Guanidine hydrochloride induced unfolding of the alpha subunit of tryptophan synthase and of the two alpha proteolytic fragments: evidence for stepwise unfolding of the two alpha domains.

Abstract:

:The relationship between the domain structure of the alpha subunit of Escherichia coli tryptophan synthase and the mechanism of unfolding of the alpha subunit is investigated. Previous studies of the unfolding of the alpha subunit by increasing concentrations of guanidine hydrochloride or urea detected a partially unfolded form of the alpha subunit at intermediate concentrations of either denaturant. The possibility that this partially unfolded form of the alpha subunit results from the preferential unfolding of one of the two domains of the alpha subunit is now investigated. This study utilizes two proteolytic fragments of the alpha subunit, alpha-1 and alpha-2, which have been shown to refold independently and to correspond to two domains of the alpha subunit. The effects of guanidine hydrochloride concentration on the separate alpha-1 and alpha-2 fragments, on the intact alpha subunit, and on the derivative nicked by trypsin (alpha') are compared by measuring ellipticity at 222 nm and by measuring the susceptibility of tyrosyl residues to chemical modification. The results show that guanidine hydrochloride induced unfolding of the alpha subunit results from the stepwise unfolding of the two domains: the alpha-2 fragment and the corresponding domain in the intact alpha subunit are unfolded by low concentrations of guanidine hydrochloride; the alpha-1 fragment and the corresponding domain in the intact alpha subunit are unfolded by higher concentrations of guanidine hydrochloride.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Miles EW,Yutani K,Ogasahara K

doi

10.1021/bi00540a002

subject

Has Abstract

pub_date

1982-05-25 00:00:00

pages

2586-92

issue

11

eissn

0006-2960

issn

1520-4995

journal_volume

21

pub_type

杂志文章
  • Active site of bee venom phospholipase A2: the role of histidine-34, aspartate-64 and tyrosine-87.

    abstract::In bee venom phospholipase A2, histidine-34 probably functions as a Brønsted base to deprotonate the attacking water. Aspartate-64 and tyrosine-87 form a hydrogen bonding network with histidine-34. We have prepared mutants at these positions and studied their kinetic properties. The mutant in which histidine-34 is cha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9528412

    authors: Annand RR,Kontoyianni M,Penzotti JE,Dudler T,Lybrand TP,Gelb MH

    更新日期:1996-04-09 00:00:00

  • Mutation of Di-leucine residues in the juxtamembrane region alters EGF receptor expression.

    abstract::Di-leucine motifs have been implicated in the internalization or degradation of many membrane proteins. The epidermal growth factor receptor (EGFR) contains two di-leucine residues at 658 (TLRRLLQER) and 679 (NQALLRIL). To determine the role of these di-leucine motifs in regulating EGF receptor expression, activity, o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961630+

    authors: Morrison P,Chung KC,Rosner MR

    更新日期:1996-11-19 00:00:00

  • Regulation of the function of eukaryotic DNA topoisomerase I: analysis of the binding step and of the catalytic constants of topoisomerization as a function of DNA topology.

    abstract::It was previously observed that two steps of the reaction of eukaryotic DNA topoisomerase I (topoisomerization and cleavage) depend upon the conformation of the DNA substrate: in both instances the supercoiled form is a more efficient substrate than the relaxed one. This paper reports the analysis of two other steps o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00487a024

    authors: Caserta M,Amadei A,Camilloni G,Di Mauro E

    更新日期:1990-09-04 00:00:00

  • Quantitative studies on the melittin-induced leakage mechanism of lipid vesicles.

    abstract::We have investigated, both experimentally and theoretically, the efflux of carboxyfluorescein (a self-quenching fluorescent dye) from vesicles of different sizes and lipid species (POPC, DOPC) after having added the bee venom peptide melittin. This comprises quantitative analyses regarding the extent of lipid-associat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971009p

    authors: Rex S,Schwarz G

    更新日期:1998-02-24 00:00:00

  • Looking at human cytosolic sialidase NEU2 structural features with an interdisciplinary approach.

    abstract::Circular dichroism (CD) spectra at variable temperatures have been recorded for human cytosolic sialidase NEU2 in buffered water solutions and in the presence of divalent cations. The results show the prevalence of β-strands together with a considerable amount of α-helical structure, while in the solid state, from bot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500249r

    authors: Monti E,Benaglia G,Mozzi A,Fusi P,Longhi G,Gangemi F,Castiglioni E,Woody RW,Fornili SL,Abbate S

    更新日期:2014-08-19 00:00:00

  • Studies of the cryptic allylic pyrophosphate isomerase activity of trichodiene synthase using the anomalous substrate 6,7-dihydrofarnesyl pyrophosphate.

    abstract::Two enantiomeric analogues of farnesyl pyrophosphate (1) were tested as inhibitors and anomalous substrates of trichodiene synthase, which catalyzes the cyclization of trans,trans-farnesyl pyrophosphate (1) to the sesquiterpene hydrocarbon trichodiene (2). The reaction has been shown to involve preliminary isomerizati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00475a011

    authors: Cane DE,Pawlak JL,Horak RM

    更新日期:1990-06-12 00:00:00

  • Human secreted carbonic anhydrase: cDNA cloning, nucleotide sequence, and hybridization histochemistry.

    abstract::Complementary DNA clones coding for the human secreted carbonic anhydrase isozyme (CA VI) have been isolated and their nucleotide sequences determined. These clones identify a 1.45-kb mRNA that is present in high levels in parotid submandibular salivary glands but absent in other tissues such as the sublingual gland, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00216a035

    authors: Aldred P,Fu P,Barrett G,Penschow JD,Wright RD,Coghlan JP,Fernley RT

    更新日期:1991-01-15 00:00:00

  • Light-induced global conformational change of photoactive yellow protein in solution.

    abstract::The light-induced global conformational change of photoactive yellow protein was directly observed by small-angle X-ray scattering (SAXS). The N-terminal 6, 15, or 23 amino acid residues were enzymatically truncated (T6, T15, or T23, respectively), and their near-UV intermediates were accumulated under continuous illu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264768

    authors: Imamoto Y,Kamikubo H,Harigai M,Shimizu N,Kataoka M

    更新日期:2002-11-19 00:00:00

  • Crystal structure of adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum.

    abstract::Adenosine 5'-phosphosulfate (APS) kinase catalyzes the second reaction in the two-step conversion of inorganic sulfate to 3'-phosphoadenosine 5'-phosphosulfate (PAPS). This report presents the 2.0 A resolution crystal structure of ligand-free APS kinase from the filamentous fungus, Penicillium chrysogenum. The enzyme ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9924157

    authors: MacRae IJ,Segel IH,Fisher AJ

    更新日期:2000-02-22 00:00:00

  • Certain metal ions are inhibitors of cytochrome b6f complex 'Rieske' iron-sulfur protein domain movements.

    abstract::Many current models of the Q cycle for the cytochrome (cyt) b6f and the cyt bc1 complexes incorporate 'Rieske' iron-sulfur protein (ISP) domain movements to gate electron transfer and to ensure high yields of proton shuttling. It was previously proposed that copper ions, which bind at a site distant from the quinol ox...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015996k

    authors: Roberts AG,Bowman MK,Kramer DM

    更新日期:2002-03-26 00:00:00

  • Catalytic characterization of 4a-hydroxytetrahydropterin dehydratase.

    abstract::The cofactor product of the aromatic amino acid hydroxylases, 4a-hydroxy-6(R)-tetrahydrobiopterin, requires dehydration before tetrahydrobiopterin can be regenerated by dihydropteridine reductase. Carbinolamine dehydration occurs nonenzymatically, but the reaction is also catalyzed by 4a-hydroxytetrahydropterin dehydr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00017a011

    authors: Rebrin I,Bailey SW,Boerth SR,Ardell MD,Ayling JE

    更新日期:1995-05-02 00:00:00

  • Temperature dependence of the epidermal growth factor receptor signaling network can be accounted for by a kinetic model.

    abstract::Stimulation of isolated hepatocytes with epidermal growth factor (EGF) causes rapid tyrosine phosphorylation of the EGF receptor (EGFR) and adapter/target proteins, which was monitored with 1 and 2 s resolution at 37, 20, and 4 degrees C. The temporal responses detected for multiple signaling proteins involve both tra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011506c

    authors: Moehren G,Markevich N,Demin O,Kiyatkin A,Goryanin I,Hoek JB,Kholodenko BN

    更新日期:2002-01-08 00:00:00

  • Cloning of synthetic deoxyribonucleic acid that codes for embryonic cardiac myosin light-chain polypeptide.

    abstract::Double-stranded complementary deoxyribonucleic acid (cDNA) transcribed in vitro from a partially pure myosin light-chain messenger ribonucleic acid (mRNA) of the chick embryonic heart was cloned in Escherichia coli strain chi 1776 by using the HindIII cleavage site in the plasmid pBR322. The insertion of essentially f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00592a019

    authors: Arnold HH,Siddiqui MA

    更新日期:1979-12-11 00:00:00

  • Evidence that eosin-5-maleimide binds close to the anion transport site of human erythrocyte band 3: a fluorescence quenching study.

    abstract::The interaction between eosin-5-maleimide (EMA), an inhibitor of the anion transport protein, band 3, and I-, a transportable substrate, was investigated by fluorescence quenching. The Stern-Volmer plot for the quenching reaction between EMA-labeled band 3 and I- exhibits downward curvature both in human erythrocyte g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00014a045

    authors: Pan RJ,Cherry RJ

    更新日期:1995-04-11 00:00:00

  • Mapping global angular transitions of proteins in assemblies using multiple extrinsic reporter groups.

    abstract::The fluorescence polarization intensities from fluorescent probes and the electron paramagnetic resonance spectra from spin probes, specifically modifying elements of a biological assembly such as myosin sulfhydryl 1 (SH1) in muscle fibers, are interpreted in terms of probe order parameters using a model-independent m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00116a029

    authors: Burghardt TP,Ajtai K

    更新日期:1992-01-14 00:00:00

  • The amidotransferase family of enzymes: molecular machines for the production and delivery of ammonia.

    abstract::The amidotransferase family of enzymes utilizes the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations. A well-characterized example of the structure and mechani...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi990871p

    authors: Raushel FM,Thoden JB,Holden HM

    更新日期:1999-06-22 00:00:00

  • Dissecting cytochrome P450 3A4-ligand interactions using ritonavir analogues.

    abstract::Cytochrome P450 3A4 (CYP3A4) inhibitors ritonavir and cobicistat, currently administered to HIV patients as pharmacoenhancers, were designed on the basis of the chemical structure/activity relationships rather than the CYP3A4 crystal structure. To better understand the structural basis for CYP3A4 inhibition and the li...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4005396

    authors: Sevrioukova IF,Poulos TL

    更新日期:2013-07-02 00:00:00

  • Binding of metal cyanide complexes to bovine liver rhodanese in the crystalline state.

    abstract::Bovine liver rhodanese, which catalyzes the transfer of sulfur atoms between a variety of sulfur donor and sulfur acceptor substrates, is inhibited by metal cyanide complexes [Volini, M., Van Sweringen, B., & Chen, F.-Sh. (1978) Arch. Biochem. Biophys. 191, 205-215]. Crystallographic studies are described which reveal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00281a026

    authors: Lijk LJ,Kalk KH,Brandenburg NP,Hol WG

    更新日期:1983-06-07 00:00:00

  • Catalytically active cross-species heterodimers of thymidylate synthase.

    abstract::Thymidylate synthase (TS) is a highly conserved homodimeric enzyme with two active sites, each of which contains amino acid residues from both subunits. We show that the conservation at the subunit interface between Escherichia coli TS and Lactobacillus casei TS is sufficient to permit the formation of a cross-species...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a002

    authors: Greene PJ,Maley F,Pedersen-Lane J,Santi DV

    更新日期:1993-10-05 00:00:00

  • Chromatin condensing functions of the linker histone C-terminal domain are mediated by specific amino acid composition and intrinsic protein disorder.

    abstract::Linker histones bind to the nucleosomes and linker DNA of chromatin fibers, causing changes in linker DNA structure and stabilization of higher order folded and oligomeric chromatin structures. Linker histones affect chromatin structure acting primarily through their approximately 100-residue C-terminal domain (CTD). ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801636y

    authors: Lu X,Hamkalo B,Parseghian MH,Hansen JC

    更新日期:2009-01-13 00:00:00

  • The role of Gly-4 of human cystatin A (stefin A) in the binding of target proteinases. Characterization by kinetic and equilibrium methods of the interactions of cystatin A Gly-4 mutants with papain, cathepsin B, and cathepsin L.

    abstract::The importance of the evolutionarily conserved Gly-4 residue for the affinity and kinetics of interaction of cystatin A with several cysteine proteinases was assessed by site-directed mutagenesis. Even the smallest replacement, by Ala, resulted in approximately 1000-, approximately 10- and approximately 6000-fold decr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980026r

    authors: Estrada S,Nycander M,Hill NJ,Craven CJ,Waltho JP,Björk I

    更新日期:1998-05-19 00:00:00

  • Cross-linking of a monomeric 39/34-kDa dispase fragment of von Willebrand factor (Leu-480/Val-481-Gly-718) to the N-terminal region of the alpha-chain of membrane glycoprotein Ib on intact platelets with bis(sulfosuccinimidyl) suberate.

    abstract::A 39/34-kilodalton (kDa) monomeric dispase fragment of von Willebrand factor (vWF) has been purified by heparin affinity chromatography. Detailed structural analysis of the individual 39- and 34-kDa fragments indicated that they had identical amino acid sequences extending from Leu-480/Val-481 to Gly-718 with an intra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00447a010

    authors: Andrews RK,Gorman JJ,Booth WJ,Corino GL,Castaldi PA,Berndt MC

    更新日期:1989-10-17 00:00:00

  • Ethylene enhances reactivity of superoxide with peroxidase to form the oxy-ferrous complex.

    abstract::Ethylene and its analogues acetylene, carbon monoxide, and propylene inhibited the rate of oxidation of indole-3-acetic acid by peroxidase. Annulment of this effect by addition of superoxide dismutase showed that inhibition occurred only in the presence of the superoxide anion radical (O2-.). Kinetic and spectral data...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00276a019

    authors: Smith AM,Morrison WL,Milham PJ

    更新日期:1983-03-29 00:00:00

  • Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent L-Arginine α-Deaminase, γ-Hydroxylase in the Enduracididine Biosynthetic Pathway.

    abstract::L-Enduracididine (L-End) is a nonproteinogenic amino acid found in a number of bioactive peptides, including the antibiotics teixobactin, enduracidin, and mannopeptimycin. The potent activity of these compounds against antibiotic-resistant pathogens like MRSA and their novel mode of action have garnered considerable i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01016

    authors: Han L,Schwabacher AW,Moran GR,Silvaggi NR

    更新日期:2015-12-01 00:00:00

  • Monoclonal antibodies against distinct determinants of histone H5 bind to chromatin.

    abstract::A series of monoclonal antibodies specific for distinguishable epitopes in chromosomal protein histone H5 were obtained from mice immunized with either free H5 or H5 . RNA complexes. The antibodies elicited by H5 could be distinguished from those elicited by H5 . RNA by their binding to native or acid-denatured H5, by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00310a012

    authors: Mendelson E,Bustin M

    更新日期:1984-07-17 00:00:00

  • Characterization of multiple forms of the Ah receptor: recognition of a dioxin-responsive enhancer involves heteromer formation.

    abstract::We have employed a combination of gel retardation, protein-DNA cross-linking, and protein-protein cross-linking techniques to further examine the 2,3,7,8-tetrachlorodibenzo-p- dioxin-(TCDD-) dependent changes in the Ah receptor that result in a DNA-binding conformation. Gel retardation analysis of DNA-Sepharose chroma...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00225a026

    authors: Gasiewicz TA,Elferink CJ,Henry EC

    更新日期:1991-03-19 00:00:00

  • X-ray absorption spectroscopy comparison of the active site structures of Phanerochaete chrysosporium lignin peroxidase isoenzymes H2, H3, H4, H5, H8, and H10.

    abstract::The iron heme and its immediate environment can provide information that is pivotal to our understanding of the structural and mechanistic features that confer unusual properties to the heme peroxidases. X-ray absorption spectroscopy (XAS), which is ideally suited for the investigation of the local environment and ele...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00040a032

    authors: Sinclair R,Copeland B,Yamazaki I,Powers L

    更新日期:1995-10-10 00:00:00

  • Mechanism of irreversible inhibition of O2 evolution in photosystem II by Tris(hydroxymethyl)aminomethane.

    abstract::The dark reaction of tris(hydroxymethyl)aminomethane (Tris) with the O2-evolving center of photosystem II (PSII) in the S1 state causes irreversible inhibition of O2 evolution. Similar inhibition is observed for several other amines: NH3, CH3NH2, (CH3)2NH, ethanolamine, and 2-amino-2-ethyl-1,3-propanediol. In PSII mem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00246a003

    authors: Rickert KW,Sears J,Beck WF,Brudvig GW

    更新日期:1991-08-13 00:00:00

  • Mechanisms by which human DNA primase chooses to polymerize a nucleoside triphosphate.

    abstract::Human DNA primase synthesizes short RNA primers that DNA polymerase alpha then elongates during the initiation of all new DNA strands. Even though primase misincorporates NTPs at a relatively high frequency, this likely does not impact the final DNA product since the RNA primer is replaced with DNA. We used an extensi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9019516

    authors: Urban M,Joubert N,Purse BW,Hocek M,Kuchta RD

    更新日期:2010-02-02 00:00:00

  • High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approach.

    abstract::A new method is described for determining molecular structures from NMR data. The approach utilizes 2D NOESY back-calculations to generate simulated spectra for structures obtained from distance geometry (DG) computations. Comparison of experimental and back-calculated spectra, including analysis of cross-peak buildup...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00454a005

    authors: Summers MF,South TL,Kim B,Hare DR

    更新日期:1990-01-16 00:00:00