Abstract:
:Several discriminate functions for predicting core promoters that based on the potential cooperation between transcription factor binding sites (TFBSs) are discussed. It is demonstrated that the promoter predicting accuracy is improved when the cooperation among TFBSs is taken into consideration. The core promoter region of a newly discovered gene CKLFSF1 is predicted to locate more than 1.5 kb far away from the 5' end of the transcript and in the last intron of its upstream gene, which is experimentally confirmed later. The core promoters of 3402 human RefSeq sequences, obtained by extending the mRNAs in human genome sequences, are predicted by our algorithm, and there are about 60% of the predicted core promoters locating within the +/- 500 bp region relative to the annotated transcription start site.
journal_name
Acta Biochim Biophys Sin (Shanghai)journal_title
Acta biochimica et biophysica Sinicaauthors
Ma XT,Qian MP,Tang HXdoi
10.1093/abbs/36.4.250subject
Has Abstractpub_date
2004-04-01 00:00:00pages
250-8issue
4eissn
1672-9145issn
1745-7270journal_volume
36pub_type
杂志文章abstract::Acute myocardial infarction (AMI) is one of the major causes of morbidity and mortality in the world. Ischemia/reperfusion (I/R) injury-induced cardiomyocytes death is the main obstacle that limits the heart function recovery of the AMI patients. Reactive oxygen species (ROS) generated by mitochondria is the main path...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmy102
更新日期:2018-10-01 00:00:00
abstract::The Hippo pathway was initially identified in Drosophila by genetic mosaic screens for tumor suppressor genes. Researches indicated that the Hippo pathway is a key regulator of organ size and is conserved during evolution. Furthermore, studies of mouse models and clinical samples demonstrated the importance of Hippo p...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章,评审
doi:10.1093/abbs/gmu110
更新日期:2015-01-01 00:00:00
abstract::Mycobacterium tuberculosis (Mtb) is the key devastating bacterial pathogen responsible for tuberculosis. Increasing emergence of multi-drug-resistant, extensively drug-resistant, and rifampicin/isoniazid-resistant strains of Mtb makes the discovery of validated drug targets an urgent priority. As a vital translational...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmy164
更新日期:2019-02-01 00:00:00
abstract::Idiopathic congenital nystagmus (ICN) is a genetically heterogeneous eye movement disorder which seriously reduces childhood visual acuity. X-linked inheritance is the most common pattern, and mutations in FERM domain-containing protein 7 (FRMD7) are the major cause. Here, we recruited a four-generation Chinese family...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmy161
更新日期:2019-02-01 00:00:00
abstract::Circulating endothelial progenitor cells (cEPCs) play an important role in cancer development. Previous studies showed that serum carcinoembryonic antigen (CEA) levels and the number of circulating endothelial progenitor cells (cEPCs) in the peripheral blood are both involved in tumor neoangiogenesis, and can be used ...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmx147
更新日期:2018-03-01 00:00:00
abstract::In the present study, we investigated the inhibition of the Lux quorum-sensing system by N-acyl cyclopentylamine (Cn-CPA). The Lux quorum-sensing system regulates luminescence gene expression in Vibrio fischeri. We have already reported on the synthesis of Cn-CPA and their abilities as inhibitors of the quorum-sensing...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1111/j.1745-7270.2008.00490.x
更新日期:2008-12-01 00:00:00
abstract::Gene therapy has emerged as a promising approach for the lethal disorder of Duchenne muscular dystrophy (DMD). Using a novel non-viral delivery system, the human ribosomal DNA (hrDNA) targeting vector, we targeted a minidystrophin-GFP fusion gene into the hrDNA locus of HT1080 cells with a high site-specific integrate...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmp080
更新日期:2009-12-01 00:00:00
abstract::Hypoxia is a key component of the tumor microenvironment and represents a well-documented source of therapeutic failure in clinical oncology. Recent work has provided support for the idea that non-coding RNAs, and in particular, microRNAs, may play important roles in the adaptive response to low oxygen in tumors. Spec...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章,评审
doi:10.1093/abbs/gmt141
更新日期:2014-03-01 00:00:00
abstract::Heart failure (HF) induced by ischemia myocardial infarction (MI) is one of the major causes of morbidity and mortality all around the world. Atorvastatin, a hydroxymethylglutaryl coenzyme A reductase inhibitor, has been demonstrated to benefit patients with ischemic or non-ischemic-induced HF, but the mechanism is st...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmy133
更新日期:2018-12-01 00:00:00
abstract::Cordycepin (3'-deoxyadenosine) is a naturally occurring adenosine analog and one of the bioactive constituents isolated from Cordyceps sinensis, species of the fungal genus Cordyceps. It has traditionally been a prized Chinese folk medicine for the human well-being. However, the actions of cordycepin against renal isc...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmz145
更新日期:2020-02-03 00:00:00
abstract::Neuropeptide Y (NPY) is a ubiquitous endocrine neuropeptide found in vertebrate and invertebrate. In our present work, two NPY-like exocrine conopeptides (designated as cono-NPYs) were first identified in the venom of cone snails. Both cono-NPYs showed sequence characteristics of invertebrate NPYs, suggesting that som...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmq042
更新日期:2010-07-01 00:00:00
abstract::Melanoma is the most malignant and aggressive form of skin carcinoma originating in the pigment-producing melanocytes. In this study, to further investigate the molecular mechanisms of the development and progression of melanoma, we explored the impacts of long non-coding RNA (lncRNA) CASC2 on melanoma cell functions....
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmx148
更新日期:2018-03-01 00:00:00
abstract::Cumulative work on glucocorticoid (GC) regulation of genes in lymphoid cell cultures has revealed that apoptotic sensitivity to GCs depends on sufficient active GC receptors in the cells. The actions of the ligand-driven GC receptor that lead to apoptosis depend on interactions with other major cell-signaling systems,...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章,评审
doi:10.1111/j.1745-7270.2008.00433.x
更新日期:2008-07-01 00:00:00
abstract::A number of significant studies in the field of cell biology have revealed another pattern of intracellular signal transduction in which cells transmit information through the dynamics of key signaling molecules. Dynamical properties of p53 have been demonstrated to be the key factor in dictating cell fate, including ...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmx006
更新日期:2017-04-01 00:00:00
abstract::The natural alkaloid berberine has been recently described as a promising anticancer drug. In order to improve its efficacy and bioavailability, several derivatives have been designed and synthesized and found to be even more potent than the lead compound. Among the series of berberine derivatives we have produced, fi...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmv077
更新日期:2015-10-01 00:00:00
abstract::Recent studies have suggested that antibodies can catalyze the generation of unknown oxidants including hydrogen peroxide (H2O2) and ozone (O3) from singlet oxygen (1O2) and water. This study is aimed to detect the effect of antibody-catalyzed water oxidation on atherosclerosis. Our results showed that both H2O2 and O...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1111/j.1745-7270.2006.00181.x
更新日期:2006-06-01 00:00:00
abstract::Some barley mutants can synthesize neither anthocyanins nor proanthocyanidins in the seed coat, which is related to several genes in locus Ant13, but the exact model of action remains unknown. We used the cDNA microarray technology with barley transcription-deficient mutant (ant13-152) that does not synthesize proanth...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/36.10.695
更新日期:2004-10-01 00:00:00
abstract::Hyperhomocysteinemia (HHcy) is a risk factor for cardiovascular disease and has a strong correlation with heart failure. However, the effects of HHcy on cardiac tissue remain less well understood. To elucidate the role of p53-dependent apoptosis in HHcy-induced cardiac injury, we fed ApoE(-/-) mice with high methionin...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmt030
更新日期:2013-05-01 00:00:00
abstract::Cortactin, an actin-binding protein and a substrate of Src, is encoded by the EMS1 oncogene. Cortactin is known to activate Arp2/3 complex-mediated actin polymerization and interact with dynamin, a large GTPase and proline rich domain-containing protein. Transferrin endocytosis was significantly reduced in cells by kn...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1111/j.1745-7270.2006.00141.x
更新日期:2006-02-01 00:00:00
abstract::Allelic loss of chromosome 3p, including the 3p21.3 region, is found in 95-100% of primary nasopharyngeal carcinoma (NPC) biopsies, suggesting that this region should harbor some tumor suppressor genes (TSGs) closely related to NPC development. Several TSGs located at 3p21.3, such as RASSF1A, LTF and BLU, have been de...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmn006
更新日期:2009-01-01 00:00:00
abstract::Caveolin-1 is regulated by estrogen in vascular smooth muscle cells. Raloxifene, a selective estrogen receptor modulator that possibly has cardioprotective properties without an increased risk of cancer or other side effects of estrogen, may be used in women with risk of coronary artery disease. However, the relations...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1111/j.1745-7270.2006.00222.x
更新日期:2006-11-01 00:00:00
abstract::Carbon monoxide (CO) is often viewed as a lethal gas in light of its capacity to prevent oxygen uptake in hemoglobin; however, it also functions to regulate a variety of proteins and physiological processes. Here we show that CO is an important chemical cue, to which neurons respond strongly, and this response is then...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmv017
更新日期:2015-05-01 00:00:00
abstract::The glutathione S-transferase mu 2 gene (GSTM2) encodes a GST functioning in the elimination of electrophilic compounds and the regulation of cell growth. In this study, the sequence of porcine GSTM2 gene that contains the complete sequence encoding a protein of 218 amino acids was cloned. The deduced amino acid seque...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1111/j.1745-7270.2007.00319.x
更新日期:2007-08-01 00:00:00
abstract::MicroRNAs (miRNAs) are some short RNAs that regulate multiple biological functions at post-transcriptional levels, such as tumorigenic processes, inflammatory lesions and cell apoptosis. Zinc finger E-box binding homeobox factor 1 (ZEB1) is a crucial mediator of epithelial-mesenchymal transition (EMT). It induces mali...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmx132
更新日期:2018-02-01 00:00:00
abstract::The human immunodeficiency virus-1 (HIV-1) envelope glycoprotein 120 (gp120) binds to cell surface receptors and mediates HIV entry. Previous studies suggest the cell surface protein disulfide isomerase (PDI) might interact with disulfide bond(s) of gp120 and thus facilitate HIV-1 entry. In the present study, a kineti...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmq024
更新日期:2010-05-15 00:00:00
abstract::Canonical meiosis is characterized by two sequential rounds of nuclear divisions following one round of DNA replication-reductional segregation of homologous chromosomes during the first division and equational segregation of sister chromatids during the second division. Meiosis in an inverted order of two nuclear div...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章,评审
doi:10.1093/abbs/gmaa054
更新日期:2020-07-10 00:00:00
abstract::The critical molecular mechanism in the development of the pulmonary fibrosis remains unknown, leaving diagnosed patients with a poor prognosis. To isolate the genes specifically up-regulated in pulmonary fibrosis, we established a rat silicosis model 360 d after treatment with crystalline silica suspension. Radiograp...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:
更新日期:2008-08-01 00:00:00
abstract::The aim of this study was to investigate the pro-apoptotic mechanism of C-phycocyanin (C-PC)-mediated photodynamic therapy (PDT) in a murine tumor model and cultured MCF-7 cells. The mice were divided into four groups: control, He-Ne laser radiation, C-PC treatment, and C-PC treatment + He-Ne laser radiation. The effe...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmp104
更新日期:2010-01-01 00:00:00
abstract::Several essential biological progresses in mammals are regulated by circadian rhythms. Though the molecular mechanisms of oscillating these circadian rhythms have been uncovered, the specific functions of the circadian genes are not very clear. It has been reported that knocking down circadian genes by microRNA is a u...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmu007
更新日期:2014-04-01 00:00:00
abstract::The mechanisms of chronic neuropathic pain are not clear. Serum microRNAs (miRNAs) might show a special feature for chronic nervous lesions. However, little is known about the changes in circulating miRNAs for the neuropathic pain. Therefore, changes in the circulating miRNAs expression profile for the neuropathic pai...
journal_title:Acta biochimica et biophysica Sinica
pub_type: 杂志文章
doi:10.1093/abbs/gmu090
更新日期:2014-11-01 00:00:00