Cell-specific expression of lung disease risk-related genes in the human small airway epithelium.

Abstract:

BACKGROUND:The human small airway epithelium (SAE) plays a central role in the early events in the pathogenesis of most inherited and acquired lung disorders. Little is known about the molecular phenotypes of the specific cell populations comprising the SAE in humans, and the contribution of SAE specific cell populations to the risk for lung diseases. METHODS:Drop-seq single-cell RNA-sequencing was used to characterize the transcriptome of single cells from human SAE of nonsmokers and smokers by bronchoscopic brushing. RESULTS:Eleven distinct cell populations were identified, including major and rare epithelial cells, and immune/inflammatory cells. There was cell type-specific expression of genes relevant to the risk of the inherited pulmonary disorders, genes associated with risk of chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis and (non-mutated) driver genes for lung cancers. Cigarette smoking significantly altered the cell type-specific transcriptomes and disease risk-related genes. CONCLUSIONS:This data provides new insights into the possible contribution of specific lung cells to the pathogenesis of lung disorders.

journal_name

Respir Res

journal_title

Respiratory research

authors

Zuo WL,Rostami MR,Shenoy SA,LeBlanc MG,Salit J,Strulovici-Barel Y,O'Beirne SL,Kaner RJ,Leopold PL,Mezey JG,Schymeinsky J,Quast K,Visvanathan S,Fine JS,Thomas MJ,Crystal RG

doi

10.1186/s12931-020-01442-9

subject

Has Abstract

pub_date

2020-07-29 00:00:00

pages

200

issue

1

eissn

1465-9921

issn

1465-993X

pii

10.1186/s12931-020-01442-9

journal_volume

21

pub_type

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