Effects of spatial smoothing on fMRI group inferences.

Abstract:

:The analysis of functional magnetic resonance imaging (fMRI) data involves multiple stages of data pre-processing before the activation can be statistically detected. Spatial smoothing is a very common pre-processing step in the analysis of functional brain imaging data. This study presents a broad perspective on the influence of spatial smoothing on fMRI group activation results. The data obtained from 20 volunteers during a visual oddball task were used for this study. Spatial smoothing using an isotropic gaussian filter kernel with full width at half maximum (FWHM) sizes 2 to 30 mm with a step of 2 mm was applied in two levels - smoothing of fMRI data and/or smoothing of single-subject contrast files prior to general linear model random-effects group analysis generating statistical parametric maps. Five regions of interest were defined, and several parameters (coordinates of nearest local maxima, t value, corrected threshold, effect size, residual values, etc.) were evaluated to examine the effects of spatial smoothing. The optimal filter size for group analysis is discussed according to various criteria. For our experiment, the optimal FWHM is about 8 mm. We can conclude that for robust experiments and an adequate number of subjects in the study, the optimal FWHM for single-subject inference is similar to that for group inference (about 8 mm, according to spatial resolution). For less robust experiments and fewer subjects in the study, a higher FWHM would be optimal for group inference than for single-subject inferences.

journal_name

Magn Reson Imaging

authors

Mikl M,Marecek R,Hlustík P,Pavlicová M,Drastich A,Chlebus P,Brázdil M,Krupa P

doi

10.1016/j.mri.2007.08.006

subject

Has Abstract

pub_date

2008-05-01 00:00:00

pages

490-503

issue

4

eissn

0730-725X

issn

1873-5894

pii

S0730-725X(07)00395-5

journal_volume

26

pub_type

杂志文章
  • Voxelwise analysis of diffusion MRI of cervical spinal cord using tract-based spatial statistics.

    abstract::Robust voxelwise analysis using tract-based spatial statistics (TBSS) together with permutation statistical method is standardly used in analyzing diffusion tensor imaging (DTI) of brain. A similar analytical method could be useful when studying DTI of cervical spinal cord. Based on anatomical data of sixty-four healt...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2020.07.008

    authors: Dostál M,Keřkovský M,Staffa E,Bednařík J,Šprláková-Puková A,Mechl M

    更新日期:2020-11-01 00:00:00

  • Utility of magnetization prepared GRE MRI for the detection of focal liver lesions.

    abstract::We compared the efficacy of rapidly acquired magnetization prepared gradient-echo (MP-GRE) sequences with CT and standard MRI pulse sequences for the detection of focal liver lesions. Fourteen patients with 28 focal liver lesions were scanned. TI times of 300, 450, and 600 ms were used. MP-GRE lesion conspicuity was c...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(94)92198-9

    authors: Winter TC 3rd,Freeny PC,Nghiem HV,Thomas CR Jr

    更新日期:1994-01-01 00:00:00

  • Lesion load measurements in multiple sclerosis: the effect of incorporating magnetization transfer contrast in fast-FLAIR sequence.

    abstract::We compared the ability and reproducibility of a fast fluid-attenuated inversion recovery (fast-FLAIR) sequence with and without a magnetization transfer (MT) pulse for detecting and measuring multiple sclerosis (MS)-related abnormalities on magnetic resonance imaging (MRI) scans from 20 patients. The Contrast-to-Nois...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(98)00182-9

    authors: Filippi M,Rocca MA,Mastronardo G,Comi G

    更新日期:1999-04-01 00:00:00

  • High-resolution magnetic resonance flow imaging in a model of porous bone-implant interface.

    abstract:PURPOSE:To evaluate the application of high-resolution MRI methodology for characterizing the fluid velocity field and evaluate fluid shear field within a simplified in vitro model of a bone-implant interface. MATERIALS AND METHODS:The study used a specific micromotion canine bone implant that has been used for over a...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2005.11.001

    authors: Conroy MJ,Pédrono A,Bechtold JE,Søballe K,Ambard D,Swider P

    更新日期:2006-06-01 00:00:00

  • NMR-contrast enhancement of experimental brain tumors with MnTPPS: qualitative evaluation by in vivo relaxometry.

    abstract::The applicability of the synthetic manganese porphyrin MnTPPS as tumor-selective MRI-contrast agent for brain tumors was investigated quantitatively by in vivo relaxometry. To exclude toxic effects of side products, the purification method for MnTPPS was improved. As a result, MnTPPS+Cl- (free acid) with a purity of m...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(93)90007-z

    authors: Bockhorst K,Hoehn-Berlage M,Ernestus RI,Tolxdorf T,Hossmann KA

    更新日期:1993-01-01 00:00:00

  • Influence of attention focus on neural activity in the human spinal cord during thermal sensory stimulation.

    abstract::Perceptions of sensation and pain in healthy people are believed to be the net result of sensory input and descending modulation from brainstem and cortical regions depending on emotional and cognitive factors. Here, the influence of attention on neural activity in the spinal cord during thermal sensory stimulation of...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2010.07.012

    authors: Stroman PW,Coe BC,Munoz DP

    更新日期:2011-01-01 00:00:00

  • Analysis of time reduction methods for magnetic resonance elastography of the brain.

    abstract::Magnetic resonance elastography (MRE) uses a phase-contrast MRI technique to image shear wave propagation in tissue followed by the mathematical inversion of the equations of motion governing tissue mechanics to noninvasively image tissue stiffness. This work investigates the impact of various MR sampling strategies d...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2010.06.016

    authors: Murphy MC,Glaser KJ,Manduca A,Felmlee JP,Huston J 3rd,Ehman RL

    更新日期:2010-12-01 00:00:00

  • Comparison of BLADE and conventional T2-TSE sequences for the sagittal visualization of the cervical spinal cord in multiple sclerosis patients - a case report.

    abstract::The purpose of this study is to report the significant differences found in the identification of lesions in cervical spinal cord of two patients with multiple sclerosis when using the BLADE T2-TSE and BLADE T2-TIRM sequences as opposed to the conventional T2-TSE and T2-TIRM sequences for sagittal acquisition at 1.5T....

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.07.008

    authors: Lavdas E,Mavroidis P,Topaltzikis T,Slatinopoulos V,Roka V,Vlachopoulou A,Papanikolaou N,Stathakis S,Kapsalaki E,Batsikas G

    更新日期:2013-12-01 00:00:00

  • Two-point method for T1 estimation with optimized gradient-echo sequence.

    abstract::Relaxation times estimation methods play a central role in various problems, such as magnetic resonance (MR) hardware calibration, tissue characterization, or temperature measurement. Previous studies have proposed optimization criteria to estimate the relaxation time T1 faster than with a multipoint method leading to...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(99)00092-2

    authors: Imran J,Langevin F,Saint-Jalmes H

    更新日期:1999-11-01 00:00:00

  • Fast and high-resolution quantitative mapping of tissue water content with full brain coverage for clinically-driven studies.

    abstract::An efficient method for obtaining longitudinal relaxation time (T1) maps is based on acquiring two spoiled gradient recalled echo (SPGR) images in steady states with different flip angles, which has also been extended, with additional acquisitions, to obtain a tissue water content (M0) map. Several factors, including ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.08.001

    authors: Sabati M,Maudsley AA

    更新日期:2013-12-01 00:00:00

  • Influence of cholecystectomy on the flow dynamic pattern of bile in the extrahepatic bile duct: Assessment by cine-dynamic MRCP with spatially-selective IR pulse.

    abstract:PURPOSE:To evaluate the influence of cholecystectomy on the flow dynamic pattern of bile in the extrahepatic bile duct by using cine-dynamic MRCP with spatially-selective inversion-recovery (IR) pulse non-invasively. MATERIALS AND METHODS:56 patients with cholecystectomy and 48 control subjects without cholecystectomy...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2020.08.016

    authors: Sotozono H,Tamada T,Kanki A,Yasokawa K,Fukunaga T,Yamamoto A,Ito K

    更新日期:2020-12-01 00:00:00

  • Background parenchymal enhancement in the contralateral normal breast of patients undergoing neoadjuvant chemotherapy measured by DCE-MRI.

    abstract::The purpose of this study was to analyze background parenchymal enhancement (BPE) in the contralateral normal breast of cancer patients during the course of neoadjuvant chemotherapy (NAC). Forty-five subjects were analyzed. Each patient had three MRIs, one baseline (B/L) and two follow-up (F/U) studies. The fibrogland...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.07.014

    authors: Chen JH,Yu H,Lin M,Mehta RS,Su MY

    更新日期:2013-11-01 00:00:00

  • In vivo proton magnetic resonance spectroscopy of alcohol in rhesus monkey brain.

    abstract::Brain alcohol was measured in rhesus monkeys (Macaca mulatta) by proton magnetic resonance spectroscopy (MRS) following acute nasogastric alcohol administration (0.8 g/kg). Monkeys were anesthetized with ketamine and xylazine. A 1.5 T whole body imager and a 3-inch surface coil were used to acquire TE 30 and 270 ms sp...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(94)90089-a

    authors: Kaufman MJ,Chiu TM,Mendelson JH,Woods BT,Mello NK,Lukas SE,Fivel PA,Wighton LG

    更新日期:1994-01-01 00:00:00

  • MR characteristics of neoplasms and vascular malformations associated with epilepsy.

    abstract::We assessed the magnetic resonance (MR) imaging characteristics of two categories of epileptogenic substrates, neoplasms, and vascular malformations, to determine MR sensitivity and typical imaging features. A blinded retrospective analysis was performed on MR scans from 41 patients who had a neoplasm or vascular malf...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(95)02026-p

    authors: Bronen RA,Fulbright RK,Spencer DD,Spencer SS,Kim JH,Lange RC

    更新日期:1995-01-01 00:00:00

  • Technical evaluation of in vivo abdominal fat and IMCL quantification using MRI and MRSI at 3 T.

    abstract:OBJECTIVES:The objectives of this study were to develop protocols that measure abdominal fat and calf muscle lipids with magnetic resonance imaging (MRI) and magnetic resonance spectroscopy (MRS), respectively, at 3 T and to examine the correlation between these parameters and insulin sensitivity. MATERIALS AND METHOD...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2007.06.006

    authors: Li X,Youngren JF,Hyun B,Sakkas GK,Mulligan K,Majumdar S,Masharani UB,Schambelan M,Goldfine ID

    更新日期:2008-02-01 00:00:00

  • Biodegradable cystamine spacer facilitates the clearance of Gd(III) chelates in poly(glutamic acid) Gd-DO3A conjugates for contrast-enhanced MR imaging.

    abstract::Poly(L-glutamic acid) (PGA)-cystamine-[gadolinium (Gd)-DO3A] was prepared in high yield with a high Gd-DO3A conjugation efficiency. Approximately 55% of the carboxylic groups in PGA were loaded with Gd-DO3A via cystamine as the spacer. Cystamine can be readily cleaved by endogenous thiols to release the Gd(III) chelat...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2006.03.009

    authors: Ke T,Feng Y,Guo J,Parker DL,Lu ZR

    更新日期:2006-09-01 00:00:00

  • An MRI perfusion model incorporating nonequilibrium exchange between vascular and extravascular compartments.

    abstract::A model of MRI signal intensity which is a function of perfusion is developed based upon the assumption that biological tissue can be represented by a blood and tissue compartment. The longitudinal magnetization is derived from the Bloch equations which are modified to model the magnetization in both the blood and tis...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(91)90095-4

    authors: Gullberg GT,Ma X,Parker DL,Roy DN

    更新日期:1991-01-01 00:00:00

  • Paradoxical parasellar high signals resembling shunt diseases on routine 3D time-of-flight MR angiography of the brain: mechanism for the signals and differential diagnosis from shunt diseases.

    abstract:BACKGROUND AND PURPOSE:We occasionally encounter phenomena in which venous flow signals of the cavernous sinus (CS) and/or inferior petrosal sinus (IPS) are visualized paradoxically in patients without arteriovenous shunt in 3D time-of-flight magnetic resonance angiography (3D-TOF MRA) of the brain. The aims of this st...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2004.08.004

    authors: Sakamoto M,Taoka T,Iwasaki S,Nakagawa H,Fukusumi A,Takayama K,Wada T,Kichikawa K

    更新日期:2004-11-01 00:00:00

  • Non-contrast MR Lymphography of lipedema of the lower extremities.

    abstract:AIM:To assess imaging findings and characteristics of the lymphatic system in patients affected by lipedema and lipolymphedema of the lower extremities on Non-Contrast MR Lymphography (NCMRL). MATERIALS AND METHODS:44 lower extremities in 11 consecutive female patients affected by lipedema, and 11 patients with lipoly...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2020.06.010

    authors: Cellina M,Gibelli D,Soresina M,Menozzi A,Martinenghi C,Panzeri M,Oliva G

    更新日期:2020-09-01 00:00:00

  • High density barium sulphate as an MRI oral contrast.

    abstract::High density barium sulphate suspension was investigated as an oral contrast on MRI. On 30 consecutive subjects, the stomach (in all cases) and the two first portions of the duodenum (in 21 cases) were filled with the suspension. This oral contrast behaved as a negative contrast, being hypointense on all pulse sequenc...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(91)90019-i

    authors: Marti-Bonmati L,Vilar J,Paniagua JC,Talens A

    更新日期:1991-01-01 00:00:00

  • Correlations and dissociations between BOLD signal and P300 amplitude in an auditory oddball task: a parametric approach to combining fMRI and ERP.

    abstract::A parametric method is proposed to examine the relationship between neuronal activity, measured with event related potentials (ERPs), and the hemodynamic response, observed with functional magnetic resonance imaging (fMRI), during an auditory oddball paradigm. After verifying that the amplitude of the evoked response ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(02)00496-4

    authors: Horovitz SG,Skudlarski P,Gore JC

    更新日期:2002-05-01 00:00:00

  • Initial clinical evaluation of gadolinium DTPA for contrast-enhanced magnetic resonance imaging.

    abstract::Gadolinium DTPA was evaluated as an intravenous contrast agent for magnetic resonance imaging in 15 patients with primary or secondary intracranial neoplastic disease. T1 and T2 weighted images were obtained prior to contrast administration. T1 weighted spin echo 35/800 (TE/TR) images were utilized to detect enhanceme...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(85)90006-2

    authors: Runge VM,Schoerner W,Niendorf HP,Laniado M,Koehler D,Claussen C,Felix R,James AE Jr

    更新日期:1985-01-01 00:00:00

  • Phase gradient imaging for positive contrast generation to superparamagnetic iron oxide nanoparticle-labeled targets in magnetic resonance imaging.

    abstract::Positive contrast imaging methods produce enhanced signal at large magnetic field gradient in magnetic resonance imaging. Several postprocessing algorithms, such as susceptibility gradient mapping and phase gradient mapping methods, have been applied for positive contrast generation to detect the cells targeted by sup...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2011.04.011

    authors: Zhu H,Demachi K,Sekino M

    更新日期:2011-09-01 00:00:00

  • Hepatic sarcoidosis: MR appearances in patients with chronic liver disease.

    abstract:PURPOSE:To describe the MR appearances of hepatic sarcoidosis in patients with chronic liver disease and correlate the results with clinical stage of disease as measured with the Mayo end-stage liver disease (MELD) score. MATERIALS AND METHODS:Twenty patients with chronic liver disease and histopathological diagnosis ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2012.08.005

    authors: Ferreira A,Ramalho M,de Campos RO,Heredia V,Roque A,Vaidean G,Semelka RC

    更新日期:2013-04-01 00:00:00

  • Rapid and recoverable in vivo magnetic resonance imaging of the adult zebrafish at 7T.

    abstract::Increasing scientific interest in the zebrafish as a model organism across a range of biomedical and biological research areas raises the need for the development of in vivo imaging tools appropriate to this subject. Development of the embryonic and early stage forms of the subject can currently be assessed using opti...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2016.10.013

    authors: Merrifield GD,Mullin J,Gallagher L,Tucker C,Jansen MA,Denvir M,Holmes WM

    更新日期:2017-04-01 00:00:00

  • Applications of controlled-flow laser-polarized xenon gas to porous and granular media study.

    abstract::We report initial NMR studies of continuous flow laser-polarized xenon gas, both in unrestricted tubing, and in a model porous media. The study uses Pulsed Gradient Spin Echo-based techniques in the gas-phase, with the aim of obtaining more sophisticated information than just translational self-diffusion coefficients....

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(03)00156-5

    authors: Mair RW,Wang R,Rosen MS,Candela D,Cory DG,Walsworth RL

    更新日期:2003-04-01 00:00:00

  • The study of heat stress in tomato fruits by NMR microimaging.

    abstract::The ripening of the tomato fruit was delayed for several days (average 5 days) by a 1-day heat treatment at 42 degrees C. Ethylene production increased during the first 3 h, but, after 6 h inhibition was almost total in tomato fruit incubated at 42 degrees C. However, recovery of ethylene production was rapid if fruit...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(98)00219-7

    authors: Iwahashi Y,Horigane AK,Yoza K,Nagata T,Hosoda H

    更新日期:1999-06-01 00:00:00

  • Visualisation of changes in regional cerebral blood flow (rCBF) produced by ketamine using long TE gradient-echo sequences: preliminary results.

    abstract::Autoradiographic studies have shown that low dose ketamine produces increases in regional glucose utilisation and blood flow in the hippocampus, cerebral cortex, and olfactory lobe in the rat brain, probably due to antagonism at the NMDA receptor. Functional MRI using deoxyhaemoglobin contrast can be used to study cha...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(95)00010-e

    authors: Burdett NG,Menon DK,Carpenter TA,Jones JG,Hall LD

    更新日期:1995-01-01 00:00:00

  • Liposomal Gd-DTPA: effect of encapsulation on enhancement of hepatoma model by MRI.

    abstract::Liposomes entrapping gadolinium-DTPA (Gd-DTPA) were synthesized from 60 mole percent egg phosphatidylcholine (EPC) and 40 mole percent cholesterol or EPC alone entrapping Gd-DTPA in diameters of 100 and 200 nm. Rats bearing Morris hepatoma in their flanks were imaged by MR pre- and post-contrast with free Gd-DTPA and ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(89)90491-8

    authors: Unger EC,MacDougall P,Cullis P,Tilcock C

    更新日期:1989-07-01 00:00:00

  • Isotropically weighted intravoxel incoherent motion brain imaging at 7T.

    abstract::Perfusion magnetic resonance imaging (MRI) is a promising non-invasive technique providing insights regarding the brain's microvascular architecture in vivo. The scalar perfusion metrics can be used for quantitative diagnostics of various brain abnormalities, in particular, in the stroke cases and tumours. However, co...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2018.11.007

    authors: Maximov II,Vellmer S

    更新日期:2019-04-01 00:00:00