Abstract:
:We present Neighbor-Net, a distance based method for constructing phylogenetic networks that is based on the Neighbor-Joining (NJ) algorithm of Saitou and Nei. Neighbor-Net provides a snapshot of the data that can guide more detailed analysis. Unlike split decomposition, Neighbor-Net scales well and can quickly produce detailed and informative networks for several hundred taxa. We illustrate the method by reanalyzing three published data sets: a collection of 110 highly recombinant Salmonella multi-locus sequence typing sequences, the 135 "African Eve" human mitochondrial sequences published by Vigilant et al., and a collection of 12 Archeal chaperonin sequences demonstrating strong evidence for gene conversion. Neighbor-Net is available as part of the SplitsTree4 software package.
journal_name
Mol Biol Evoljournal_title
Molecular biology and evolutionauthors
Bryant D,Moulton Vdoi
10.1093/molbev/msh018subject
Has Abstractpub_date
2004-02-01 00:00:00pages
255-65issue
2eissn
0737-4038issn
1537-1719pii
msh018journal_volume
21pub_type
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