Formation of a porphyrin pi-cation radical in the fluoride complex of horseradish peroxidase.

Abstract:

:Horseradish peroxidase (HRP) was oxidized by IrCl6(2-) to a mixture of compounds I and II, the rate of oxidation and the ratio of the mixture being greatly affected by pH (Hayashi & Yamazaki, 1979). Oxidation of HRP by IrCl6(2-) in the presence of fluoride was significantly accelerated. This resulted in the formation of a new compound which is a ferric fluoride complex containing a porphyrin pi-cation radical. The spectrum of the new compound showed a decreased absorption band in the Soret region and a broad band at 570 nm; which was converted to that of the original ferric fluoride complex by addition of ascorbate or hydroquinone. Addition of cyanide slowed down the oxidation of HRP by IrCl6(2-), and the oxidation product was the same as that obtained in the absence of cyanide. Compound I was formed when H2O2 was added to HRP in the presence of fluoride or cyanide. The one-electron reduction potential (Eo') of the oxidized HRP-fluoride complex was measured at several pH values, the Eo' value at pH 7 being 861 +/- 4 mV. The ratio of delta Eo' to delta pH was 49 mV/pH unit.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Farhangrazi ZS,Sinclair R,Powers L,Yamazaki I

doi

10.1021/bi00046a003

subject

Has Abstract

pub_date

1995-11-21 00:00:00

pages

14970-4

issue

46

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • A probe of the active site acidity of carboxypeptidase A.

    abstract::The substrate analogue 2-(1-carboxy-2-phenylethyl)-4-phenylazophenol is a potent competitive inhibitor of carboxypeptidase A. Upon ligation to the active site, the azophenol moiety undergoes a shift of pKa from a value of 8.76 to a value of 4.9; this provides an index of the Lewis acidity of the active site zinc ion. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00358a028

    authors: Mock WL,Tsay JT

    更新日期:1986-05-20 00:00:00

  • A flavin-dependent sulfhydryl oxidase in bovine milk.

    abstract::Both metal and flavin-dependent sulfhydryl oxidases catalyze the net generation of disulfide bonds with the reduction of oxygen to hydrogen peroxide. The first mammalian sulfhydryl oxidase to be described was an iron-dependent enzyme isolated from bovine milk whey (Janolino, V.G., and Swaisgood, H.E. (1975) J. Biol. C...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7016975

    authors: Jaje J,Wolcott HN,Fadugba O,Cripps D,Yang AJ,Mather IH,Thorpe C

    更新日期:2007-11-13 00:00:00

  • Effect of the Met344His mutation on the conformational dynamics of bovine beta-1,4-galactosyltransferase: crystal structure of the Met344His mutant in complex with chitobiose.

    abstract::Beta-1,4-galactosyltransferase (beta4Gal-T1) in the presence of manganese ion transfers galactose from UDP-galactose (UDP-Gal) to N-acetylglucosamine (GlcNAc) that is either free or linked to an oligosaccharide. Crystallographic studies on bovine beta4Gal-T1 have shown that the primary metal binding site is located in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049007+

    authors: Ramakrishnan B,Boeggeman E,Qasba PK

    更新日期:2004-10-05 00:00:00

  • Multiple conformations of the cytidine repressor DNA-binding domain coalesce to one upon recognition of a specific DNA surface.

    abstract::The cytidine repressor (CytR) is a member of the LacR family of bacterial repressors with distinct functional features. The Escherichia coli CytR regulon comprises nine operons whose palindromic operators vary in both sequence and, most significantly, spacing between the recognition half-sites. This suggests a strong ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200205v

    authors: Moody CL,Tretyachenko-Ladokhina V,Laue TM,Senear DF,Cocco MJ

    更新日期:2011-08-09 00:00:00

  • Structural basis for substrate binding and the catalytic mechanism of type III pantothenate kinase.

    abstract::Pantothenate kinase (PanK) catalyzes the first step of the universal five-step coenzyme A (CoA) biosynthetic pathway. The recently characterized type III PanK (PanK-III, encoded by the coaX gene) is distinct in sequence, structure and enzymatic properties from both the long-known bacterial type I PanK (PanK-I, exempli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7018578

    authors: Yang K,Strauss E,Huerta C,Zhang H

    更新日期:2008-02-05 00:00:00

  • Differential release of cellular and scrapie prion proteins from cellular membranes by phosphatidylinositol-specific phospholipase C.

    abstract::The abnormal isoform of the scrapie prion protein PrPSc is both a host-derived protein and a component of the infectious agent causing scrapie. PrPSc and the normal cellular isoform PrPC have different physical properties that apparently arise from a posttranslational event. Both PrP isoforms are covalently modified a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00474a028

    authors: Stahl N,Borchelt DR,Prusiner SB

    更新日期:1990-06-05 00:00:00

  • An unusual catalytic subunit for the cAMP-dependent protein kinase of Dictyostelium discoideum.

    abstract::The cAMP-dependent protein kinase (cAPK) plays an essential role during differentiation and fruit morphogenesis in Dictyostelium discoideum. The presence of an open reading frame on the gene, pkaC (previously named either Dd PK2 or Dd PK3 by different groups), predicts a 73-kDa polypeptide with 54% similarity to the c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00088a003

    authors: Anjard C,Etchebehere L,Pinaud S,Véron M,Reymond CD

    更新日期:1993-09-21 00:00:00

  • Hydrogen bonding in proteins as studied by amide hydrogen D/H fractionation factors: application to staphylococcal nuclease.

    abstract::The D/H fractionation factor (sigma) is the extent to which a hydrogen at a particular site becomes enriched in 2H over 1H relative to the solvent. A growing body of experimental evidence suggest that there is a correlation between the value of the fractionation factor and hydrogen-bond strength, with a lower sigma va...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00170a023

    authors: Loh SN,Markley JL

    更新日期:1994-02-01 00:00:00

  • Effect of salt and pH on the reductive half-reaction of Mycobacterium tuberculosis FprA with NADPH.

    abstract::Despite a number of studies, the formation of the Michaelis complexes between ferredoxin-NADP (+) reductases and NADP(H) eluded detailed investigations by rapid kinetic techniques because of their high formation rates. Moreover, the reversible nature of the reaction of hydride ion transfer between these enzymes and NA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702250h

    authors: Pennati A,Zanetti G,Aliverti A,Gadda G

    更新日期:2008-03-18 00:00:00

  • Recognition by the thyroid hormone receptor of canonical DNA response elements.

    abstract::To shed more light on the molecular requirements for recognition of thyroid response elements (TREs) by thyroid receptors (TRs), we compared the specific aspects of DNA TRE recognition by different TR constructs. Using fluorescence anisotropy, we performed a detailed and hierarchical study of TR-TRE binding. This was ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901282s

    authors: Figueira AC,Lima LM,Lima LH,Ranzani AT,Mule Gdos S,Polikarpov I

    更新日期:2010-02-09 00:00:00

  • Structural characterization of azurin from Pseudomonas aeruginosa and some of its methionine-121 mutants.

    abstract::Azurin from Pseudomonas aeruginosa and two mutants where the methionine ligand has been mutated have been studied in order to directly investigate the functional and structural significance of this ligand in the blue copper proteins. Reduction potentials, X-ray absorption fine structure (XAFS), electron paramagnetic r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00059a013

    authors: Murphy LM,Strange RW,Karlsson BG,Lundberg LG,Pascher T,Reinhammar B,Hasnain SS

    更新日期:1993-03-02 00:00:00

  • Normal modes of prion proteins: from native to infectious particle.

    abstract::Prion proteins (PrP) are the infectious agent in transmissible spongiform encephalopathies (i.e., mad cow disease). To be infectious, prion proteins must undergo a conformational change involving a decrease in α-helical content along with an increase in β-strand content. This conformational change was evaluated by mea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1010514

    authors: Samson AO,Levitt M

    更新日期:2011-03-29 00:00:00

  • Purification and properties of nuclease SP.

    abstract::Single-strand-specific nucleases are a diverse and important group of enzymes that are able to cleave a variety of DNA structures present in duplex molecules. Nuclease SP, an enzyme from spinach, has been purified to apparent homogeneity, allowing for the unambiguous characterization of a number of its physical proper...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00104a026

    authors: Strickland JA,Marzilli LG,Puckett JM Jr,Doetsch PW

    更新日期:1991-10-08 00:00:00

  • Tryptophan 500 and arginine 707 define product and substrate active site binding in soybean lipoxygenase-1.

    abstract::There is much debate whether the fatty acid substrate of lipoxygenase binds "carboxylate-end first" or "methyl-end first" in the active site of soybean lipoxygenase-1 (sLO-1). To address this issue, we investigated the sLO-1 mutants Trp500Leu, Trp500Phe, Lys260Leu, and Arg707Leu with steady-state and stopped-flow kine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0489098

    authors: Ruddat VC,Mogul R,Chorny I,Chen C,Perrin N,Whitman S,Kenyon V,Jacobson MP,Bernasconi CF,Holman TR

    更新日期:2004-10-19 00:00:00

  • XAS investigation of the structure and function of Ni in acireductone dioxygenase.

    abstract::Acireductone dioxygenases (ARDs) are enzymes involved in the methionine recycle pathway, which regulates aspects of the cell cycle. Klebsiella pneumoniae produces two enzymes that share a common polypeptide sequence and differ only in the metal ion present. Reaction of acireductone (1,2-dihydroxy-3-keto-5-methylthiope...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012209a

    authors: Al-Mjeni F,Ju T,Pochapsky TC,Maroney MJ

    更新日期:2002-05-28 00:00:00

  • Crystal structure of recombinant murine adipocyte lipid-binding protein.

    abstract::Adipocyte lipid-binding protein (ALBP) is the adipocyte member of an intracellular hydrophobic ligand-binding protein family. ALBP is phosphorylated by the insulin receptor kinase upon insulin stimulation. The crystal structure of recombinant murine ALBP has been determined and refined to 2.5 A. The final R factor for...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00128a024

    authors: Xu Z,Bernlohr DA,Banaszak LJ

    更新日期:1992-04-07 00:00:00

  • Photolabeling of cardiolipin binding subunits within bovine heart cytochrome c oxidase.

    abstract::Subunits located near the cardiolipin binding sites of bovine heart cytochrome c oxidase (CcO) were identified by photolabeling with arylazido-cardiolipin analogues and detecting labeled subunits by reversed-phase HPLC and HPLC-electrospray ionization mass spectrometry. Two arylazido-containing cardiolipin analogues w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050870z

    authors: Sedlák E,Panda M,Dale MP,Weintraub ST,Robinson NC

    更新日期:2006-01-24 00:00:00

  • HlyC, the internal protein acyltransferase that activates hemolysin toxin: role of conserved histidine, serine, and cysteine residues in enzymatic activity as probed by chemical modification and site-directed mutagenesis.

    abstract::HlyC is an internal protein acyltransferase that activates hemolysin, a toxic protein produced by pathogenic Escherichia coli. Acyl-acyl carrier protein (ACP) is the essential acyl donor. Separately subcloned, expressed, and purified prohemolysin A (proHlyA), HlyC, and [1-14C]myristoyl-ACP have been used to study the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982491u

    authors: Trent MS,Worsham LM,Ernst-Fonberg ML

    更新日期:1999-03-16 00:00:00

  • A method for the separation of hybrids of chromatographically identical oligomeric proteins. Use of 3,4,5,6-tetrahydrophthaloyl groups as a reversible "chromatographic handle".

    abstract::Hybridization experiments with variants of an oligomeric protein often provide important information regarding subunit structure, function, and interactions. In some systems, however, the variants are so similar electrophoretically and chromatographically that purification of individual hybrids is not feasible. Theref...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00646a009

    authors: Gibbons I,Schachman HK

    更新日期:1976-01-13 00:00:00

  • Molecular interactions of N-RAP, a nebulin-related protein of striated muscle myotendon junctions and intercalated disks.

    abstract::N-RAP is a recently discovered muscle-specific protein that is concentrated at the myotendon junctions in skeletal muscle and at the intercalated disks in cardiac muscle. The C-terminal half of N-RAP contains a region with sequence homology to nebulin, while a LIM domain is found at its N-terminus. N-RAP is hypothesiz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982395t

    authors: Luo G,Herrera AH,Horowits R

    更新日期:1999-05-11 00:00:00

  • Cholesterol distribution in renal epithelial cells LLC-PK1 as determined by cholesterol oxidase: evidence that glutaraldehyde fixation masks plasma membrane cholesterol pools.

    abstract::Treatment with cholesterol oxidases has shown that cholesterol is heterogeneously distributed in brush border membranes isolated from the apical domain of the renal and intestinal epithelial cells [Bloj, B., & Zilversmit, D. B. (1982) J. Biol. Chem. 257, 7608-7614; El Yandouzi, E. H., & Le Grimellec, C. (1992) Biochem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00174a046

    authors: el Yandouzi EH,Zlatkine P,Moll G,Le Grimellec C

    更新日期:1994-03-01 00:00:00

  • Kinetics of Escherichia coli helicase II-catalyzed unwinding of fully duplex and nicked circular DNA.

    abstract::Escherichia coli helicase II (UvrD) protein can initiate unwinding of duplex DNA at blunt ends or nicks, although these reactions require excess protein. We have undertaken kinetic studies of these reactions in order to probe the mechanism of initiation of unwinding. DNA unwinding was monitored directly by using agaro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00066a039

    authors: Runyon GT,Lohman TM

    更新日期:1993-04-20 00:00:00

  • Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling.

    abstract::DNA ring closure experiments on short restriction fragments ( approximately 160 bp) bound by the TATA box binding protein (TBP) have demonstrated the formation of negative topoisomers, consistent with crystallographically observed TBP-induced DNA untwisting but in contrast to most previous results on topological effec...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi992263f

    authors: Kahn JD

    更新日期:2000-04-04 00:00:00

  • A putative Fe2+-bound persulfenate intermediate in cysteine dioxygenase.

    abstract::The common reactions of dioxygen, superoxide, and hydroperoxides with thiolates are thought to proceed via persulfenate intermediates, yet these have never been visualized. Here we report a 1.4 A resolution crystal structure of the Fe(2+)-dependent enzyme cysteine dioxygenase (CDO) containing this putative intermediat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801546n

    authors: Simmons CR,Krishnamoorthy K,Granett SL,Schuller DJ,Dominy JE Jr,Begley TP,Stipanuk MH,Karplus PA

    更新日期:2008-11-04 00:00:00

  • Additive transfer free energies of the peptide backbone unit that are independent of the model compound and the choice of concentration scale.

    abstract::With knowledge of individual transfer free energies of chemical groups that become newly exposed on protein denaturation and assuming the group transfer free energy contributions are additive, it should be possible to predict the stability of a protein in the presence of denaturant. Unfortunately, several unresolved i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035908r

    authors: Auton M,Bolen DW

    更新日期:2004-02-10 00:00:00

  • Kinetically competing huntingtin aggregation pathways control amyloid polymorphism and properties.

    abstract::In polyglutamine (polyQ) containing fragments of the Huntington's disease protein huntingtin (htt), the N-terminal 17 amino acid htt(NT) segment serves as the core of α-helical oligomers whose reversible assembly locally concentrates the polyQ segments, thereby facilitating polyQ amyloid nucleation. A variety of aggre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3000929

    authors: Jayaraman M,Mishra R,Kodali R,Thakur AK,Koharudin LM,Gronenborn AM,Wetzel R

    更新日期:2012-04-03 00:00:00

  • Porcine proparathyroid hormone. Identification, biosynthesis, and partial amino acid sequence.

    abstract::Porcine parathyroid gland slices were incubated with 3H-labeled amino acids in order to label tissue proteins. After incubation a crude hormonal extract was prepared and analyzed by chromatography on carboxymethylcellulose. Among the three radioactive peaks which were detected in the eluate, two were identified as par...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00687a018

    authors: Chu LK,Huang WY,Littledike ET,Hamilton JW,Cohn DV

    更新日期:1975-08-12 00:00:00

  • Stable photobleaching of P840 in Chlorobium reaction center preparations: presence of the 42-kDa bacteriochlorophyll a protein and a 17-kDa polypeptide.

    abstract::Simple procedures for the anaerobic preparation of photoactive and stable P840 reaction centers from Chlorobium tepidum and Chlorobium limicola in good yield are presented and quantitated. The subunit composition was tested by cosedimentation in sucrose density gradients. For C. limicola, it minimally comprises four s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00029a039

    authors: Hager-Braun C,Xie DL,Jarosch U,Herold E,Büttner M,Zimmermann R,Deutzmann R,Hauska G,Nelson N

    更新日期:1995-07-25 00:00:00

  • Identification of residues in the monoclonal antitumor antibody L6 important for binding to its tumor antigen.

    abstract::L6 is a monoclonal antitumor antibody which recognizes an epitope located in a 42-residue extracellular domain of a tumor-associated approximately 22 kDa glycoprotein antigen. The L6 mAb localizes to solid tumors in vivo and triggers complement activation and antibody-dependent cellular cytotoxicity. It has been the s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a005

    authors: Stenzel-Johnson PR,Yelton D,Bajorath J

    更新日期:1994-12-06 00:00:00

  • Does the structure of the water-oxidizing photosystem II-manganese complex at room temperature differ from its low-temperature structure? A comparative X-ray absorption study.

    abstract::Detailed information on room-temperature structure and oxidation state of the Photosystem II (PS II) manganese complex is needed to put mechanistic considerations on solid grounds. Because previously this information had not been available, the tetranuclear manganese complex was investigated by X-ray absorption spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9924258

    authors: Meinke C,Solé VA,Pospisil P,Dau H

    更新日期:2000-06-20 00:00:00