Rapid identification of flavivirus using the polymerase chain reaction.

Abstract:

:A rapid and accurate detection and identification system was developed for flaviviruses that makes use of reverse transcription-polymerase chain reaction (RT-PCR). A primer pair (YF-1 and YF-3), which corresponds to the highly conserved sequence at 3' noncoding region among flaviviruses, was useful for identification of mosquito-borne flaviviruses. Nine sets of species specific primer pairs were also selected to identify and distinguish species, i.e., yellow fever, West Nile, Murray Valley encephalitis, Japanese encephalitis, St. Louis encephalitis and dengue type 1 to 4 viruses. This method required only two hours for completion using infected culture fluid, thus facilitating rapid identification of mosquito-borne flavivirus species.

journal_name

J Virol Methods

authors

Tanaka M

doi

10.1016/0166-0934(93)90020-r

subject

Has Abstract

pub_date

1993-03-01 00:00:00

pages

311-22

issue

3

eissn

0166-0934

issn

1879-0984

pii

0166-0934(93)90020-R

journal_volume

41

pub_type

杂志文章
  • Simultaneous detection of enterovirus 70 and coxsackievirus A24 variant by multiplex real-time RT-PCR using an internal control.

    abstract::Epidemics of acute hemorrhagic conjunctivitis are always explosive and extensive, and have been recognized as a serious international public health problem. Enterovirus 70 and coxsackievirus A24 variant have been identified as the major etiological agents in acute hemorrhagic conjunctivitis outbreaks worldwide. A nove...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.02.022

    authors: Xiao XL,Wu H,Li YJ,Li HF,He YQ,Chen G,Zhang JW,Yang H,Li XF,Yang XQ,Yu YG

    更新日期:2009-07-01 00:00:00

  • Enhanced and efficient detection of virus-driven cytokine expression by human NK and T cells.

    abstract::Cutting edge immune monitoring techniques increasingly measure multiple functional outputs for various cell types, such as intracellular cytokine staining (ICS) assays that measure cytokines expressed by T cells. To date, however, there is no precise method to measure virus-specific cytokine production by both T cells...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2014.01.003

    authors: Pattacini L,Murnane PM,Fluharty TR,Katabira E,De Rosa SC,Baeten JM,Lund JM

    更新日期:2014-04-01 00:00:00

  • A fluorescence-based quantitative PCR method for investigation of pseudorabies virus latency.

    abstract::A quantitative PCR method was developed in order to quantitate the number of copies of Pseudorabies virus (PRV) genome present in tissues from infected pigs. The method is based on the use of an internal standard that differs from the target DNA by a deletion of ten base pairs, and that is co-amplified with the target...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(96)02072-1

    authors: Thiery R,Pannetier C,Rziha HJ,Jestin A

    更新日期:1996-09-01 00:00:00

  • Madin-Darby bovine kidney (MDBK) cells are a suitable cell line for the propagation and study of the bovine poxvirus lumpy skin disease virus.

    abstract::Lumpy skin disease virus (LSDV) is a poxvirus that causes systemic disease in cattle, resulting in substantial economic loss to affected communities. LSDV is a rapidly emerging pathogen of growing global concern that recently spread from Africa and the Middle East into Europe and Asia, impacting the cattle population ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2020.113943

    authors: Fay PC,Cook CG,Wijesiriwardana N,Tore G,Comtet L,Carpentier A,Shih B,Freimanis G,Haga IR,Beard PM

    更新日期:2020-11-01 00:00:00

  • High yield expression and purification of Chikungunya virus E2 recombinant protein and its evaluation for serodiagnosis.

    abstract::Disease caused by Chikungunya virus (CHIKV) is clinically characterized by sudden-onset of fever and severe arthralgia, which may persist for weeks, months, or years after acute phase of the infection. CHIKV is spreading globally; in India it first appeared in the 1960s followed by a quiescent period and then a full-b...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2016.05.003

    authors: Verma A,Chandele A,Nayak K,Kaja MK,Arulandu A,Lodha R,Ray P

    更新日期:2016-09-01 00:00:00

  • Rapid synchronization of hepatitis C virus infection by magnetic adsorption.

    abstract::Hepatitis C virus (HCV) entry into target cells is thought to be a multistep process involving several cellular factors. However, their precise role during virus entry is unclear. Investigation of the mechanisms of HCV entry, such as the order of intervention by the cellular receptors, requires synchronizing infection...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2008.11.015

    authors: Vieyres G,Angus AG,Haberstroh A,Baumert TF,Dubuisson J,Patel AH

    更新日期:2009-04-01 00:00:00

  • A multiplex real-time PCR assay for the detection and differentiation of the newly emerged porcine circovirus type 3 and continuously evolving type 2 strains in the United States.

    abstract::A multiplex quantitative real-time polymerase chain reaction (mqPCR) assay was developed and validated for the detection and differentiation of porcine circovirus type 3 (PCV3) and type 2 (PCV2) strains. The assay coverage was 97.9% (184/188) for PCV3 and 99.1% (1889/1907) for PCV2 sequences that were available from t...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2019.03.011

    authors: Wang Y,Feng Y,Zheng W,Noll L,Porter E,Potter M,Cino G,Peddireddi L,Liu X,Anderson G,Bai J

    更新日期:2019-07-01 00:00:00

  • Generation of a DNA microarray for determination of E6 natural variants of human papillomavirus type 16.

    abstract::Infection with high-risk types of human papillomavirus (HPV) is necessary for the development of cervical cancer. However, the majority of the HPV infections are efficiently cleared by the immune system and only a minority persist and induce the development of malignant lesions. Several studies provided evidence that ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2004.02.018

    authors: Gemignani F,Landi S,Chabrier A,Smet A,Zehbe I,Canzian F,Tommasino M

    更新日期:2004-08-01 00:00:00

  • Characterisation of visna virus reverse transcriptase: a micro scale reverse transcriptase assay adapted for use with an automated cell harvester.

    abstract::The reverse transcriptase of the sheep lentivirus visna/maedi virus has been characterised. Optima for magnesium ion concentration (5-10 mM), potassium ion concentration (150 mM) and pH (8.25) for this enzyme are very similar to those previously described for the human immunodeficiency viruses. The assay used for this...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(92)90144-3

    authors: Sargan DR,Watt NJ,McConnell I

    更新日期:1992-02-01 00:00:00

  • Immunocapture and direct binding loop mediated isothermal amplification simplify molecular diagnosis of Cyprinid herpesvirus-3.

    abstract::Loop mediated isothermal amplification (LAMP) assay is used for rapid diagnosis of Cyprinid herpesvirus-3, formerly designated koi herpesvirus (KHV), with comparable sensitivity to PCR. To reduce the time required for the LAMP assay, an immunocapture (IC) and direct binding (DB) techniques were developed to exclude th...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2009.07.021

    authors: Soliman H,El-Matbouli M

    更新日期:2009-12-01 00:00:00

  • Expression and the antigenicity of recombinant coat proteins of tungro viruses expressed in Escherichia coli.

    abstract::Rice tungro disease (RTD) is a recurring disease affecting rice farming especially in the South and Southeast Asia. The disease is commonly diagnosed by visual observation of the symptoms on diseased plants in paddy fields and by polymerase chain reaction (PCR). However, visual observation is unreliable and PCR can be...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2016.12.001

    authors: Yee SF,Chu CH,Poili E,Sum MSH

    更新日期:2017-02-01 00:00:00

  • A comparison of antibody capture radio- and enzyme immunoassays with immunofluorescence for detecting IgM antibody in infants with congenital rubella.

    abstract::IgM antibody capture radioimmunoassay (MACRIA) and enzyme immunoassay (MACEIA) were compared with immunofluorescence (IF) for detecting specific IgM antibody in 99 sera from 76 infants with confirmed congenital rubella, and 61 sera from a comparative group of 59 infants who had miscellaneous abnormalities but in whom ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(82)90055-6

    authors: Chantler S,Evans CJ,Mortimer PP,Cradock-Watson JE,Ridehalgh MK

    更新日期:1982-08-01 00:00:00

  • Evaluation of the automatic editing tool RECall for HIV-1 pol and V3 loop sequences.

    abstract::Genotypic drug resistance testing is routine practice in HIV-1 clinical care. The visual interpretation of sequencing electropherograms is labour-intensive and subject to intra- and inter-assay variability because decisions are based on operators' judgments. In this study the performance of the automatic editing tool ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2013.05.017

    authors: Vinken L,Megens S,Schrooten Y,Vandamme AM,Van Laethem K

    更新日期:2013-10-01 00:00:00

  • Evaluation of SYBR Green real time PCR for detecting SARS-CoV-2 from clinical samples.

    abstract::The pandemic caused by SARS-CoV-2 has triggered an extraordinary collapse of healthcare systems and hundred thousand of deaths worldwide. Following the declaration of the outbreak as a Public Health Emergency of International Concern by the World Health Organization (WHO) on January 30th, 2020, it has become imperativ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2020.114035

    authors: Pereira-Gómez M,Fajardo Á,Echeverría N,López-Tort F,Perbolianachis P,Costábile A,Aldunate F,Moreno P,Moratorio G

    更新日期:2020-12-04 00:00:00

  • Preparation and evaluation of a recombinant Rift Valley fever virus N protein for the detection of IgG and IgM antibodies in humans and animals by indirect ELISA.

    abstract::This paper describes the cloning, sequencing and bacterial expression of the N protein of the Rift Valley fever virus (RVFV) ZIM688/78 isolate and its evaluation in indirect ELISAs (I-ELISA) for the detection of IgM and IgG antibodies in human and sheep sera. Sera used for the evaluation were from 106 laboratory worke...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2006.11.005

    authors: Jansen van Vuren P,Potgieter AC,Paweska JT,van Dijk AA

    更新日期:2007-03-01 00:00:00

  • An immunochromatography assay for rapid antemortem diagnosis of dogs suspected to have canine distemper.

    abstract::A new assay was developed for rapid and antemortem diagnosis of canine distemper (CD). This immunochromatography (IC)-based assay, which employs two monoclonal anti-CDV antibodies, was compared with nested PCR. When serial dilutions of purified CDV were tested, the CDV detection limits of the nested PCR and IC assays ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2007.09.006

    authors: An DJ,Kim TY,Song DS,Kang BK,Park BK

    更新日期:2008-02-01 00:00:00

  • Comparison of four non-radioactive and 35S-based methods for the detection of human papillomavirus DNA by in situ hybridization.

    abstract::Human papillomavirus DNA was detected in 40 condylomatous lesions of various sites (vulva, cervix, larynx, penis and anus) by in situ hybridization using 35S-labelled probes and four non-radioactive probes to compare the various sensitivities of these techniques on the same material (formalin-fixed and paraffin-embedd...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(91)90025-u

    authors: Clavel C,Binninger I,Boutterin MC,Polette M,Birembaut P

    更新日期:1991-08-01 00:00:00

  • Detection of adenovirus by rapid 24-well plate centrifugation and conventional cell culture with dexamethasone.

    abstract::Two methods for rapid detection of adenovirus were tested: (i) 24-well plate centrifugation followed by staining with a monoclonal antibody after incubation for 24 h and 48 h, and (ii) pretreatment of A549 cells used in conventional cell culture and 24-well plate centrifugation with 10(-5)M dexamethasone. Twenty-seven...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(88)90144-9

    authors: Woods GL,Yamamoto M,Young A

    更新日期:1988-06-01 00:00:00

  • Generation of a human hepatoma cell line supporting efficient replication of a lamivudine resistant hepatitis B virus.

    abstract::Emergence of lamivudine (LAM) resistance causes treatment failure in patients with chronic hepatitis B and compromise the efficacy of subsequent salvage therapies with other nucleot(s)ide analogs (NAs). Establishment of cell-based assays supporting LAM-resistant hepatitis B virus (HBV) replication will not only provid...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2014.02.008

    authors: Zhang Y,Zhang Y,Kang Y,Wang J,Liu H,Zhu H,Qin Y,Mao R,Lin X,Lu M,Zhang J

    更新日期:2014-06-01 00:00:00

  • Non-structural protein 1 (NS1) antibody-based assays to differentiate West Nile (WN) virus from Japanese encephalitis virus infections in horses: effects of WN virus NS1 antibodies induced by inactivated WN vaccine.

    abstract::Antibodies to non-structural protein 1 (NS1) of West Nile virus (WNV) have been used to differentiate WNV infection from infection by serologically cross-reactive flaviviruses, including Japanese encephalitis virus (JEV), in horses. However, since the inactivated West Nile (WN) vaccine has been reported to induce NS1 ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2010.10.012

    authors: Kitai Y,Kondo T,Konishi E

    更新日期:2011-01-01 00:00:00

  • Development and optimization of plaque assays for rat coronaviruses.

    abstract::Plaque assays under Sephadex or agarose overlays are described for rat coronaviruses (RCVs) grown in L2 mouse fibroblasts. A plaque assay using Sephadex was simple; however, viable plaques could not be collected for propagation, and fixation was necessary before evaluation. Plaque formation under agarose was optimized...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(93)90089-a

    authors: Gaertner DJ,Winograd DF,Compton SR,Paturzo FX,Smith AL

    更新日期:1993-06-01 00:00:00

  • Purification of adenovirus hexon by high performance liquid chromatography.

    abstract::Hexon is the major structural protein of adenovirus, and has significance in studies of virus structure and function, vaccine development, and immunodiagnosis. We describe a simple, single-step, anion-exchange high performance liquid chromatography (HPLC) method for the high yield purification of hexon. Purity of the ...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(87)90131-5

    authors: Siegel SA,Hutchins JE,Witt DJ

    更新日期:1987-09-01 00:00:00

  • Production and characterization of monoclonal antibodies against binary ethylenimine inactivated Nipah virus.

    abstract::Nipah virus, a zoonotic paramyxovirus which emerged recently was chemically inactivated using binary ethylenimine (BEI). The inactivated virus was concentrated and purified by sucrose gradient centrifugation. The gradient fractions were examined by electron microscopy and Western immunoblot, and gradient fraction cont...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2005.09.005

    authors: Berhane Y,Berry JD,Ranadheera C,Marszal P,Nicolas B,Yuan X,Czub M,Weingartl H

    更新日期:2006-03-01 00:00:00

  • Comparison of conventional RT-PCR, reverse-transcription loop-mediated isothermal amplification, and SYBR green I-based real-time RT-PCR in the rapid detection of bovine viral diarrhea virus nucleotide in contaminated commercial bovine sera batches.

    abstract::Bovine viral diarrhea virus (BVDV) can contaminate biological products produced in bovine or porcine cells or manufactured using bovine sera. A rapid, specific, sensitive, and practical method of detecting BVDV in bio-products is needed. The purpose of this study was to compare three assays with respect to their abili...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2014.05.020

    authors: Zhang SQ,Tan B,Li P,Wang FX,Guo L,Yang Y,Sun N,Zhu HW,Wen YJ,Cheng SP

    更新日期:2014-10-01 00:00:00

  • New Coxsackievirus 2Apro and 3Cpro protease antibodies for virus detection and discovery of pathogenic mechanisms.

    abstract::Enteroviruses (EVs), such as the Coxsackie B-viruses (CVBs), are common human pathogens, which can cause severe diseases including meningitis, myocarditis and neonatal sepsis. EVs encode two proteases (2Apro and 3Cpro), which perform the proteolytic cleavage of the CVB polyprotein and also cleave host cell proteins to...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2018.02.001

    authors: Laitinen OH,Svedin E,Kapell S,Hankaniemi MM,Larsson PG,Domsgen E,Stone VM,Määttä JAE,Hyöty H,Hytönen VP,Flodström-Tullberg M

    更新日期:2018-05-01 00:00:00

  • Strategies for detection of transfusion-transmitted viruses eluding identification by conventional serologic tests. II. Detection of host DNA in human plasmas with elevated alanine aminotransferase.

    abstract::As a prelude to the development of nucleic acid probes specific for non-A, non-B hepatitis virus(es) (NANBV), plasmas with alanine aminotransferase levels greater than or equal to 110 IU were assayed for DNA by a radioimmunoassay. Approximately 50% of such plasmas are expected to contain NANBV. One-hundred and seventy...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(84)90042-9

    authors: Neurath AR,Strick N,Miller K,Waldman AA

    更新日期:1984-02-01 00:00:00

  • Evaluation of a semi-automatic radioimmunoassay for hepatitis B surface antigen (HBsAg).

    abstract::The recently developed semi-automatic Hepatube system was evaluated in comparison to another radioimmunoassay for the detection of hepatitis B surface antigen (HBsAg), the manual Ausria II-125 test. After incubation of serum in anti-HBs coated tubes, the Hepatube system uses a machine to wash the tubes and to add trac...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/0166-0934(83)90074-5

    authors: de Vries J,Kruining J,Heijtink RA

    更新日期:1983-02-01 00:00:00

  • Development of an immunochromatographic strip for rapid detection of antibodies against classical swine fever virus.

    abstract::The genes encoding the Erns and E2 antigen epitopes of classical swine fever virus (CSFV) were expressed as a chimeric protein in Escherichia coli BL21 by pET expression system. The antigenicity of the expressed protein CnC2 was identified by indirect enzyme-linked immunoabsorbant assay (ELISA) and immunoblot with ant...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2011.12.006

    authors: Li X,Wang L,Shi X,Zhao D,Yang J,Yang S,Zhang G

    更新日期:2012-03-01 00:00:00

  • A comparison of PCR assays for beak and feather disease virus and high resolution melt (HRM) curve analysis of replicase associated protein and capsid genes.

    abstract::Beak and feather disease virus (BFDV) threatens a wide range of endangered psittacine birds worldwide. In this study, we assessed a novel PCR assay and genetic screening method using high-resolution melt (HRM) curve analysis for BFDV targeting the capsid (Cap) gene (HRM-Cap) alongside conventional PCR detection as wel...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2016.08.015

    authors: Das S,Sarker S,Ghorashi SA,Forwood JK,Raidal SR

    更新日期:2016-11-01 00:00:00

  • Serotype-specific detection of adeno-associated virus during laboratory preparation.

    abstract::Adeno-associated virus (AAV) is a small single-stranded DNA member of the family Parvoviradae with at least eight recognized human serotypes, several of which are being studied as candidate vectors for gene therapy. When multiple serotypes are handled in the same laboratory, it is critical to know the serotype of a sa...

    journal_title:Journal of virological methods

    pub_type: 杂志文章

    doi:10.1016/j.jviromet.2006.05.012

    authors: Mitchell DA,O'Donnell J,Hare JT,Chapman MS

    更新日期:2006-09-01 00:00:00