Abstract:
:In this study, we analyzed 93 whole genomes from Chinese spot-billed ducks (CSB), meat-type ducks (MET), and egg and dual purpose-type ducks (EDT) to characterize the genetic material flowing between the CSB and modern ducks. Using a frequency of shared identical-by-descent method, approximately 10.9 Mb introgression segments containing 140 genes were identified showing the signatures of introgression between CSB and EDT. Meanwhile, nearly 10.6 M introgression regions containing 149 genes were identified between CSB and MET. Based on the haplotypes tree of each segment, we found that the introgression between CSB and domesticated ducks was asymmetric with a high level of gene flow from domestic to CSB and a low level of migration in the opposite direction. Moreover, we identified several genes that were introgressions from CSB and showed the signature of positive selection, which may contribute to the breeding of modern ducks. Our results provide new insight into the evolution and breeding history of domestic ducks and may be useful for the future management of wild and domestic duck populations.
journal_name
Anim Genetjournal_title
Animal geneticsauthors
Guo X,Wang ZC,Wang S,Li HF,Suwannapoom C,Wang JX,Zhang C,Shao Y,Wang MS,Jiang RSdoi
10.1111/age.13002subject
Has Abstractpub_date
2020-12-01 00:00:00pages
866-875issue
6eissn
0268-9146issn
1365-2052journal_volume
51pub_type
杂志文章相关文献
ANIMAL GENETICS文献大全abstract::Residual feed intake (RFI) has been adopted in Australia for the purpose of genetic improvement in feed efficiency in beef cattle. RFI is the difference between the observed feed intake of an animal and the predicted feed intake based on its size and growth rate over a test period. Gene expression of eight candidate g...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12092
更新日期:2014-02-01 00:00:00
abstract::In the present study, data from four F2 crosses were analysed and used to study the linkage disequilibrium (LD) structure within and across the crosses. Genome-wide association analyses (GWASes) for conductivity and dressing out meat traits were conducted using single-marker and Bayesian multi-marker models using the ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12684
更新日期:2018-10-01 00:00:00
abstract::Genomic DNAs from animals representing six breeds of cattle (Angus, Brahman, Hereford, Holstein, Jersey and Texas Longhorn) were screened with cloned gene probes in a search for restriction fragment length polymorphisms (RFLPs). Eleven RFLPs were identified using seven different probes: growth hormone, prolactin, oste...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1989.tb00866.x
更新日期:1989-01-01 00:00:00
abstract::To determine genetic diversity and evolutionary relationships among Chinese buffalo populations, 18 indigenous swamp buffalo populations and two introduced river buffalo breeds were genotyped for 30 microsatellite loci. The mean number of alleles across the 30 loci was 8.13, and the expected heterozygosity ranged from...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2007.01648.x
更新日期:2007-12-01 00:00:00
abstract::Analysis of elution profiles of enzymatic and CNBr digests of kappa-caseins C and E, and sequencing of most relevant peptides allowed the chemical characterization of both genetic variants. They differ from their B and A allelic counterparts by a single substitution, His97/Arg and Gly155/Ser, respectively. Electrophor...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1993.tb00915.x
更新日期:1993-02-01 00:00:00
abstract::Numerous mapping studies of complex traits in the pig have resulted in quantitative trait loci (QTL) intervals of 10-20 cM. To improve the chances to identify the genes located in such intervals, increased expressed sequence tags (EST)-based marker density, coupled with comparative mapping with species whose genomes h...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2005.01328.x
更新日期:2005-10-01 00:00:00
abstract::Although there are differences in performance between genetic groups of channel catfish, identification and management of these groups is difficult because catfish strains look alike and individuals cannot be tagged efficiently. Thus, US catfish producers have not been able to objectively identify fish from different ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2007.01586.x
更新日期:2007-04-01 00:00:00
abstract::A GWAS was performed using the genotypes obtained by PorcineSNP60 v2 BeadChip and 11 phenotypic traits (carcass lean meat percentage; backfat thickness; Longissimus thoracis muscle thickness; lightness; backfat thickness measured with caliper at the midline; meat pH measured at about 1 h post mortem and 24 h post mort...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.13013
更新日期:2020-12-01 00:00:00
abstract::Tying-up syndrome, also known as recurrent exertional rhabdomyolysis in Thoroughbreds, is a common muscle disorder for racehorses. In this study, we performed a multipoint linkage analysis using LOKI based on the Bayesian Markov chain Monte Carlo method using 5 half-sib families (51 affected and 277 nonaffected horses...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2010.02112.x
更新日期:2010-12-01 00:00:00
abstract::Almost half of all US households own a dog (Canis familiaris). Though these household pets can attack humans and other animals, they are also frequently victims of cruelty, neglect and theft. In human-oriented investigations, the tendency of domestic dogs to leave behind physical traces (such as hair) can serve as val...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12758
更新日期:2019-02-01 00:00:00
abstract::Nucleotide-Binding Oligomerization Domain 2 (NOD2) has been reported to be a candidate gene for Mycobacterium avium subsp. paratuberculosis (MAP) infection in a Bos taurus × Bos indicus mixed breed based on a genetic association with the c.2197T>C single nucleotide polymorphism (SNP). Nevertheless, this SNP has also b...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2010.02055.x
更新日期:2010-12-01 00:00:00
abstract::A candidate gene analysis of the microphthalmia-associated transcription factor (MITF) gene was used in an attempt to identify the genetic basis for a white-spotted coat color phenotype in the Asian swamp buffalo (Bubalus bubalis carabanensis). Ninety-three buffaloes-32 solid, 38 spotted and 23 white individuals-were ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12334
更新日期:2015-12-01 00:00:00
abstract::Two new haemoglobin variants, provisionally named Hb G and Hb H, were found during a survey of 295 Welsh Mountain cross-bred sheep. Both haemoglobins appear to be beta chain variants controlled by genes allelic to those for the common forms Hb A and Hb B. Studies on an anaemic Hb AH and an Hb AG type sheep showed that...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1990.tb03215.x
更新日期:1990-01-01 00:00:00
abstract::Previously, we re-sequenced the whole genomes of eight Holstein bulls with high or low milk protein and fat percentage, and we detected two indels in the ACACB (acetyl-CoA carboxylase beta) gene that were polymorphic between the two groups. Thus, we considered ACACB as a promising candidate gene potentially affecting ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12651
更新日期:2018-06-01 00:00:00
abstract::We present the first radiation hybrid (RH) map of river buffalo (Bubalus bubalis) chromosome 6 (BBU6) developed with a recently constructed river buffalo whole-genome RH panel (BBURH(5000)). The preliminary map contains 33 cattle-derived markers, including 12 microsatellites, 19 coding genes and two ESTs, distributed ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2007.01612.x
更新日期:2007-08-01 00:00:00
abstract::Presented herein is an updated sheep cytogenetic map that contains 452 loci (291 type I and 161 type II) assigned to specific chromosome bands or regions on standard R-banded ideograms. This map, which significantly extends our knowledge of the physical organization of the ovine genome, includes new assignments for 88...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2007.01598.x
更新日期:2007-06-01 00:00:00
abstract::In the European rabbit (Oryctolagus cuniculus), a polytocous livestock species, the number of teats indirectly impacts the doe reproduction efficiency and, in turn, the sustainable production of rabbit meat. In this study, we carried out a genome-wide association study (GWAS) for the total number of teats in 247 Itali...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.13036
更新日期:2021-01-11 00:00:00
abstract::The polymorphism at the PvuII recognition site in the ESR gene showed no statistically significant association with sow productivity traits in a Meishan x Large White F2 population. Estimates of the effect on litter size were, however, in the opposite direction and statistically different from previously published est...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1046/j.1365-2052.2002.00889.x
更新日期:2002-12-01 00:00:00
abstract::Microsatellite polymorphisms are finding increasing use in genetics. In addition to the random isolation of microsatellite markers, such markers can also be developed from sequences already present in public domain databases. An advantage of public domain databases is that these microsatellites are known to be located...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1995.tb02636.x
更新日期:1995-04-01 00:00:00
abstract::There is evidence that NR6A1 is a strong candidate for being a causal gene underlying vertebral number in pigs. The Licha Black is one of the leanest Chinese indigenous pig breeds, having an average vertebral number of 21.5. The introgression of Western germplasm into Licha Black, resulting in increased vertebral numb...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2008.01820.x
更新日期:2009-04-01 00:00:00
abstract::The Japanese quail (Coturnix japonica; JQ) is one of the domesticated fowl species of Japan. To provide DNA sequence information for examination of its phylogenetic position in the order Galliformes, the complete sequence of the JQ mitochondria was determined. Sequence analysis revealed that the JQ mitochondrial genom...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1046/j.1365-2052.2001.00795.x
更新日期:2001-12-01 00:00:00
abstract::Fractures are medical conditions that compromise the athletic potential of horses and/or the safety of jockeys. Therefore, the reduction of fracture risk is an important horse and human welfare issue. The present study used molecular genetic approaches to determine the effect of genetic risk for fracture at four candi...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12866
更新日期:2020-02-01 00:00:00
abstract::Performance data for 164,046 Thoroughbreds entered in a race or official barrier trial in Australia were provided by Racing Information Services Australia. Analyses estimating the heritability for a range of racing performance traits using a single-trait animal model were performed using ASREML-R. Log of cumulative ea...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12234
更新日期:2015-02-01 00:00:00
abstract::Marker-assisted selection (MAS) uses genetic marker genotypes to predict an animal's production potential and will provide additional selection information for progeny testing. With the discovery of highly polymorphic microsatellite markers, the tools now exist to begin the search for economic trait loci (ETL), which ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1996.tb00484.x
更新日期:1996-08-01 00:00:00
abstract::Despite the economic interest of the fatty acid profile in pigs, no gene has been convincingly associated with this trait so far. Here, the porcine microsomal triglyceride transfer protein (MTTP) gene, which plays a crucial role in the assembly of nascent lipoproteins, has been analysed as a positional candidate gene ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2009.01922.x
更新日期:2009-12-01 00:00:00
abstract::Swiss Fleckvieh was established in 1970 as a composite of Simmental (SI) and Red Holstein Friesian (RHF) cattle. Breed composition is currently reported based on pedigree information. Information on a large number of molecular markers potentially provides more accurate information. For the analysis, we used Illumina B...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.2012.02345.x
更新日期:2012-12-01 00:00:00
abstract::A well-established and characterized somatic cell hybrid panel was used to map three polymorphic microsatellites. Microsatellite S0072, representing the linkage group S0007-S0072, was assigned to porcine chromosome 14. Microsatellite S0009, representing the unassigned linkage group EAM-S0009-S0071, was assigned tentat...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1994.tb00369.x
更新日期:1994-10-01 00:00:00
abstract::MicroRNA (miRNA) biogenesis is determined mainly by Drosha, Dicer and Argonaute2 (Ago2). Different breeds of pigs with vast differences in serum cortisol level demonstrate distinct profiles of hepatic miRNA expression. As yet, little is known about whether glucocorticoid contributes to the breed differences in miRNA b...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12232
更新日期:2014-12-01 00:00:00
abstract::A synthetic oligodeoxyribonucleotide probe (OAT36) comprising nine repeats of 5'GACA 3' and several enzymes were used to analyse cow, (Bos taurus) and buffalo (Bubalus bubalis) genomes and a number of monomorphic loci were detected in both the species. Different animals from the same species showed an almost 'similar'...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/j.1365-2052.1993.tb00288.x
更新日期:1993-06-01 00:00:00
abstract::Modern commercial chickens have been bred for one of two specific purposes: meat production (broilers) or egg production (layers). This has led to large phenotypic changes, so that the genomic signatures of selection may be detectable using statistical techniques. Genetic differentiation between nine distinct broiler ...
journal_title:Animal genetics
pub_type: 杂志文章
doi:10.1111/age.12252
更新日期:2015-02-01 00:00:00