Regulated gene expression in methanogens.

Abstract:

:Methanogens form a very large and diverse group of microorganisms within the domain of the Archaea. Energy for their growth is obtained by the reduction of a variety of substrates into methane. Several genes, coding for enzymes involved in methanogenesis or in the central metabolism have been cloned and studied. The molecular features of their expression signals have been compared with bacterial and eukaryal expression signals. This indicated that the transcription process is an intermediate form between the specific processes known in Bacteria and Eukarya. The translation system that is used in Archaea is very similar with the process in Bacteria. Although the molecular features of genes and expression signals in Archaea are well-studied, investigations on the regulation of gene expression in these organisms are very scarce. In order to give insight into molecular regulatory mechanisms in methanogens, the current knowledge of regulated systems in methanogens will be reviewed in this manuscript.

journal_name

FEMS Microbiol Rev

authors

Eggen RI

doi

10.1111/j.1574-6976.1994.tb00138.x

subject

Has Abstract

pub_date

1994-10-01 00:00:00

pages

251-60

issue

2-3

eissn

0168-6445

issn

1574-6976

pii

0168-6445(94)90116-3

journal_volume

15

pub_type

杂志文章,评审
  • ELISA in serodiagnosis of HCV infection.

    abstract::A high level of anti-HCV is generally associated with viral replication and the number of recognized epitopes appears to be correlated with the viral charge. Nevertheless, the absence of detectable antibodies in about 60% of patients during the acute phase of the disease and in 10% of chronically infected (generally i...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1111/j.1574-6976.1994.tb00092.x

    authors: Pillot J,Rioche M,Lazizi Y

    更新日期:1994-07-01 00:00:00

  • Nickel uptake and utilization by microorganisms.

    abstract::Nickel is an essential nutrient for selected microorganisms where it participates in a variety of cellular processes. Many microbes are capable of sensing cellular nickel ion concentrations and taking up this nutrient via nickel-specific permeases or ATP-binding cassette-type transport systems. The metal ion is specif...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00042-1

    authors: Mulrooney SB,Hausinger RP

    更新日期:2003-06-01 00:00:00

  • Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics.

    abstract::Lipopeptides constitute a structurally diverse group of metabolites produced by various bacterial and fungal genera. In the past decades, research on lipopeptides has been fueled by their antimicrobial, antitumour, immunosuppressant and surfactant activities. However, the natural functions of lipopeptides in the lifes...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2010.00221.x

    authors: Raaijmakers JM,De Bruijn I,Nybroe O,Ongena M

    更新日期:2010-11-01 00:00:00

  • Regulation of gene expression during swarmer cell differentiation in Proteus mirabilis.

    abstract::The gram-negative bacterium Proteus mirabilis can exist in either of two cell types, a vegetative cell characterized as a short rod and a highly elongated and hyperflagellated swarmer cell. This differentiation is triggered by growth on solid surfaces and multiple inputs are sensed by the cell to initiate the differen...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2010.00229.x

    authors: Morgenstein RM,Szostek B,Rather PN

    更新日期:2010-09-01 00:00:00

  • Environmental and genetic modulation of the phenotypic expression of antibiotic resistance.

    abstract::Antibiotic resistance can be acquired by mutation or horizontal transfer of a resistance gene, and generally an acquired mechanism results in a predictable increase in phenotypic resistance. However, recent findings suggest that the environment and/or the genetic context can modify the phenotypic expression of specifi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux004

    authors: Hughes D,Andersson DI

    更新日期:2017-05-01 00:00:00

  • How do base-pairing small RNAs evolve?

    abstract::The increasing numbers of characterized base-pairing small RNAs (sRNAs) and the identification of these regulators in a broad range of bacteria are allowing comparisons between species and explorations of sRNA evolution. In this review, we describe some examples of trans-encoded base-pairing sRNAs that are species-spe...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv014

    authors: Updegrove TB,Shabalina SA,Storz G

    更新日期:2015-05-01 00:00:00

  • Wall teichoic acids: Physiology and applications.

    abstract::Wall teichoic acids (WTAs) are charged glycopolymers containing phosphodiester-linked polyol units and represent one of the major components of Gram-positive cell envelope. WTAs have important physiological functions in cell division, gene transfer, surface adhesion, drug resistance, and biofilm formation, and are cri...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1093/femsre/fuaa064

    authors: Wu X,Han J,Gong G,Koffas MAG,Zha J

    更新日期:2020-12-03 00:00:00

  • Compartmentalization and spatiotemporal organization of macromolecules in bacteria.

    abstract::For many years, the bacterial cells were regarded as tiny vessels lacking internal organization. This view, which stemmed from the scarcity of membrane-bounded organelles, has changed considerably in recent years, mainly due to advancements in imaging capabilities. Consequently, despite the rareness of conventional or...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00348.x

    authors: Govindarajan S,Nevo-Dinur K,Amster-Choder O

    更新日期:2012-09-01 00:00:00

  • Evolution of the soluble diiron monooxygenases.

    abstract::Based on structural, biochemical, and genetic data, the soluble diiron monooxygenases can be divided into four groups: the soluble methane monooxygenases, the Amo alkene monooxygenase of Rhodococcus corallinus B-276, the phenol hydroxylases, and the four-component alkene/aromatic monooxygenases. The limited phylogenet...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00023-8

    authors: Leahy JG,Batchelor PJ,Morcomb SM

    更新日期:2003-10-01 00:00:00

  • Themes and variations in prokaryotic cell division.

    abstract::Perhaps the biggest single task facing a bacterial cell is to divide into daughter cells that contain the normal complement of chromosomes. Recent technical and conceptual breakthroughs in bacterial cell biology, combined with the flood of genome sequence information and the excellent genetic tools in several model sy...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2000.tb00554.x

    authors: Margolin W

    更新日期:2000-10-01 00:00:00

  • Antibiotics in early life: dysbiosis and the damage done.

    abstract::Antibiotics are the most common type of medication prescribed to children, including infants, in the Western world. While use of antibiotics has transformed previously lethal infections into relatively minor diseases, antibiotic treatments can have adverse effects as well. It has been shown in children, adults and ani...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuy018

    authors: Neuman H,Forsythe P,Uzan A,Avni O,Koren O

    更新日期:2018-07-01 00:00:00

  • Pulses and delays, anticipation and memory: seeing bacterial stress responses from a single-cell perspective.

    abstract::Stress responses are crucial for bacteria to survive harmful conditions that they encounter in the environment. Although gene regulatory mechanisms underlying stress responses in bacteria have been thoroughly characterised for decades, recent advances in imaging technologies helped to uncover previously hidden dynamic...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1093/femsre/fuaa022

    authors: Lagage V,Uphoff S

    更新日期:2020-09-01 00:00:00

  • Role of eukaryotic-like serine/threonine kinases in bacterial cell division and morphogenesis.

    abstract::Bacteria possess a repertoire of versatile protein kinases modulating diverse aspects of their physiology by phosphorylating proteins on various amino acids including histidine, cysteine, aspartic acid, arginine, serine, threonine and tyrosine. One class of membrane serine/threonine protein kinases possesses a catalyt...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv041

    authors: Manuse S,Fleurie A,Zucchini L,Lesterlin C,Grangeasse C

    更新日期:2016-01-01 00:00:00

  • Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis.

    abstract::Bacillus thuringiensis is a well-known biopesticide that has been used for more than 80 years. This spore-forming bacterium belongs to the group of Bacillus cereus that also includes, among others, emetic and diarrheic pathotypes of B. cereus, the animal pathogen Bacillus anthracis and the psychrotolerant Bacillus wei...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1093/femsre/fuy034

    authors: Gillis A,Fayad N,Makart L,Bolotin A,Sorokin A,Kallassy M,Mahillon J

    更新日期:2018-11-01 00:00:00

  • Central role of the respiratory syncytial virus matrix protein in infection.

    abstract::Respiratory syncytial virus is the major respiratory pathogen of infants and children worldwide, with no effective treatment or vaccine available. Steady progress has been made in understanding the respiratory syncytial virus life cycle and the consequences of infection, but many areas of respiratory syncytial virus b...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2006.00025.x

    authors: Ghildyal R,Ho A,Jans DA

    更新日期:2006-09-01 00:00:00

  • Salmonella's long-term relationship with its host.

    abstract::Host-adapted strains of Salmonella enterica cause systemic infections and have the ability to persist systemically for long periods of time and pose significant public-health problems. Multidrug-resistant S. enterica serovar Typhi (S. Typhi) and nontyphoidal Salmonella (NTS) are on the increase and are often associate...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00332.x

    authors: Ruby T,McLaughlin L,Gopinath S,Monack D

    更新日期:2012-05-01 00:00:00

  • Thioredoxin and related proteins in procaryotes.

    abstract::Thioredoxin is a small (Mr 12,000) ubiquitous redox protein with the conserved active site structure: -Trp-Cys-Gly-Pro-Cys-. The oxidized form (Trx-S2) contains a disulfide bridge which is reduced by NADPH and thioredoxin reductase; the reduced form [Trx(SH)2] is a powerful protein disulfide oxidoreductase. Thioredoxi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6968.1988.tb02747.x

    authors: Gleason FK,Holmgren A

    更新日期:1988-12-01 00:00:00

  • Bacterial inclusion bodies are industrially exploitable amyloids.

    abstract::Understanding the structure, functionalities and biology of functional amyloids is an issue of emerging interest. Inclusion bodies, namely protein clusters formed in recombinant bacteria during protein production processes, have emerged as unanticipated, highly tunable models for the scrutiny of the physiology and arc...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuy038

    authors: de Marco A,Ferrer-Miralles N,Garcia-Fruitós E,Mitraki A,Peternel S,Rinas U,Trujillo-Roldán MA,Valdez-Cruz NA,Vázquez E,Villaverde A

    更新日期:2019-01-01 00:00:00

  • Peptidases and proteases of Escherichia coli and Salmonella typhimurium.

    abstract::A number of peptidases and proteases have been identified in Escherichia coli. Although their specific physiological roles are often not known, some of them have been shown to be involved in: the maturation of nascent polypeptide chains; the maturation of protein precursors; the signal peptide processing of exported p...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/0168-6445(89)90035-1

    authors: Lazdunski AM

    更新日期:1989-09-01 00:00:00

  • Metal limitation and toxicity at the interface between host and pathogen.

    abstract::Metals are required cofactors for numerous fundamental processes that are essential to both pathogen and host. They are coordinated in enzymes responsible for DNA replication and transcription, relief from oxidative stress, and cellular respiration. However, excess transition metals can be toxic due to their ability t...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12087

    authors: Becker KW,Skaar EP

    更新日期:2014-11-01 00:00:00

  • The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems.

    abstract::Small cells dominate photosynthetic biomass and primary production in many marine ecosystems. Traditionally, picoplankton refers to cells < or =2 microm. Here we extend the size range of the organisms considered to 3 microm, a threshold often used operationally in field studies. While the prokaryotic component of pico...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00121.x

    authors: Vaulot D,Eikrem W,Viprey M,Moreau H

    更新日期:2008-08-01 00:00:00

  • Vaginal microbiota and its role in HIV transmission and infection.

    abstract::The urogenital tract appears to be the only niche of the human body that shows clear differences in microbiota between men and women. The female reproductive tract has special features in terms of immunological organization, an epithelial barrier, microbiota, and influence by sex hormones such as estrogen. While the u...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12029

    authors: Petrova MI,van den Broek M,Balzarini J,Vanderleyden J,Lebeer S

    更新日期:2013-09-01 00:00:00

  • Structural and functional aspects of peroxisomal membranes in yeasts.

    abstract::The peroxisomal membrane compartmentalizes specific metabolic functions in the intermediary metabolism of various aerobic eukarya. In yeast, peroxisomal membranes are typified by their small width (+/- 7-8 nm) and absence of large integral membrane proteins in freeze-etch replicas. They show a unique polypeptide profi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1993.tb00002.x

    authors: Sulter GJ,Harder W,Veenhuis M

    更新日期:1993-08-01 00:00:00

  • Ribonuclease P: the diversity of a ubiquitous RNA processing enzyme.

    abstract::Ribonuclease P is the endonuclease required for generating the mature tRNA 5'-end. The ribonucleoprotein character of this enzyme has now been proven in most organisms and organelles. Exceptions, however, are still the chloroplasts, plant nuclei and animal mitochondria where no associated RNAs have been detected to da...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1999.tb00406.x

    authors: Schön A

    更新日期:1999-06-01 00:00:00

  • Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic Archaea.

    abstract::We review and update the work on genetic elements, e.g., viruses and plasmids (exluding IS elements and transposons) in the kingdom Crenarchaeota (Thermoproteales and Sulfolobales) and the orders Thermococcales and Thermoplasmales in the kingdom Euryarchaeota of the archael domain, including unpublished data from our ...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1996.tb00239.x

    authors: Zillig W,Prangishvilli D,Schleper C,Elferink M,Holz I,Albers S,Janekovic D,Götz D

    更新日期:1996-05-01 00:00:00

  • The future is now: single-cell genomics of bacteria and archaea.

    abstract::Interest in the expanding catalog of uncultivated microorganisms, increasing recognition of heterogeneity among seemingly similar cells, and technological advances in whole-genome amplification and single-cell manipulation are driving considerable progress in single-cell genomics. Here, the spectrum of applications fo...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12015

    authors: Blainey PC

    更新日期:2013-05-01 00:00:00

  • From Nano to Micro: using nanotechnology to combat microorganisms and their multidrug resistance.

    abstract::The spread of antibiotic resistance and increasing prevalence of biofilm-associated infections is driving demand for new means to treat bacterial infection. Nanotechnology provides an innovative platform for addressing this challenge, with potential to manage even infections involving multidrug-resistant (MDR) bacteri...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux003

    authors: Natan M,Banin E

    更新日期:2017-05-01 00:00:00

  • Emergent heterogeneous microenvironments in biofilms: substratum surface heterogeneity and bacterial adhesion force-sensing.

    abstract::Phenotypically heterogeneous microenvironments emerge as biofilms mature across different environments. Phenotypic heterogeneity in biofilm sub-populations not obeying quorum sensing-dictated, collective group behavior may be considered as a strategy allowing non-conformists to survive hostile conditions. Heterogeneou...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuy001

    authors: Ren Y,Wang C,Chen Z,Allan E,van der Mei HC,Busscher HJ

    更新日期:2018-05-01 00:00:00

  • T cell response and persistence of the microsporidia.

    abstract::The microsporidia are a diverse phylum of obligate intracellular parasites related to the fungi that cause significant and sometimes life-threatening disease in immune-compromised hosts, such as AIDS and organ transplant patients. More recently, their role in causing pathology in immune-competent populations has also ...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2011.00318.x

    authors: Ghosh K,Weiss LM

    更新日期:2012-05-01 00:00:00

  • Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae.

    abstract::The yeast Saccharomyces cerevisiae has been a favorite organism for pioneering studies on nutrient-sensing and signaling mechanisms. Many specific nutrient responses have been elucidated in great detail. This has led to important new concepts and insight into nutrient-controlled cellular regulation. Major highlights i...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12065

    authors: Conrad M,Schothorst J,Kankipati HN,Van Zeebroeck G,Rubio-Texeira M,Thevelein JM

    更新日期:2014-03-01 00:00:00