Molecular modeling of SWR-0342SA, a beta3-selective agonist, with beta1- and beta3-adrenoceptor.

Abstract:

:The molecular dynamics (MD) simulations study in the formation of the complex between compound SWR-0342SA and beta-ARs suggested that upon binding SWR-0342SA stimulates receptor activation through residues network (Asp104, Leu335 in beta(1)-AR; Asp117, Ser209, Leu303, Ser191 in beta(3)-AR) in an active conformation state. The models suggest that the structural origin of the selectivity of SWR-0342SA to beta(3)-AR vs. beta(1)-AR comes from the following results: (a) the tight interaction between the agonist and the TMs 3, 5, 6 and 2 nd EC loop. Asp117 interacts with the cationic amino group of the agonist molecule. (b) Additional contacts are done with Ser209, Leu303 and Ser191. These results are in good agreement with the binding affinities (pKi values) of SWR-0342SA to beta-AR family expressed in recombinant mammalian cells.

journal_name

Life Sci

journal_title

Life sciences

authors

Ahmed M,Ishiguro M,Nagatomo T

doi

10.1016/j.lfs.2005.09.023

subject

Has Abstract

pub_date

2006-03-20 00:00:00

pages

2019-23

issue

17

eissn

0024-3205

issn

1879-0631

pii

S0024-3205(05)01053-2

journal_volume

78

pub_type

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