Modeling imatinib-treated chronic myelogenous leukemia: reducing the complexity of agent-based models.

abstract：:DNA and protein sequence comparisons are performed by a number of computational algorithms. Most of these algorithms search for the alignment of two sequences that optimizes some alignment score. It is an important problem to assess the statistical significance of a given score. In this paper we use newly developed me...

journal_title：Bulletin of mathematical biology

authors： Goldstein L,Waterman MS

更新日期：1992-09-01 00:00:00

abstract：:Aggregation of membrane molecules is a crucial phenomenon in developing organisms, a classic example being the aggregation of post-synaptic receptors during synaptogenesis. Our understanding of the molecular events involved is improving, but most models of the aggregation or concentration process do not address bindin...

journal_title：Bulletin of mathematical biology

authors： Stollberg J

更新日期：1995-09-01 00:00:00

abstract：:A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. Given a sequence, explicit formulae are derived to select (1) its globally most probable core structure from a structure library; (2) its globally most probable alignment to a given core structure; (3) its most...

journal_title：Bulletin of mathematical biology

authors： Lathrop RH,Rogers RG Jr,Smith TF,White JV

更新日期：1998-11-01 00:00:00

abstract：:This paper presents a biomechanical model for the small pits, called crypts, that line the colon. A continuum approach is adopted, with the crypt epithelium modelled as a growing beam attached to the underlying lamina by cell bonds, which generate tension within the layer. These cell attachments are assumed to be visc...

journal_title：Bulletin of mathematical biology

authors： Edwards CM,Chapman SJ

更新日期：2007-08-01 00:00:00

abstract：:A stochastic analog to a deterministic model describing subpopulation emergence in heterogeneous tumors is developed. The resulting system is described by the Fokker-Planck or forward Kolmogorov equation. A finite element approach for the numerical solution to this equation is described. Four biological and clinical s...

journal_title：Bulletin of mathematical biology

authors： Michelson S,Ito K,Tran HT,Leith JT

更新日期：1989-01-01 00:00:00

abstract：:Many neurons in mammalian sensory systems exhibit On and Off responses when given appropriate excitatory and inhibitory stimuli. In some instances, such neurons can also exhibit a Mixed response where diminished On and Off responses are both present. In this manuscript, we present a simple single cell model for these ...

journal_title：Bulletin of mathematical biology

authors： Latulippe J,Pernarowski M

更新日期：2009-01-01 00:00:00

abstract：:It is widely believed that the slowest dispersal strategy is selected in the evolutional if the environment is temporally invariant but spatially heterogeneous. Authors claim in this paper that this belief is true only if random dispersals with constant motility are considered. However, if a dispersal strategy with fi...

journal_title：Bulletin of mathematical biology

authors： Kim YJ,Kwon O,Li F

更新日期：2013-12-01 00:00:00

abstract：:The feedback dynamics from mosquito to human and back to mosquito involve considerable time delays due to the incubation periods of the parasites. In this paper, taking explicit account of the incubation periods of parasites within the human and the mosquito, we first propose a delayed Ross-Macdonald model. Then we ca...

journal_title：Bulletin of mathematical biology

authors： Ruan S,Xiao D,Beier JC

更新日期：2008-05-01 00:00:00

abstract：:We formulate a mathematical model for food collection and production of workers and nymphs in 2 species of mound building termites. We maximise the number of nymphs (reproductives) produced by each colony over its lifetime with respect to the proportion of eggs that hatch as nymphs as opposed to workers. The results p...

journal_title：Bulletin of mathematical biology

authors： Cameron DA,Ivers DJ,Evans TA,Myerscough MR

更新日期：2008-01-01 00:00:00

abstract：:Cell polarization is an important part of the response of eukaryotic cells to stimuli, and forms a primary step in cell motility, differentiation, and many cellular functions. Among the important biochemical players implicated in the onset of intracellular asymmetries that constitute the early phases of polarization a...

journal_title：Bulletin of mathematical biology

authors： Walther GR,Marée AF,Edelstein-Keshet L,Grieneisen VA

更新日期：2012-11-01 00:00:00

abstract：:Over the last 25 years, reforms in undergraduate biology education have transformed the way biology is taught at many institutions of higher education. This has been fueled in part by a burgeoning discipline-based education research community, which has advocated for evidence-based instructional practices based on fin...

journal_title：Bulletin of mathematical biology

authors： Aikens ML

更新日期：2020-05-13 00:00:00

abstract：:The scaling and shift of the gene expression boundary in a developing embryo are two key problems with regard to morphogen gradient formation in developmental biology. In this study, a bigradient model was applied to a nonlinear reaction diffusion system (NRDS) to investigate the location of morphogen gene expression ...

journal_title：Bulletin of mathematical biology

authors： Li WS,Shao YZ

更新日期：2014-06-01 00:00:00

abstract：:Microtubules (MTs) are protein filaments found in all eukaryotic cells which are crucial for many cellular processes including cell movement, cell differentiation, and cell division. Due to their role in cell division, they are often used as targets for chemotherapy drugs used in cancer treatment. Experimental studies...

journal_title：Bulletin of mathematical biology

authors： Honoré S,Hubert F,Tournus M,White D

更新日期：2019-03-01 00:00:00

abstract：:Host bird species of the Eurasian Cuckoo, Cuculus canorus, often display egg-discrimination behaviour but chick-rejection behaviour has never been reported. In this paper, we analyse a host-cuckoo association in which both population dynamics and evolutionary dynamics are explored in a discrete-time model. We introduc...

journal_title：Bulletin of mathematical biology

authors： Planqué R,Britton NF,Franks NR,Peletier MA

更新日期：2002-11-01 00:00:00

abstract：:A system of differential equations for the control of tumor growth cells in a cycle nonspecific chemotherapy is analyzed. Spontaneously acquired drug resistance is taken into account, and a criterion for the selection of chemotherapeutic treatment is used. This criterion purports to describe the possibility of improve...

journal_title：Bulletin of mathematical biology

authors： Costa MI,Boldrini JL

更新日期：1997-03-01 00:00:00

abstract：:To investigate morphogenesis and in particular circularization mechanisms in young mycelia, we observe cultures of the zygomycete Mucor spinosus and develop discrete models of two-dimensional filamental branching growth. The models are based on the hypothesis that the fungus secretes a regulatory substance that diffus...

journal_title：Bulletin of mathematical biology

authors： Indermitte C,Liebling M,Clémençon H

更新日期：1994-07-01 00:00:00

abstract：:We study a recently discovered class of models for plateau bursting, inspired by models for endocrine pituitary cells. In contrast to classical models for fold-homoclinic (square-wave) bursting, the spikes of the active phase are not supported by limit cycles of the frozen fast subsystem, but are transient oscillation...

journal_title：Bulletin of mathematical biology

authors： Stern JV,Osinga HM,LeBeau A,Sherman A

更新日期：2008-01-01 00:00:00

abstract：:The multifractal analysis of binary images of DNA is studied in order to define a methodological approach to the classification of DNA sequences. This method is based on the computation of some multifractality parameters on a suitable binary image of DNA, which takes into account the nucleotide distribution. The binar...

journal_title：Bulletin of mathematical biology

authors： Cattani C,Pierro G

更新日期：2013-09-01 00:00:00

abstract：:To obtain the correlation dimension and entropy from an experimental time series we derive estimators for these quantities together with expressions for their variances using a maximum likelihood approach. The validity of these expressions is supported by Monte Carlo simulations. We illustrate the use of the estimator...

journal_title：Bulletin of mathematical biology

authors： Olofsen E,Degoede J,Heijungs R

更新日期：1992-01-01 00:00:00

abstract：:Measures of sexual dimorphism have been used extensively to predict the social organization and ecology of animal and human populations. There is, however, no universally accepted measure of phenotypic differences between the sexes. Most indices of sexual dimorphism fail to incorporate all of the information contained...

journal_title：Bulletin of mathematical biology

authors： Ipiña SL,Durand AI

更新日期：2000-09-01 00:00:00

abstract：:Two algorithms for the efficient identification of segment neighborhoods are presented. A segment neighborhood is a set of contiguous residues that share common features. Two procedures are developed to efficiently find estimates for the parameters of the model that describe these features and for the residues that de...

journal_title：Bulletin of mathematical biology

authors： Auger IE,Lawrence CE

更新日期：1989-01-01 00:00:00

abstract：:The simulation of biological systems is often plagued by a high level of noise in the data, as well as by models containing a large number of correlated parameters. As a result, the parameters are poorly identified by the data, and the reliability of the model predictions may be questionable. Bayesian sampling methods...

journal_title：Bulletin of mathematical biology

authors： Haario H,Kalachev L,Laine M

更新日期：2009-10-01 00:00:00

abstract：:Posttranslational modification of proteins is key in transmission of signals in cells. Many signaling pathways contain several layers of modification cycles that mediate and change the signal through the pathway. Here, we study a simple signaling cascade consisting of n layers of modification cycles such that the modi...

journal_title：Bulletin of mathematical biology

authors： Feliu E,Knudsen M,Andersen LN,Wiuf C

更新日期：2012-01-01 00:00:00

abstract：:Trichloroethylene (TCE) is an industrial chemical and an environmental contaminant. TCE and its metabolites may be carcinogenic and affect human health. Physiologically based pharmacokinetic (PBPK) models that differ in compartmentalization are developed for TCE metabolism in humans, and the focus of this investigatio...

journal_title：Bulletin of mathematical biology

authors： Yokley KA,Evans MV

更新日期：2007-11-01 00:00:00

abstract：:Here, we consider a game-theoretic model of multilevel selection in which individuals compete based on their payoff and groups also compete based on the average payoff of group members. Our focus is on multilevel social dilemmas: games in which individuals are best off cheating, while groups of individuals do best whe...

journal_title：Bulletin of mathematical biology

authors： Cooney DB

更新日期：2020-05-30 00:00:00

abstract：:A coupled model is presented for simulating physical and biological dynamics in fresh water lakes. The physical model rests upon the assumption that the turbulent kinetic energy in a water column of the lake is fully contained in a mixed layer of variable depth. Below this layer the mechanical energy content is assume...

journal_title：Bulletin of mathematical biology

authors： Franke U,Hutter K,Jöhnk K

更新日期：1999-03-01 00:00:00

abstract：:We consider organisms which use a renewal strategy such as run-tumble when moving in space, for example to perform chemotaxis in chemical gradients. We derive a diffusion approximation for the motion, applying a central limit theorem due to Anscombe for renewal-reward processes; this theorem has not previously been ap...

journal_title：Bulletin of mathematical biology

authors： Thygesen UH

更新日期：2016-03-01 00:00:00

abstract：:A dynamic model for cell differentiation, where cells with internal chemical reaction dynamics interact with each other and replicate was studied. It led to spontaneous differentiation of cells and determination, as discussed in the isologous diversification. The following features of the differentiation were obtained...

journal_title：Bulletin of mathematical biology

authors： Furusawa C,Kaneko K

更新日期：1998-07-01 00:00:00

abstract：:The fluorescent dye carboxyfluorescein diacetate succinimidyl ester (CFSE) classifies proliferating cell populations into groups according to the number of divisions each cell has undergone (i.e., its division class). The pulse labeling of cells with radioactive thymidine provides a means to determine the distribution...

journal_title：Bulletin of mathematical biology

authors： Lee HY,Perelson AS

更新日期：2008-01-01 00:00:00

abstract：:A significant conceptual difficulty in the use of switching systems to model regulatory networks is the presence of so-called "black walls," co-dimension 1 regions of phase space with a vector field pointing inward on both sides of the hyperplane. Black walls result from the existence of direct negative self-regulatio...

journal_title：Bulletin of mathematical biology

authors： Fan G,Cummins B,Gedeon T

更新日期：2016-06-01 00:00:00