Using the EM algorithm to weight data sets of unknown precision when modelling fish stocks.

Abstract:

:Stocks of commercial fish are often modelled using sampling data of various types, of unknown precision, and from various sources assumed independent. We want each set to contribute to estimates of the parameters in relation to its precision and goodness of fit with the model. Iterative re-weighting of the sets is proposed for linear models until the weight of each set is found to be proportional to (relative weighting) or equal to (absolute weighting) the set-specific residual invariances resulting from a generalised least squares fit. Formulae for the residual variances are put forward involving fractional allocation of degrees of freedom depending on the numbers of independent observations in each set, the numbers of sets contributing to the estimate of each parameter, and the number of weights estimated. To illustrate the procedure, numbers of the 1984 year-class of North Sea cod (a) landed commercially each year, and (b) caught per unit of trawling time by an annual groundfish survey are modelled as a function of age to estimate total mortality, Z, relative catching power of the two fishing methods, and relative precision of the two sets of observations as indices of stock abundance. It was found that the survey abundance indices displayed residual variance about 29 times higher than that of the annual landings.

journal_name

Math Biosci

journal_title

Mathematical biosciences

authors

Cotter AJ,Buckland ST

doi

10.1016/j.mbs.2004.03.001

subject

Has Abstract

pub_date

2004-07-01 00:00:00

pages

1-7

issue

1

eissn

0025-5564

issn

1879-3134

pii

S0025556404000914

journal_volume

190

pub_type

杂志文章
  • Which facilitates the evolution of cooperation more, retaliation or persistence?

    abstract::The existence of cooperation in this world is a mysterious phenomenon. One of the mechanisms that explain the evolution of cooperation is repeated interaction. If interactions between the same individuals repeat and individuals cooperate conditionally, cooperation can evolve. A previous study pointed out that if indiv...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2017.04.002

    authors: Kurokawa S

    更新日期:2017-07-01 00:00:00

  • An integrated modeling-experimental strategy for the analysis of metabolic pathways.

    abstract::An inherent problem in studying the behavior of a metabolic pathway is the impossibility of developing a complete, detailed model that includes all the cellular processes that have an impact on the set of fluxes in such a pathway. Lacking this, one requires some means of modeling the interactions between a metabolic p...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(90)90049-5

    authors: Schlosser PM,Bailey JE

    更新日期:1990-06-01 00:00:00

  • Crossover in spreading behavior due to memory in population dynamics.

    abstract::The reaction-diffusion equation is one of the possible ways for modeling animal movement, where the reactive part stands for the population growth and the diffusive part for random dispersal of the population. However, a reaction-diffusion model may not represent all aspects of the spatial dynamics, because of the exi...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2020.108346

    authors: Oliveira KA,Berbert JM

    更新日期:2020-06-01 00:00:00

  • Estimation of vaccine efficacy from epidemics of acute infectious agents under vaccine-related heterogeneity.

    abstract::A stochastic epidemic model is formulated for the study of the protective effects of vaccination in a population that is stratified by vaccine-related factors. The epidemic model is transformed into a counting process, and then martingale-based methods are used to provide estimators of vaccine efficacy and their varia...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(93)90028-9

    authors: Longini IM Jr,Halloran ME,Haber M

    更新日期:1993-09-01 00:00:00

  • Permanence of sparse catalytic networks.

    abstract::Some global dynamical properties of catalytic networks, in particular permanence, are closely related with a directed graph representing the differential equation. It can be shown that for every directed graph with a Hamiltonian circuit there is a choice of rate constants such that the system is permanent. On the othe...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(95)00033-x

    authors: Stadler PF,Schuster P

    更新日期:1996-01-15 00:00:00

  • A model of a syntrophic relationship between two microbial species in a chemostat including maintenance.

    abstract::Many microbial ecosystems can be seen as microbial 'food chains' where the different reaction steps can be seen as such: the waste products of the organisms at a given reaction step are consumed by organisms at the next reaction step. In the present paper we study a model of a two-step biological reaction with feedbac...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.02.008

    authors: Sari T,Harmand J

    更新日期:2016-05-01 00:00:00

  • Learning of oscillatory correlated patterns in a cortical network by a STDP-based learning rule.

    abstract::In this paper, we propose an iterative learning rule that allows the imprinting of correlated oscillatory patterns in a model of the hippocampus able to work as an associative memory for oscillatory spatio-temporal patterns. We analyze the dynamics in the Fourier domain, showing how the network selectively amplify or ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.10.001

    authors: Marinaro M,Scarpetta S,Yoshioka M

    更新日期:2007-06-01 00:00:00

  • A mechanoreceptor model for rapidly and slowly adapting afferents subjected to periodic vibratory stimuli.

    abstract::A simple model of Freeman and Johnson on cutaneous mechanoreceptors is modified by introducing mechanisms for hyperexcitation and refractoriness. These lead to significant improvements in the match between the neural and model data. ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(94)00083-c

    authors: Slavík P,Bell J

    更新日期:1995-11-01 00:00:00

  • Heterogeneity in dynamic species abundance models: the selective effect of extinction processes.

    abstract::There is often large variation in traits across the species of a community. In particular, variation in life history traits affecting population dynamics is likely to affect the species abundance distribution. Applying a dynamic and heterogeneous species abundance model we study how differences in extinction time for ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.06.002

    authors: Engen S

    更新日期:2007-12-01 00:00:00

  • Modeling dynamic contraction of muscle using the cross-bridge theory.

    abstract::During normal, voluntary movements, skeletal muscles typically contract in a highly dynamic manner; the length of the muscle and the speed of contraction change continuously. In this study, we present an approach to predict the accurate behavior of muscles for such dynamic contractions using Huxley's cross-bridge mode...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(96)00115-0

    authors: Wu JZ,Herzog W,Cole GK

    更新日期:1997-01-01 00:00:00

  • A stochastic mover/stayer model for an HIV epidemic.

    abstract::A multicompartmental model is proposed to deal with the spread of the HIV epidemic. Stratification with respect to high- and low-risk groups is taken into account, introducing a "fuzzy" decomposition of the compartment of susceptibles. The infectivity period is staged using different levels of CD4 cell counts. Asympto...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90021-a

    authors: Rossi C

    更新日期:1991-12-01 00:00:00

  • A multiscale theoretical model for diffusive mass transfer in cellular biological media.

    abstract::An integrated methodology is developed for the theoretical analysis of solute transport and reaction in cellular biological media, such as tissues, microbial flocs, and biofilms. First, the method of local spatial averaging with a weight function is used to establish the equation which describes solute conservation at...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.04.008

    authors: Kapellos GE,Alexiou TS,Payatakes AC

    更新日期:2007-11-01 00:00:00

  • Chemotherapy for tumors: an analysis of the dynamics and a study of quadratic and linear optimal controls.

    abstract::We investigate a mathematical model of tumor-immune interactions with chemotherapy, and strategies for optimally administering treatment. In this paper we analyze the dynamics of this model, characterize the optimal controls related to drug therapy, and discuss numerical results of the optimal strategies. The form of ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.05.003

    authors: de Pillis LG,Gu W,Fister KR,Head T,Maples K,Murugan A,Neal T,Yoshida K

    更新日期:2007-09-01 00:00:00

  • Prediction of N-linked glycan branching patterns using artificial neural networks.

    abstract::A model was developed for novel prediction of N-linked glycan branching pattern classification for CHO-derived N-linked glycoproteins. The model consists of 30 independent recurrent neural networks and uses predicted quantities of secondary structure elements and residue solvent accessibility as an input vector. The m...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2007.10.005

    authors: Senger RS,Karim MN

    更新日期:2008-01-01 00:00:00

  • The principle of interval constraints: a generalization of the symmetric Dirichlet distribution.

    abstract::A structure for representing problems in decision analysis and in expert systems, which reason under uncertainty, is the influence diagram or causal network. A causal network consists of an underlying joint probability distribution and a directed acyclic graph in which a propositional variable that represents a margin...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90089-2

    authors: Neapolitan RE

    更新日期:1991-02-01 00:00:00

  • Strain driven transport for bone modeling at the periosteal surface.

    abstract::Bone modeling and remodeling has been the subject of extensive experimental studies. There have been several mathematical models proposed to explain the observed behavior, as well. A different approach is taken here in which the bone is treated from a macroscopic view point. In this investigation, a one-dimensional an...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2010.12.008

    authors: Banks-Sills L,Ståhle P,Svensson I,Eliaz N

    更新日期:2011-03-01 00:00:00

  • Stochastic models for the spread of HIV in a mobile heterosexual population.

    abstract::An important factor in the dynamic transmission of HIV is the mobility of the population. We formulate various stochastic models for the spread of HIV in a heterosexual mobile population, under the assumptions of constant and varying population sizes. We also derive deterministic and diffusion analogues for these mode...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.09.024

    authors: Sani A,Kroese DP,Pollett PK

    更新日期:2007-07-01 00:00:00

  • An epidemiological model for direct and indirect transmission of typhoid fever.

    abstract::The modified SIS epidemiological model considers the usual direct transmission (short cycle) and indirect transmission (long cycle) of typhoid fever. Thresholds are determined, and the equilibrium points are shown to be globally stable. Local stability of the equilibrium points is shown in the corresponding model with...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(89)90081-3

    authors: González-Guzmán J

    更新日期:1989-09-01 00:00:00

  • Influence of tissue metabolism and capillary oxygen supply on arteriolar oxygen transport: a computational model.

    abstract::We present a theoretical model for steady-state radial and longitudinal oxygen transport in arterioles containing flowing blood (plasma and red blood cells) and surrounded by living tissue. This model combines a detailed description of convective and diffusive oxygen transport inside the arteriole with a novel boundar...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2011.03.010

    authors: Moschandreou TE,Ellis CG,Goldman D

    更新日期:2011-07-01 00:00:00

  • Structural identifiability of models characterizing saturable binding: comparison of pseudo-steady-state and non-pseudo-steady-state model formulations.

    abstract::A two-state variable model in which saturable binding takes place is studied. Two mathematical representations of the same model are considered, one a standard chemical kinetics type of polynomial system, the other a reduced model formed from the original system via a pseudo-steady-state approximation. For a particula...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(95)00064-x

    authors: Chappell MJ

    更新日期:1996-04-01 00:00:00

  • Optimal harvesting and optimal vaccination.

    abstract::Two optimization problems are considered: Harvesting from a structured population with maximal gain subject to the condition of non-extinction, and vaccinating a population with prescribed reduction of the reproduction number of the disease at minimal costs. It is shown that these problems have a similar structure and...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.09.001

    authors: Hadeler KP,Müller J

    更新日期:2007-04-01 00:00:00

  • Habitat destruction, habitat restoration and eigenvector-eigenvalue relations.

    abstract::According to metapopulation theory, the capacity of a habitat patch network to support the persistence of a species is measured by the metapopulation capacity of the patch network. Mathematically, metapopulation capacity is given by the leading eigenvalue lambda(M) of an appropriately constructed non-negative n x n ma...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(02)00150-5

    authors: Ovaskainen O

    更新日期:2003-02-01 00:00:00

  • A sigmoidal model for biosorption of heavy metal cations from aqueous media.

    abstract::A novel multi-input single output (MISO) black-box sigmoid model is developed to simulate the biosorption of heavy metal cations by the fission yeast from aqueous medium. Validation and verification of the model is done through statistical chi-squared hypothesis tests and the model is evaluated by uncertainty and sens...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2015.04.007

    authors: Özen R,Sayar NA,Durmaz-Sam S,Sayar AA

    更新日期:2015-07-01 00:00:00

  • Some exact solutions of a generalized Fisher equation related to the problem of biological invasion.

    abstract::The problem of biological invasion in a model single-species community is considered, the spatiotemporal dynamics of the system being described by a modified Fisher equation. For a special case, we obtain an exact solution describing self-similar growth of the initially inhabited domain. By comparison with numerical s...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(01)00068-2

    authors: Petrovskii S,Shigesada N

    更新日期:2001-08-01 00:00:00

  • A comparison of different bivariate correlated frailty models and estimation strategies.

    abstract::Frailty models are becoming increasingly popular in multivariate survival analysis. Shared frailty models in particular are often used despite their limitations. To overcome their disadvantages numerous correlated frailty models were established during the last decade. In the present study, we examine bivariate correl...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2004.11.010

    authors: Wienke A,Arbeev KG,Locatelli I,Yashin AI

    更新日期:2005-11-01 00:00:00

  • Investigation of the performance of fermentation processes using a mathematical model including effects of metabolic bottleneck and toxic product on cells.

    abstract::A number of recent research studies have focused on theoretical and experimental investigation of a bottleneck in a metabolic reaction network. However, there is no study on how the bottleneck affects the performance of a fermentation process when a product is highly toxic and remarkably influences the growth and deat...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2010.08.001

    authors: Sriyudthsak K,Shiraishi F

    更新日期:2010-11-01 00:00:00

  • The influence of soluble fragments of extracellular matrix (ECM) on tumor growth and morphology.

    abstract::A major challenge in matrix-metalloproteinase (MMP) target validation and MMP-inhibitor-drug development for anti-cancer clinical trials is to better understand their complex roles (often competing with each other) in tumor progression. While there is extensive research on the growth-promoting effects of MMPs, the gro...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2017.11.014

    authors: Nargis NN,Aldredge RC,Guy RD

    更新日期:2018-02-01 00:00:00

  • Modeling multispecies biofilms including new bacterial species invasion.

    abstract::A mathematical model for multispecies biofilm evolution based on continuum approach and mass conservation principles is presented. The model can describe biofilm growth dynamics including spatial distribution of microbial species, substrate concentrations, attachment, and detachment, and, in particular, is able to pre...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2014.10.009

    authors: D'Acunto B,Frunzo L,Klapper I,Mattei MR

    更新日期:2015-01-01 00:00:00

  • Subthreshold and superthreshold coexistence of pathogen variants: the impact of host age-structure.

    abstract::It is well known that in the most general epidemic models with multiple pathogen variants a competitive exclusion principle is valid, such that the variant with the highest reproduction number eliminates the rest. Mechanisms such as super-infection, coinfection, and cross-immunity can lead to pathogen polymorphism whe...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.09.010

    authors: Martcheva M,Pilyugin SS,Holt RD

    更新日期:2007-05-01 00:00:00

  • Theory of the locomotion of nematodes: control of the somatic motor neurons by interneurons.

    abstract::The only animal of which the complete neural circuitry is known at the submicroscopical level is the nematode Caenorhabditis elegans. This anatomical knowledge is complemented by functional insight from electrophysiological experiments in the related nematode Ascaris lumbricoides, which show that Ascaris motor neurons...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(93)90033-7

    authors: Niebur E,Erdös P

    更新日期:1993-11-01 00:00:00