SNEP: SNP-derived epitope prediction program for minor H antigens.

Abstract:

:The single nucleotide polymorphism (SNP)-derived Epitope Prediction program (SNEP) is now available to the public. It predicts minor histocompatibility antigens (miHAgs), which are T-cell epitopes containing polymorphic spots, from proteins listed in the SWISS-PROT database. SNEP recognizes polymorphisms (termed VARIANT or CONFLICT in SWISS-PROT) and predicts potential T-cell epitopes within a chosen distance around the polymorphic residue. The prediction algorithm is based on the SYFPEITHI T-cell epitope prediction program. SNEP is able to search for proteins according to their accession numbers, sequence stretches or gene names, for example. The predictions are available for several human leucocyte antigen class I and class II allelic products, which allow for a rapid and precise evaluation of potential miHAgs within polymorphic antigens.

journal_name

Immunogenetics

journal_title

Immunogenetics

authors

Schuler MM,Dönnes P,Nastke MD,Kohlbacher O,Rammensee HG,Stevanovic S

doi

10.1007/s00251-005-0054-5

subject

Has Abstract

pub_date

2005-12-01 00:00:00

pages

816-20

issue

11

eissn

0093-7711

issn

1432-1211

journal_volume

57

pub_type

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