual exposure (tobacco and wood burning) upon asthma severity in adults. Met...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-018-0235-6

    authors: Fernandes AGO,de Souza-Machado C,Pinheiro GP,de Oliva ST,Mota RCL,de Lima VB,Cruz CS,Chatkin JM,Cruz ÁA

    更新日期:2018-12-10 00:00:00

  • A meta-analysis of baseline characteristics in trials on mite allergen avoidance in asthmatics: room for improvement.

    abstract:Background:Evidence regarding the clinical effectiveness of mite allergen avoidance for the treatment of asthma is lacking. In previous meta-analyses on mite allergen control, the baseline data were not discussed in detail. This study updates and extends the existing Cochrane review by Gøtzsche and Johansen (Cochrane D...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-019-0306-3

    authors: van Boven FE,de Jong NW,Braunstahl GJ,Gerth van Wijk R,Arends LR

    更新日期:2020-01-06 00:00:00

  • Molecular approach to a patient's tailored diagnosis of the oral allergy syndrome.

    abstract::Oral allergy syndrome (OAS) is one of the most common IgE-mediated allergic reactions. It is characterized by a number of symptoms induced by the exposure of the oral and pharyngeal mucosa to allergenic proteins belonging to class 1 or to class 2 food allergens. OAS occurring when patients sensitized to pollens are ex...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-020-00329-8

    authors: Alessandri C,Ferrara R,Bernardi ML,Zennaro D,Tuppo L,Giangrieco I,Ricciardi T,Tamburrini M,Ciardiello MA,Mari A

    更新日期:2020-06-17 00:00:00

  • Association of elevated fractional exhaled nitric oxide concentration and blood eosinophil count with severe asthma exacerbations.

    abstract:Background:Blood eosinophil count (BEC) and fractional exhaled nitric oxide (FeNO) concentration are established biomarkers in asthma, associated particularly with the risk of exacerbations. We evaluated the relationship of BEC and FeNO as complementary and independent biomarkers of severe asthma exacerbations. Method...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-019-0282-7

    authors: Price DB,Bosnic-Anticevich S,Pavord ID,Roche N,Halpin DMG,Bjermer L,Usmani OS,Brusselle G,Ming SWY,Rastogi S

    更新日期:2019-08-21 00:00:00

  • Endotype-driven treatment in chronic upper airway diseases.

    abstract::Rhinitis and rhinosinusitis are the two major clinical entities of chronic upper airway disease. Chronic rhinosinusitis (CRS) and allergic rhinitis (AR) affect respectively up to 10 and 30% of the total population, hence being associated with an important socio-economic burden. Different phenotypes of rhinitis and CRS...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-017-0157-8

    authors: De Greve G,Hellings PW,Fokkens WJ,Pugin B,Steelant B,Seys SF

    更新日期:2017-07-12 00:00:00

  • Mapping hypersensitivity/allergic diseases in the International Classification of Diseases (ICD)-11: cross-linking terms and unmet needs.

    abstract:BACKGROUND:With the aim of actively contributing to the ongoing 11(th) International Classification of Diseases (ICD) revision, an international collaboration led by the European Academy of Allergy and Clinical Immunology (EAACI) has decided to revise the classification of hypersensitivity/allergic diseases and to vali...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-015-0063-x

    authors: Tanno LK,Calderon M,Papadopoulos NG,Demoly P,EAACI\/WAO Task force of a Global Classification of Hypersensitivity\/Allergic diseases.

    更新日期:2015-06-03 00:00:00

  • Protease resistance of food proteins: a mixed picture for predicting allergenicity but a useful tool for assessing exposure.

    abstract:Background:Susceptibility to pepsin digestion of candidate transgene products is regarded an important parameter in the weight-of-evidence approach for allergenicity risk assessment of genetically modified crops. It has been argued that protocols used for this assessment should better reflect physiological conditions e...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-018-0216-9

    authors: Akkerdaas J,Totis M,Barnett B,Bell E,Davis T,Edrington T,Glenn K,Graser G,Herman R,Knulst A,Ladics G,McClain S,Poulsen LK,Ranjan R,Rascle JB,Serrano H,Speijer D,Wang R,Pereira Mouriès L,Capt A,van Ree R

    更新日期:2018-08-10 00:00:00

  • Preventing food allergy: protocol for a rapid systematic review.

    abstract:BACKGROUND:The European Academy of Allergy and Clinical Immunology is developing guidelines about how to prevent and manage food allergy. As part of the guidelines development process, a systematic review is planned to examine published research about the prevention of food allergy. This systematic review is one of sev...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-3-10

    authors: de Silva D,Panesar SS,Thusu S,Rader T,Halken S,Muraro A,Sheikh A

    更新日期:2013-03-28 00:00:00

  • Distinct type 2-high inflammation associated molecular signatures of chronic rhinosinusitis with nasal polyps with comorbid asthma.

    abstract:Background:Patients with chronic rhinosinusitis with nasal polyps (CRSwNP) and comorbid asthma have more severe disease and are difficult to treat. However, the molecular endotypes associated with CRSwNP with comorbid asthma (CRSwNP + AS) are not clear. This study aimed to investigate the characteristics of type 2 infl...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-020-00332-z

    authors: Wang M,Bu X,Luan G,Lin L,Wang Y,Jin J,Zhang L,Wang C

    更新日期:2020-07-03 00:00:00

  • Correction to: Benefits and harm of systemic steroids for short- and long-term use in rhinitis and rhinosinusitis: an EAACI position paper.

    abstract::[This corrects the article DOI: 10.1186/s13601-019-0303-6.]. ...

    journal_title:Clinical and translational allergy

    pub_type: 已发布勘误

    doi:10.1186/s13601-020-00343-w

    authors: Hox V,Lourijsen E,Jordens A,Aasbjerg K,Agache I,Alobid I,Bachert C,Boussery K,Campo P,Fokkens W,Hellings P,Hopkins C,Klimek L,Mäkelä M,Mösges R,Mullol J,Pujols L,Rondon C,Rudenko M,Toppila-Salmi S,Scadding G,Sch

    更新日期:2020-09-28 00:00:00

  • Application of the adverse outcome pathway (AOP) concept to structure the available in vivo and in vitro mechanistic data for allergic sensitization to food proteins.

    abstract:BACKGROUND:The introduction of whole new foods in a population may lead to sensitization and food allergy. This constitutes a potential public health problem and a challenge to risk assessors and managers as the existing understanding of the pathophysiological processes and the currently available biological tools for ...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-017-0152-0

    authors: van Bilsen JHM,Sienkiewicz-Szłapka E,Lozano-Ojalvo D,Willemsen LEM,Antunes CM,Molina E,Smit JJ,Wróblewska B,Wichers HJ,Knol EF,Ladics GS,Pieters RHH,Denery-Papini S,Vissers YM,Bavaro SL,Larré C,Verhoeckx KCM,Roggen EL

    更新日期:2017-05-12 00:00:00

  • Human in vitro induced T regulatory cells and memory T cells share common demethylation of specific FOXP3 promoter region.

    abstract:BACKGROUND:The FOXP3 gene is the master regulator for T regulatory cells and is under tight DNA methylation control at the Treg specific demethylated region (TSDR) in its first intron. This said, methylation of its promoter region, the significance of which is unknown, has also been associated with various immune-relat...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-015-0079-2

    authors: Bégin P,Schulze J,Baron U,Olek S,Bauer RN,Passerini L,Baccheta R,Nadeau KC

    更新日期:2015-10-20 00:00:00

  • Relationship between vitamin D and chronic spontaneous urticaria: a systematic review.

    abstract:Background:Vitamin D has been reported to be associated with many allergic diseases. There are a limited number of the studies of vitamin D supplementation in patients with chronic spontaneous urticaria (CSU). This study aims to study the relationship between vitamin D and CSU in terms of serum vitamin D levels, and th...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-018-0234-7

    authors: Tuchinda P,Kulthanan K,Chularojanamontri L,Arunkajohnsak S,Sriussadaporn S

    更新日期:2018-12-04 00:00:00

  • Characterization of a subgroup of non-type 2 asthma with cow's milk hypersensitivity in young subjects.

    abstract:Background:Asthma with atopy is often characterized by type 2 inflammation but less progress has been made in defining non-type 2 asthma. We have previously identified a subgroup of young non-atopic asthmatics with perceived food hypersensitivity and poor asthma control. Objective:Our aim was to further characterize t...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-019-0250-2

    authors: Tsolakis N,Nordvall L,Janson C,Rydell N,Malinovschi A,Alving K

    更新日期:2019-02-22 00:00:00

  • The placebo effect in allergen-specific immunotherapy trials.

    abstract:BACKGROUND:Double-blind, placebo-controlled (DBPC) trials are the gold standard for demonstrating clinical efficacy and tolerability. The placebo effect, although an important feature in placebo-controlled studies, has never been systematically investigated in allergen-specific immunotherapy (SIT) studies. This study w...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-3-42

    authors: Narkus A,Lehnigk U,Haefner D,Klinger R,Pfaar O,Worm M

    更新日期:2013-12-21 00:00:00

  • Food allergy in a child with de novo KAT6A mutation.

    abstract::Crying combined with miscellaneous gastrointestinal symptoms are typical symptoms of infant with food allergy, but are also common among children with abnormal neurological development. Mutations in KAT6A gene is known to cause a syndrome characterized by developmental delay, hypotonia, cardiac defects, microcephaly, ...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-017-0155-x

    authors: Elenius V,Lähdesmäki T,Hietala M,Jartti T

    更新日期:2017-06-22 00:00:00

  • Sesame oleosins are minor allergens.

    abstract:Background:In daily practice, one-third of sesame allergic patients, confirmed by clinical history or food challenge, do not show any detectable specific IgE using current diagnostics. Currently used sesame extracts are water-based and therefore lacking hydrophobic proteins like oleosins. Oleosins, the stabilizer of li...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-019-0271-x

    authors: Ehlers AM,Rossnagel M,Brix B,Blankestijn MA,Le TM,Suer W,Otten HG,Knulst AC

    更新日期:2019-06-28 00:00:00

  • Protocol for a double-blind randomised controlled trial of low dose intradermal grass pollen immunotherapy versus a histamine control on symptoms and medication use in adults with seasonal allergic rhinitis (PollenLITE).

    abstract:BACKGROUND:Subcutaneous immunotherapy with high dose grass pollen (typically microgram quantities) was first described over 100 years ago. This treatment suppresses allergen-induced cutaneous late responses, with lesser effects on early responses. We previously reported that repeated 2-weekly intradermal injections of ...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-3-27

    authors: Slovick A,Douiri A,Kelly J,Guerra A,Muir R,Tsioulos K,Murphy C,Shamji MH,Ying S,Durham SR,Till SJ

    更新日期:2013-08-21 00:00:00

  • Allergic rhinitis in northern vietnam: increased risk of urban living according to a large population survey.

    abstract:BACKGROUND:Little is known about prevalence and risk factors of allergic rhinitis and chronic nasal symptoms among adults in Vietnam. We aimed to estimate the prevalence, risk factor patterns and co-morbidities of allergic rhinitis and chronic nasal symptoms in one urban and one rural area in northern Vietnam. METHODS...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-1-7

    authors: Lâm HT,Văn T Tng N,Ekerljung L,Rönmark E,Lundbäck B

    更新日期:2011-08-11 00:00:00

  • Indoleamine 2,3-dioxygenase expression in patients with allergic rhinitis: a case-control study.

    abstract:BACKGROUND:Indoleamine 2,3-dioxygenase (IDO) is a tryptophan catalyzing enzyme. It has been suggested that it has a role in lower airway allergic inflammations, but its role in allergic rhinitis has not been investigated. OBJECTIVE:Our aim was to evaluate the expression of IDO in the nasal mucosa of allergic rhinitis ...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-1-17

    authors: Luukkainen A,Karjalainen J,Honkanen T,Lehtonen M,Paavonen T,Toppila-Salmi S

    更新日期:2011-12-12 00:00:00

  • Eosinophilic disorders: evaluation of current classification and diagnostic criteria, proposal of a practical diagnostic algorithm.

    abstract::Eosinophilic disorders represent a group of pathologic conditions with highly heterogeneous pathophysiology and clinical presentation and variable prognosis, ranging from asymptomatic or mild, to severe and complex cases, with fatal outcome. Interest in this group of disorders has increased during the last two decades...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-019-0277-4

    authors: Leru PM

    更新日期:2019-07-25 00:00:00

  • Having concomitant asthma phenotypes is common and independently relates to poor lung function in NHANES 2007-2012.

    abstract:Background:Evidence for distinct asthma phenotypes and their overlap is becoming increasingly relevant to identify personalized and targeted therapeutic strategies. In this study, we aimed to describe the overlap of five commonly reported asthma phenotypes in US adults with current asthma and assess its association wit...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-018-0201-3

    authors: Amaral R,Fonseca JA,Jacinto T,Pereira AM,Malinovschi A,Janson C,Alving K

    更新日期:2018-05-04 00:00:00

  • Cosmetics for neonates and infants: haptens in products' composition.

    abstract::Cosmetics and skin care products for neonates and infants are considered as ''hypoallergenic'', "tested" or ''safe''. Nevertheless, the prevalence of haptens in these products is a matter of concern, since allergic contact dermatitis in children is gaining an importance. We aimed to assess the prevalence of haptens in...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-019-0257-8

    authors: Dumycz K,Kunkiel K,Feleszko W

    更新日期:2019-03-08 00:00:00

  • Sinus computed tomography predicts clinical response to corticosteroids in chronic rhinosinusitis with nasal polyps.

    abstract:Background:Chronic rhinosinusitis with nasal polyps (CRSwNP) is a heterogeneous inflammatory disease usually characterized by chronic eosinophilia in the sinonasal mucosa, which often requires glucocorticoid (GC) therapy. However, the therapeutic response varies markedly between individuals. The objective of this study...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-018-0211-1

    authors: Hong H,Wang D,Tan KS,Zheng R,Chen F,Gao W,He H,Shi J,Fan Y,Yang Q,Sun Y

    更新日期:2018-07-02 00:00:00

  • Living with severe allergy: an Anaphylaxis Campaign national survey of young people.

    abstract:UNLABELLED: BACKGROUND:The transition to adulthood can be particularly challenging for young people with severe allergies, who must learn to balance personal safety with independent living. Information and support for young people and their families are crucial to successfully managing this transition. We sought to: g...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-3-2

    authors: Worth A,Regent L,Levy M,Ledford C,East M,Sheikh A

    更新日期:2013-01-22 00:00:00

  • Lung function in severe pediatric asthma: a longitudinal study in children and adolescents in Brazil.

    abstract:Background:In severe asthma, high doses of inhaled corticosteroids (ICS) are used in order to achieve clinical and functional control. This study aimed to evaluate lung function in outpatients (children and adolescents) with severe asthma in Brazil, all of whom were treated with high doses of ICS. We evaluated all spir...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/s13601-017-0183-6

    authors: Versiani Nunes Pinheiro de Queiroz M,Gonçalves Alvim C,Cruz ÁA,de Lima Belizário Facury Lasmar LM

    更新日期:2017-12-15 00:00:00

  • Categorization of allergic disorders in the new World Health Organization International Classification of Diseases.

    abstract:BACKGROUND:Although efforts to improve the classification of hypersensitivity/allergic diseases have been made, they have not been considered a top-level category in the International Classification of Diseases (ICD)-10 and still are not in the ICD-11 beta phase linearization. ICD-10 is the most used classification sys...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章

    doi:10.1186/2045-7022-4-42

    authors: Tanno LK,Calderon MA,Goldberg BJ,Akdis CA,Papadopoulos NG,Demoly P

    更新日期:2014-11-28 00:00:00

  • Erratum to: Scaling up strategies of the chronic respiratory disease programme of the European Innovation Partnership on Active and Healthy Ageing (Action Plan B3: Area 5).

    abstract::[This corrects the article DOI: 10.1186/s13601-016-0116-9.]. ...

    journal_title:Clinical and translational allergy

    pub_type: 已发布勘误

    doi:10.1186/s13601-016-0135-6

    authors: Bousquet J,Farrell J,Crooks G,Hellings P,Bel EH,Bewick M,Chavannes NH,de Sousa JC,Cruz AA,Haahtela T,Joos G,Khaltaev N,Malva J,Muraro A,Nogues M,Palkonen S,Pedersen S,Robalo-Cordeiro C,Samolinski B,Strandberg T,Va

    更新日期:2017-02-20 00:00:00

  • European Summit on the Prevention and Self-Management of Chronic Respiratory Diseases: report of the European Union Parliament Summit (29 March 2017).

    abstract::On March 29, 2017, a European Summit on the Prevention and Self-Management of Chronic Respiratory Diseases (CRD) was organized by the European Forum for Research and Education in Allergy and Airway Diseases. The event took place in the European Parliament of Brussels and was hosted by MEP David Borrelli and MEP Sirpa ...

    journal_title:Clinical and translational allergy

    pub_type: 杂志文章,评审

    doi:10.1186/s13601-017-0186-3

    authors: Hellings PW,Borrelli D,Pietikainen S,Agache I,Akdis C,Bachert C,Bewick M,Botjes E,Constantinidis J,Fokkens W,Haahtela T,Hopkins C,Illario M,Joos G,Lund V,Muraro A,Pugin B,Seys S,Somekh D,Stjärne P,Valiulis A,Val

    更新日期:2017-12-27 00:00:00