Predicting polymerase II core promoters by cooperating transcription factor binding sites in eukaryotic genes.

Abstract:

:Several discriminate functions for predicting core promoters that based on the potential cooperation between transcription factor binding sites (TFBSs) are discussed. It is demonstrated that the promoter predicting accuracy is improved when the cooperation among TFBSs is taken into consideration. The core promoter region of a newly discovered gene CKLFSF1 is predicted to locate more than 1.5 kb far away from the 5' end of the transcript and in the last intron of its upstream gene, which is experimentally confirmed later. The core promoters of 3402 human RefSeq sequences, obtained by extending the mRNAs in human genome sequences, are predicted by our algorithm, and there are about 60% of the predicted core promoters locating within the +/- 500 bp region relative to the annotated transcription start site.

authors

Ma XT,Qian MP,Tang HX

doi

10.1093/abbs/36.4.250

subject

Has Abstract

pub_date

2004-04-01 00:00:00

pages

250-8

issue

4

eissn

1672-9145

issn

1745-7270

journal_volume

36

pub_type

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