Abstract:
:Disease diagnosis is based on a number of factors, including laboratory tests for pathogen identification. Rapid development of genomic techniques for characterization of bacteria over the past decade has greatly simplified and improved pathogen detection and identification, but DNA-based methods have not yet entirely replaced traditional culture and phenotypic tests in the plant industry. The first section of this review focuses on rapid immunodiagnostic and DNA-based detection methods for known bacterial pathogens in plants or plant products, which often manifest no symptoms of disease. The second section covers the broader topic of disease diagnosis and new methods for identifying and characterizing bacteria.
journal_name
Annu Rev Phytopatholjournal_title
Annual review of phytopathologyauthors
Alvarez AMdoi
10.1146/annurev.phyto.42.040803.140329subject
Has Abstractpub_date
2004-01-01 00:00:00pages
339-66eissn
0066-4286issn
1545-2107journal_volume
42pub_type
杂志文章,评审abstract::Banana (Musa spp.) is one of the world's most valuable primary agricultural commodities. Exported fruit are key commodities in several producing countries yet make up less than 15% of the total annual output of 145 million metric tons (MMT). Transnational exporters market fruit of the Cavendish cultivars, which are us...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080614-120305
更新日期:2015-01-01 00:00:00
abstract::This review examines the discovery of naturally occurring phytochemicals antagonistic toward plant-parasitic and other nematodes. Higher plants have yielded a broad spectrum of active compounds, including polythienyls, isothiocyanates, glucosinolates, cyanogenic glycosides, polyacetylenes, alkaloids, lipids, terpenoid...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.40.032602.130045
更新日期:2002-01-01 00:00:00
abstract::Soybean hosts a wide variety of pathogens that cause significant yield losses. The importance of soybean as a major oilseed crop has led to research focused on its interactions with pathogens, such as Soybean mosaic virus, Pseudomonas syringae, Phytophthora sojae, Phakopsora pachyrhizi, and Heterodera glycines. Pionee...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080615-100156
更新日期:2016-08-04 00:00:00
abstract::Yellow rust of barley is an invasive disease that was found in the past 10 years in North America. The causal agent, Puccinia striiformis f. sp. hordei, was introduced into Colombia, South America, from Europe in 1975. It spread to all major barley-producing areas in South America by 1982. In 1988 it was found in Mexi...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.39.1.367
更新日期:2001-01-01 00:00:00
abstract::Intercropping, the simultaneous cultivation of multiple crop species, has been used throughout history and remains common among farmers of small landholdings in the tropics. One benefit of this practice may be disease control. In phenomenological research comparing disease in monocrops and intercrops, primarily due to...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-082712-102246
更新日期:2013-01-01 00:00:00
abstract::Positive strand RNA viral genomes are unique in the viral world in serving a dual role as mRNA and replicon. Since the origin of the minus-strand RNA replication intermediate is at the 3'-end of the genome, the 3'-untranslated region (UTR) clearly plays a role in viral RNA replication. The messenger role of this same ...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.37.1.151
更新日期:1999-01-01 00:00:00
abstract::Starting with the influences of having a father who was an agricultural plant pathologist, I sketch my career through university and research institute from field epidemiology, basic virus characterization to molecular biology. I note what I consider to be the highlights of my scientific career and the events that sha...
journal_title:Annual review of phytopathology
pub_type: 历史文章,杂志文章,评审
doi:10.1146/annurev.phyto.46.110807.094143
更新日期:2008-01-01 00:00:00
abstract::Many destructive diseases of plants and animals are caused by oomycetes, a group of eukaryotic pathogens important to agricultural, ornamental, and natural ecosystems. Understanding the mechanisms underlying oomycete virulence and the genomic processes by which those mechanisms rapidly evolve is essential to developin...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-081211-172912
更新日期:2012-01-01 00:00:00
abstract::Bacteria have many export and secretion systems that translocate cargo into and across biological membranes. Seven secretion systems contribute to pathogenicity by translocating proteinaceous cargos that can be released into the extracellular milieu or directly into recipient cells. In this review, we describe these s...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-011014-015624
更新日期:2014-01-01 00:00:00
abstract::I relate my becoming a phytopathologist and my very satisfying growth into and beyond IPM to holistic plant health, and puzzle over paradigms that have prevented our accepting the overwhelming logic of (a) seeking defensible disease-loss data to justify funding and guide research and management priorities, (b) managin...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.36.1.1
更新日期:1998-01-01 00:00:00
abstract::This chapter represents a travelog of my life and career and the philosophical points I acquired along the way. I was born on a sugar plantation on the island of Hawaii and early on had a stuttering problem. I attended the Kamehameha Schools and received my BS and MS degrees from the University of Hawaii and my Ph.D. ...
journal_title:Annual review of phytopathology
pub_type: 历史文章,杂志文章
doi:10.1146/annurev-phyto-080614-120314
更新日期:2015-01-01 00:00:00
abstract::Plant disease arises from the interaction of processes occurring at multiple spatial and temporal scales. With new tools such as next-generation sequencing, we are learning about the diversity of microbes circulating within and among plant populations and often coinhabiting host individuals. The proliferation of patho...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080615-095959
更新日期:2016-08-04 00:00:00
abstract::In this review, I recount my personal history. My drive to study host-pathogen interactions was to find alternatives for agrochemicals, which was triggered after reading the book "Silent Spring" by Rachel Carson. I reflect on my research at the Laboratory of Phytopathology at Wageningen University, where I have worked...
journal_title:Annual review of phytopathology
pub_type: 历史文章,杂志文章,评审
doi:10.1146/annurev-phyto-011516-040249
更新日期:2016-08-04 00:00:00
abstract::Systems biology attempts to answer biological questions by integrating across diverse genomic data sets. With the increasing ability to conduct genomics experiments, this integrative approach is being rapidly applied across numerous biological research communities. One of these research communities investigates how pl...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-081211-172950
更新日期:2012-01-01 00:00:00
abstract::Soft-rot Enterobacteriaceae (SRE), which belong to the genera Pectobacterium and Dickeya, consist mainly of broad host-range pathogens that cause wilt, rot, and blackleg diseases on a wide range of plants. They are found in plants, insects, soil, and water in agricultural regions worldwide. SRE encode all six known pr...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-081211-173013
更新日期:2012-01-01 00:00:00
abstract::The plant cuticle and cell wall separate microbial pathogens from the products of plant metabolism. While microbial pathogens try to breach these barriers for colonization, plants respond to attempted penetration by a battery of wall-associated defense reactions. Successful pathogens circumvent or suppress plant nonse...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.45.062806.094325
更新日期:2007-01-01 00:00:00
abstract::Virus diseases that have emerged in the past two decades limit the production of important vegetable crops in tropical, subtropical, and temperate regions worldwide, and many of the causal viruses are transmitted by whiteflies (order Hemiptera, family Aleyrodidae). Most of these whitefly-transmitted viruses are begomo...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-072910-095235
更新日期:2011-01-01 00:00:00
abstract::The phytohormone ethylene is a principal modulator in many aspects of plant life, including various mechanisms by which plants react to pathogen attack. Induced ethylene biosynthesis and subsequent intracellular signaling through a single conserved pathway have been well characterized. This leads to a cascade of trans...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.44.070505.143440
更新日期:2006-01-01 00:00:00
abstract::Economic, environmental, and technological influences complicate the task of achieving disease-free products in the ornamentals industry. Integrated pest management (IPM) is a cornerstone of floriculture and nursery crop production: strategies include sanitation, clean stock, host resistance, and control through biolo...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.43.040204.140007
更新日期:2005-01-01 00:00:00
abstract::Nineteen single dominant genes (R genes) for resistance to viruses, nematodes, and fungi have been positioned on the molecular map of potato using DNA markers. Fourteen of those genes are located in five "hotspots" for resistance in the potato genome. Quantitative trait loci (QTL) for resistance to late blight caused ...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.39.1.79
更新日期:2001-01-01 00:00:00
abstract::This chapter examines the quiescence period during different stages of fungal attack of postharvest pathogens: quiescence during spore germination and initial hyphal development, during and after appressorium formation, and quiescence of germinated appressorium and subcuticular hyphae. The different mechanisms for qui...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.34.1.413
更新日期:1996-01-01 00:00:00
abstract::Genetically engineered crops have been grown for more than 20 years, resulting in widespread albeit variable benefits for farmers and consumers. We review current, likely, and potential genetic engineering (GE) applications for the development of disease-resistant crop cultivars. Gene editing, gene drives, and synthet...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev-phyto-080417-045954
更新日期:2019-08-25 00:00:00
abstract::Plasmids are common residents of phytopathogenic bacteria and contribute significantly to host evolution in a multi-faceted manner. Plasmids tend to encode determinants of virulence and ecological fitness that can enhance adaptation to a specific niche or can influence niche expansion. Many of these determinants appea...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.45.062806.094317
更新日期:2007-01-01 00:00:00
abstract::Parasitic nematodes that infect humans, animals, and plants cause serious diseases that are deleterious to human health and agricultural productivity. Chemical and biological control methods have reduced the impact of these parasites. However, surviving environmental stages lead to persistent reinfection of host speci...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.41.052102.104023
更新日期:2003-01-01 00:00:00
abstract::The phenazines include upward of 50 pigmented, heterocyclic nitrogen-containing secondary metabolites synthesized by some strains of fluorescent Pseudomonas spp. and a few other bacterial genera. The antibiotic properties of these compounds have been known for over 150 years, but advances within the past two decades h...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.44.013106.145710
更新日期:2006-01-01 00:00:00
abstract::The interaction between tomato and the leaf mold pathogen Cladosporium fulvum is controlled in a gene-for-gene manner. This interaction has provided useful insights to the molecular basis of recognition specificity in plant disease resistance (R) proteins, disease resistance (R) gene evolution, R-protein mediated sign...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.43.040204.140224
更新日期:2005-01-01 00:00:00
abstract::The relationship between epidemiology and disease management is long-standing but sometimes tenuous. It may seem self-evident that improved understanding of epidemic processes will lead to more effective control practices but this remains a testable proposition rather than demonstrated reality. A wide range of models ...
journal_title:Annual review of phytopathology
pub_type: 杂志文章,评审
doi:10.1146/annurev.phyto.42.040803.140427
更新日期:2004-01-01 00:00:00
abstract::During the Cold War, coffee became a strategically important crop in the global contest between the United States and the Soviet Union. The economies of many US allies in Latin America depended upon coffee. In the Cold War context, then, the coffee leaf rust (Hemileia vastatrix) became a geopolitical problem. Coffee e...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev-phyto-082718-100109
更新日期:2020-08-25 00:00:00
abstract::The heterothallic ascomycete, Magnaporthe grisea, is the blast pathogen of rice and about 50 other grasses, and has potential for sexual and asexual reproduction. In most populations, data from mating type, fertility assays, and genotypic diversity strongly suggest that the pathogen is asexual. However, parasexual rec...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.36.1.249
更新日期:1998-01-01 00:00:00
abstract::Barley yellow dwarf viruses represent one of the most economically important and ubiquitous groups of plant viruses. This review focuses primarily on four research areas in which progress has been most rapid. These include (a) evidence supporting reclassification of BYDVs into two genera; (b) elucidation of gene funct...
journal_title:Annual review of phytopathology
pub_type: 杂志文章
doi:10.1146/annurev.phyto.35.1.167
更新日期:1997-01-01 00:00:00