Abstract:
:Due to the contribution of drug-target binding kinetics to drug efficacy, there is a high level of interest in developing methods to predict drug-target binding kinetic parameters. During the review period, a wide range of enhanced sampling molecular dynamics simulation-based methods has been developed for computing drug-target binding kinetics and studying binding and unbinding mechanisms. Here, we assess the performance of these methods considering two benchmark systems in detail: mutant T4 lysozyme-ligand complexes and a large set of N-HSP90-inhibitor complexes. The results indicate that some of the simulation methods can already be usefully applied in drug discovery or lead optimization programs but that further studies on more high-quality experimental benchmark datasets are necessary to improve and validate computational methods.
journal_name
Curr Opin Struct Bioljournal_title
Current opinion in structural biologyauthors
Nunes-Alves A,Kokh DB,Wade RCdoi
10.1016/j.sbi.2020.06.022subject
Has Abstractpub_date
2020-10-01 00:00:00pages
126-133eissn
0959-440Xissn
1879-033Xpii
S0959-440X(20)30121-4journal_volume
64pub_type
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