Functional genes mapped on the chicken genome.

Abstract:

:Microsatellite polymorphisms are finding increasing use in genetics. In addition to the random isolation of microsatellite markers, such markers can also be developed from sequences already present in public domain databases. An advantage of public domain databases is that these microsatellites are known to be located within or close to identified functional genes. In this study the GenBank and EMBL databases were screened for microsatellite markers and primers were defined for amplification. Subsequently, these markers were tested on a panel of five different birds from layer and broiler stocks and on the international reference families: the East Lansing reference family and the Compton reference family. Of the 33 loci tested, 25 were polymorphic on the test panel and from these 25, 14 were polymorphic in one or both reference families. Twelve of the 14 loci that could be mapped fell into previously defined linkage groups. The other two markers were not linked. Because three of the loci had previously been mapped to specific chromosomes by in situ hybridization, linkage groups E6 and C3 could be assigned to chromosome 6, E5 and C17 to chromosome 4 and E21 to one of the microchromosomes.

journal_name

Anim Genet

journal_title

Animal genetics

authors

Crooijmans RP,van der Poel JJ,Groenen MA

doi

10.1111/j.1365-2052.1995.tb02636.x

subject

Has Abstract

pub_date

1995-04-01 00:00:00

pages

73-8

issue

2

eissn

0268-9146

issn

1365-2052

journal_volume

26

pub_type

杂志文章
  • Prediction of breed composition in an admixed cattle population.

    abstract::Swiss Fleckvieh was established in 1970 as a composite of Simmental (SI) and Red Holstein Friesian (RHF) cattle. Breed composition is currently reported based on pedigree information. Information on a large number of molecular markers potentially provides more accurate information. For the analysis, we used Illumina B...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2012.02345.x

    authors: Frkonja A,Gredler B,Schnyder U,Curik I,Sölkner J

    更新日期:2012-12-01 00:00:00

  • A partial cDNA clone for porcine glucosephosphate isomerase: isolation, characterization and use in detection of restriction fragment length polymorphisms.

    abstract::A cDNA library for porcine skeletal muscle was established in the vector pBR322. The library was screened with an oligonucleotide probe coding for a hexapeptide from glucosephosphate isomerase (Gpi). A positive clone with an insert of about 450 bp and restriction sites for PstI, BamHI and PvuII was isolated. A 362-bp ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1987.tb00763.x

    authors: Davies W,Harbitz I,Hauge JG

    更新日期:1987-01-01 00:00:00

  • Single nucleotide polymorphism discovery in albacore and Atlantic bluefin tuna provides insights into worldwide population structure.

    abstract::The optimal management of the commercially important, but mostly over-exploited, pelagic tunas, albacore (Thunnus alalunga Bonn., 1788) and Atlantic bluefin tuna (BFT; Thunnus thynnus L., 1758), requires a better understanding of population structure than has been provided by previous molecular methods. Despite numero...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12051

    authors: Albaina A,Iriondo M,Velado I,Laconcha U,Zarraonaindia I,Arrizabalaga H,Pardo MA,Lutcavage M,Grant WS,Estonba A

    更新日期:2013-12-01 00:00:00

  • Polymorphisms in MHC-DRA and -DRB alleles of water buffalo (Bubalus bubalis) reveal different features from cattle DR alleles.

    abstract::Seventy-five individuals of Bubalus bubalis belonging to four different breeds, three of river buffalo and one of swamp buffalo, were studied for polymorphism in MHC DRB (Bubu-DRB) and DRA (Bubu-DRA) loci. Eight alleles of Bubu-DRB were found, and all alleles in the swamp type were shared with the three river breeds. ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2003.00920.x

    authors: Sena L,Schneider MP,Brenig B,Honeycutt RL,Womack JE,Skow LC

    更新日期:2003-02-01 00:00:00

  • Sequence analysis of MHC class I alpha 2 domain exon variants in one diploid and two haploid Atlantic salmon pedigrees.

    abstract::Genetic diversity in the second domain exon of Atlantic salmon (Salmo salar) major histocompatibility complex (Mhc) class I was investigated in two dams and nine of their haploid offspring by means of polymerase chain reaction (PCR) and DNA sequence analysis. A similar study was also performed on nine diploid offsprin...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1997.00183.x

    authors: Grimholt U,Olsaker I,Lingaas F,Lie O

    更新日期:1997-12-01 00:00:00

  • Detection of genome specific monomorphic loci in Bos taurus and Bubalus bubalis with oligodeoxyribonucleotide probe.

    abstract::A synthetic oligodeoxyribonucleotide probe (OAT36) comprising nine repeats of 5'GACA 3' and several enzymes were used to analyse cow, (Bos taurus) and buffalo (Bubalus bubalis) genomes and a number of monomorphic loci were detected in both the species. Different animals from the same species showed an almost 'similar'...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1993.tb00288.x

    authors: Ali S,Gauri,Bala S

    更新日期:1993-06-01 00:00:00

  • Phenotyping of pig alpha 1B-glycoprotein (PO2) and haemopexin by 1D polyacrylamide gel electrophoresis and immunoblotting.

    abstract::Described is an alternative procedure for the phenotyping of pig alpha 1B-glycoprotein (PO2) and haemopexin. The procedure is based on the separation of serum samples by horizontal polyacrylamide gel electrophoresis, passive blotting onto a nitrocellulose (NC) sheet, and immunochemical detection using a mixture of a p...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1989.tb00870.x

    authors: Kaláb P,Stratil A

    更新日期:1989-01-01 00:00:00

  • Heritability of racing performance in the Australian Thoroughbred racing population.

    abstract::Performance data for 164,046 Thoroughbreds entered in a race or official barrier trial in Australia were provided by Racing Information Services Australia. Analyses estimating the heritability for a range of racing performance traits using a single-trait animal model were performed using ASREML-R. Log of cumulative ea...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12234

    authors: Velie BD,Hamilton NA,Wade CM

    更新日期:2015-02-01 00:00:00

  • Resistance to malignant catarrhal fever in American bison (Bison bison) is associated with MHC class IIa polymorphisms.

    abstract::The Rhadinovirus ovine herpesvirus-2 (OvHV-2) is the most common causative agent of malignant catarrhal fever (MCF) in clinically susceptible ruminants including cattle and bison. American bison (Bison bison) are highly susceptible to clinical MCF. Nevertheless, approximately 20% of bison on ranches or in feedlots bec...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01575.x

    authors: Traul DL,Li H,Dasgupta N,O'Toole D,Eldridge JA,Besser TE,Davies CJ

    更新日期:2007-04-01 00:00:00

  • Mutation in the melanocortin 1 receptor is associated with amber colour in the Norwegian Forest Cat.

    abstract::Amber (previously called X-Colour) is a yellow recessive coat colour observed in the Norwegian Forest Cat (NFC) population and apparently absent in other cat breeds. Until now, there has never been any scientific evidence of yellow recessive mutation (e) reported in the extension gene in Felidae. We sequenced the comp...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2009.01864.x

    authors: Peterschmitt M,Grain F,Arnaud B,Deléage G,Lambert V

    更新日期:2009-08-01 00:00:00

  • Genetic association of the ACACB gene with milk yield and composition traits in dairy cattle.

    abstract::Previously, we re-sequenced the whole genomes of eight Holstein bulls with high or low milk protein and fat percentage, and we detected two indels in the ACACB (acetyl-CoA carboxylase beta) gene that were polymorphic between the two groups. Thus, we considered ACACB as a promising candidate gene potentially affecting ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12651

    authors: Han B,Liang W,Liu L,Li Y,Sun D

    更新日期:2018-06-01 00:00:00

  • Chromosomal assignment of chicken clone contigs by extending the consensus linkage map.

    abstract::The bacterial artificial clone-based physical map for chicken plays an important role in the integration of the consensus linkage map and the whole-genome shotgun sequence. It also provides a valuable resource for clone selection within applications such as fluorescent in situ hybridization and positional cloning. How...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2005.01289.x

    authors: Aerts JA,Veenendaal T,van der Poel JJ,Crooijmans RP,Groenen MA

    更新日期:2005-06-01 00:00:00

  • A candidate-SNP retrospective cohort study for fracture risk in Japanese Thoroughbred racehorses.

    abstract::Fractures are medical conditions that compromise the athletic potential of horses and/or the safety of jockeys. Therefore, the reduction of fracture risk is an important horse and human welfare issue. The present study used molecular genetic approaches to determine the effect of genetic risk for fracture at four candi...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12866

    authors: Tozaki T,Kusano K,Ishikawa Y,Kushiro A,Nomura M,Kikuchi M,Kakoi H,Hirota K,Miyake T,Hill EW,Nagata S

    更新日期:2020-02-01 00:00:00

  • East African pigs have a complex Indian, Far Eastern and Western ancestry.

    abstract::In this study, we have characterized the mitochondrial diversity of 81 swine from Uganda. Median-joining network analysis of D-loop sequences from these individuals and others characterized in previous studies allowed us to determine that Ugandan pigs cluster with populations from the West (Europe/North Africa), Far E...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12305

    authors: Noce A,Amills M,Manunza A,Muwanika V,Muhangi D,Aliro T,Mayega J,Ademun R,Sànchez A,Egbhalsaied S,Mercadé A,Masembe C

    更新日期:2015-08-01 00:00:00

  • Mapping of quantitative trait loci for clinical-chemical traits in swine.

    abstract::Clinical-chemical traits are diagnostic parameters essential for characterization of health and disease in veterinary practice. The traits show significant variability and are under genetic control, but little is known about the fundamental genetic architecture of this variability, especially in swine. We have identif...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2008.01804.x

    authors: Reiner G,Clemens N,Fischer R,Köhler F,Berge T,Hepp S,Willems H

    更新日期:2009-02-01 00:00:00

  • Caecal transcriptome analysis of colonized and non-colonized chickens within two genetic lines that differ in caecal colonization by Campylobacter jejuni.

    abstract::Campylobacter jejuni is one of the most common causes of human bacterial enteritis worldwide. The molecular mechanisms of the host responses of chickens to C. jejuni colonization are not well understood. We have previously found differences in C. jejuni colonization at 7-days post-inoculation (pi) between two genetic ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02168.x

    authors: Li XY,Swaggerty CL,Kogut MH,Chiang HI,Wang Y,Genovese KJ,He H,Pevzner IY,Zhou HJ

    更新日期:2011-10-01 00:00:00

  • Polymorphism of the pig acetyl-coenzyme A carboxylase alpha gene is associated with fatty acid composition in a Duroc commercial line.

    abstract::Acetyl-coenzyme A carboxylase alpha (ACACA) catalyses the first committed step in the biosynthesis of long-chain fatty acids (FA) by converting acetyl-CoA into malonyl-CoA. In pigs, the ACACA gene maps to a chromosome 12 QTL with important effects on FA composition. In the present study, we have sequenced the coding r...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2009.01854.x

    authors: Gallardo D,Quintanilla R,Varona L,Díaz I,Ramírez O,Pena RN,Amills M

    更新日期:2009-08-01 00:00:00

  • Genetic diversity and differentiation of Chinese domestic buffalo based on 30 microsatellite markers.

    abstract::To determine genetic diversity and evolutionary relationships among Chinese buffalo populations, 18 indigenous swamp buffalo populations and two introduced river buffalo breeds were genotyped for 30 microsatellite loci. The mean number of alleles across the 30 loci was 8.13, and the expected heterozygosity ranged from...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01648.x

    authors: Zhang Y,Sun D,Yu Y,Zhang Y

    更新日期:2007-12-01 00:00:00

  • A first-generation microsatellite linkage map of the Japanese quail.

    abstract::A linkage map of the Japanese quail (Coturnix japonica) genome was constructed based upon segregation analysis of 72 microsatellite loci in 433 F(2) progeny of 10 half-sib families obtained from a cross between two quail lines of different genetic origins. One line was selected for long duration of tonic immobility, a...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2004.01135.x

    authors: Kayang BB,Vignal A,Inoue-Murayama M,Miwa M,Monvoisin JL,Ito S,Minvielle F

    更新日期:2004-06-01 00:00:00

  • No detectable association of the ESR PvuII mutation with sow productivity in a Meishan x Large White F2 population.

    abstract::The polymorphism at the PvuII recognition site in the ESR gene showed no statistically significant association with sow productivity traits in a Meishan x Large White F2 population. Estimates of the effect on litter size were, however, in the opposite direction and statistically different from previously published est...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2002.00889.x

    authors: Gibson JP,Jiang ZH,Robinson JA,Archibald AL,Haley CS

    更新日期:2002-12-01 00:00:00

  • Non-replication of genome-wide-based associations of efficient food conversion in dairy cows.

    abstract::Animal growth relative to food energy input is of key importance to agricultural production. Several recent studies highlighted genetic markers associated with food conversion efficiency in beef cattle, and there is now a requirement to validate these associations in additional populations and to assess their potentia...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2012.02327.x

    authors: Littlejohn M,Grala T,Sanders K,Walker C,Waghorn G,Macdonald K,Spelman R,Davis S,Snell R

    更新日期:2012-12-01 00:00:00

  • Evaluation of the genetic diversity and population structure of Chinese indigenous horse breeds using 27 microsatellite markers.

    abstract::We determined the genetic diversity and evolutionary relationships among 26 Chinese indigenous horse breeds and two introduced horse breeds by genotyping these animals for 27 microsatellite loci. The 26 Chinese horse breeds come from 12 different provinces. Two introduced horse breeds were the Mongolia B Horse from Mo...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02067.x

    authors: Ling YH,Ma YH,Guan WJ,Cheng YJ,Wang YP,Han JL,Mang L,Zhao QJ,He XH,Pu YB,Fu BL

    更新日期:2011-02-01 00:00:00

  • Genetic diversity analysis of French goat populations reveals selective sweeps involved in their differentiation.

    abstract::After domestication 11 000 years ago in Asia Minor, the goat followed human migration to Europe and Asia. It was then introduced in Africa and is now raised all over the world. In this study, we exploited a dataset composed of 54 000 SNPs (Illumina goat DNA chip) to analyze the genetic diversity of 223 individuals bel...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12752

    authors: Oget C,Servin B,Palhière I

    更新日期:2019-02-01 00:00:00

  • Quantitative trait loci for body growth and sex determination in the hermaphrodite teleost fish Sparus aurata L.

    abstract::Gilthead sea bream (Sparus aurata L.) is an important marine fish in Mediterranean aquaculture. Sex determination by age and/or body weight is a critical life-history trait, the genetic basis for which is largely unknown in this sequential hermaphrodite species. Herein, we performed a partial genome scan to map quanti...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2012.02346.x

    authors: Loukovitis D,Sarropoulou E,Batargias C,Apostolidis AP,Kotoulas G,Tsigenopoulos CS,Chatziplis D

    更新日期:2012-12-01 00:00:00

  • Two new sheep haemoglobins, one of which is replaced by haemoglobin C in anaemia.

    abstract::Two new haemoglobin variants, provisionally named Hb G and Hb H, were found during a survey of 295 Welsh Mountain cross-bred sheep. Both haemoglobins appear to be beta chain variants controlled by genes allelic to those for the common forms Hb A and Hb B. Studies on an anaemic Hb AH and an Hb AG type sheep showed that...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1990.tb03215.x

    authors: Kilgour L,Dixon SC,Tucker EM

    更新日期:1990-01-01 00:00:00

  • A proposal for standardization in forensic equine DNA typing: allele nomenclature for 17 equine-specific STR loci.

    abstract::In this study, a proposal is presented for the allele nomenclature of 17 polymorphic STR loci (AHT4, AHT5, ASB2, ASB17, ASB23, CA425, HMS1, HMS2, HMS3, HMS6, HMS7, HTG4, HTG6, HTG7, HTG10, LEX3 and VHL20) for equine genotyping (Equus caballus). The nomenclature is based on sequence data of the polymorphic region of th...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2009.01975.x

    authors: van de Goor LH,Panneman H,van Haeringen WA

    更新日期:2010-04-01 00:00:00

  • Significant association between SNPs in the superoxide dismutase 3, extracellular (SOD3) gene and resistance to Aeromonas hydrophila in the freshwater mussel Hyriopsis cumingii.

    abstract::Extracellular superoxide dismutase (SOD3) is a major antioxidant enzyme that protects organs from damage by reactive oxygen species (ROS). In this study, the SOD3 gene was identified and characterized from the freshwater mussel Hyriopsis cumingii (Hc-SOD3). The cDNA sequence consists of 763 bp, encoding a protein of 2...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12059

    authors: Wang GL,Li XL,Li JL

    更新日期:2013-12-01 00:00:00

  • Accuracy of genomic selection for age at puberty in a multi-breed population of tropically adapted beef cattle.

    abstract::Genomic selection is becoming a standard tool in livestock breeding programs, particularly for traits that are hard to measure. Accuracy of genomic selection can be improved by increasing the quantity and quality of data and potentially by improving analytical methods. Adding genotypes and phenotypes from additional b...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12362

    authors: Farah MM,Swan AA,Fortes MR,Fonseca R,Moore SS,Kelly MJ

    更新日期:2016-02-01 00:00:00

  • Novel alternative splicing by exon skipping in KIT associated with whole-body roan in an intercrossed population of Landrace and Korean Native pigs.

    abstract::The KIT locus has been suggested to be a strong candidate region linked with whole-body roan in the F(2) population produced by intercrosses between Landrace and Korean Native pigs. In this manuscript, we report the finding of a novel alternative splicing event in the porcine KIT gene that results in the skipping of e...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2011.02225.x

    authors: Lim HT,Zhong T,Cho IC,Seo BY,Kim JH,Lee SS,Ko MS,Park HB,Kim BW,Lee JH,Jeon JT

    更新日期:2011-08-01 00:00:00

  • From information to understanding: the role of model organism databases in comparative and functional genomics.

    abstract::Data integration is key to functional and comparative genomics because integration allows diverse data types to be evaluated in new contexts. To achieve data integration in a scalable and sensible way, semantic standards are needed, both for naming things (standardized nomenclatures, use of key words) and also for kno...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2006.01475.x

    authors: Bult CJ

    更新日期:2006-08-01 00:00:00